Ggra9227.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9227.t1
Unique NameGgra9227.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length320
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:425478..426509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9227Ggra9227Gracilaria gracilis GNS1m malegenetig00000075_pilon 425478..426509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9227.t1Ggra9227.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 425478..426509 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9227.t1.stop1Ggra9227.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 425478..425480 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9227.t1.CDS1Ggra9227.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 425478..426177 -
Ggra9227.t1.CDS2Ggra9227.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 426250..426509 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9227.t1.exon1Ggra9227.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 425478..426177 -
Ggra9227.t1.exon2Ggra9227.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 426250..426509 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9227.t1.intron1Ggra9227.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 426178..426249 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9227.t1.start1Ggra9227.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 426507..426509 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9227.t1 ID=Ggra9227.t1|Name=Ggra9227.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=320bp
MEMTNLSPVQAFLLRMSTPLTLGGAAYSEANLSPLLRDEDISVGALSISW
STFDFLTSVVKAIPWRRLPVLCNFMSFLLICTMLSRTFLYIVKRRSGAVG
PSMAPILIKFWAVYGAFQFFSQVLCLYLAPFHGQVLISCTRAPILMLLCY
GRRLQTSCHVYQASIVPFYEANEPEIEGRFQRAKATQSDLDEAFRQLAVY
LLQRMAVSGLSSLIPIPRFDTPPAVSGSDNPSQSGKRKEESTPLPQNTAV
FPSSRNFFGNESDHRVRTVFAANRENLGGAIQPARAPEMPTAAYHNLRAF
RKQLRDRFQKTASGKVAPG*
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spliced messenger RNA

>Ggra9227.t1 ID=Ggra9227.t1|Name=Ggra9227.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000075_pilon:425478..426509- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATGACCAACTTGTCTCCAGTACAGGCCTTTTTGCTACGTATGTC
CACTCCGCTGACTTTAGGGGGTGCTGCTTATTCAGAAGCAAACTTATCTC
CGCTGCTTCGAGATGAGGACATTTCTGTTGGTGCATTATCCATTTCCTGG
AGCACGTTCGATTTCCTGACAAGCGTGGTCAAGGCAATTCCATGGCGACG
TTTACCTGTTCTATGTAACTTCATGAGTTTCTTACTCATTTGCACGATGT
TATCTCGGACGTTCTTGTACATAGTGAAGAGAAGATCTGGGGCGGTGGGG
CCTTCCATGGCACCAATCCTTATCAAATTCTGGGCTGTCTACGGTGCATT
TCAATTCTTTTCTCAAGTCCTGTGTCTCTATCTTGCTCCTTTCCATGGAC
AAGTTCTGATATCTTGCACGCGAGCTCCAATTCTCATGCTTCTTTGCTAC
GGCCGTCGTCTGCAAACTTCATGTCATGTATACCAAGCAAGCATTGTCCC
CTTTTATGAGGCCAACGAACCCGAAATTGAAGGTAGGTTTCAACGTGCTA
AGGCCACTCAGTCTGACCTGGATGAGGCCTTTCGTCAACTCGCTGTTTAT
TTATTGCAAAGAATGGCTGTCAGTGGGTTATCGAGCCTAATACCAATACC
AAGATTTGATACACCTCCAGCAGTATCTGGATCGGACAACCCCAGTCAAT
CCGGAAAACGAAAAGAAGAAAGCACCCCCTTGCCGCAAAATACAGCGGTG
TTTCCGAGCAGTAGGAACTTCTTCGGAAATGAATCAGATCATCGAGTTAG
AACTGTCTTTGCTGCCAATCGAGAAAACCTTGGTGGCGCAATCCAACCTG
CTCGAGCTCCGGAAATGCCAACGGCGGCATATCACAATTTGCGTGCGTTC
CGAAAGCAGTTGCGTGATCGATTTCAAAAGACCGCAAGTGGTAAGGTCGC
TCCAGGGTGA
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protein sequence of Ggra9227.t1

>Ggra9227.t1 ID=Ggra9227.t1|Name=Ggra9227.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MEMTNLSPVQAFLLRMSTPLTLGGAAYSEANLSPLLRDEDISVGALSISW
STFDFLTSVVKAIPWRRLPVLCNFMSFLLICTMLSRTFLYIVKRRSGAVG
PSMAPILIKFWAVYGAFQFFSQVLCLYLAPFHGQVLISCTRAPILMLLCY
GRRLQTSCHVYQASIVPFYEANEPEIEGRFQRAKATQSDLDEAFRQLAVY
LLQRMAVSGLSSLIPIPRFDTPPAVSGSDNPSQSGKRKEESTPLPQNTAV
FPSSRNFFGNESDHRVRTVFAANRENLGGAIQPARAPEMPTAAYHNLRAF
RKQLRDRFQKTASGKVAPG*
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mRNA from alignment at tig00000075_pilon:425478..426509-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9227.t1 ID=Ggra9227.t1|Name=Ggra9227.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1032bp|location=Sequence derived from alignment at tig00000075_pilon:425478..426509- (Gracilaria gracilis GNS1m male)
ATGGAAATGACCAACTTGTCTCCAGTACAGGCCTTTTTGCTACGTATGTC
CACTCCGCTGACTTTAGGGGGTGCTGCTTATTCAGAAGCAAACTTATCTC
CGCTGCTTCGAGATGAGGACATTTCTGTTGGTGCATTATCCATTTCCTGG
AGCACGTTCGATTTCCTGACAAGCGTGGTCAAGGCAATTCCATGGCGACG
TTTACCTGTTCTATGTAACTTCATGAGTTTCTTACTCATTTGCACGATGT
TATCTCGGACGTAAGTGATCTGACATCTCTTTTTGACGTTGCGCACTCCG
TTTGCTAACCCCCTTTACTTTCGGAAAGGCAGGTTCTTGTACATAGTGAA
GAGAAGATCTGGGGCGGTGGGGCCTTCCATGGCACCAATCCTTATCAAAT
TCTGGGCTGTCTACGGTGCATTTCAATTCTTTTCTCAAGTCCTGTGTCTC
TATCTTGCTCCTTTCCATGGACAAGTTCTGATATCTTGCACGCGAGCTCC
AATTCTCATGCTTCTTTGCTACGGCCGTCGTCTGCAAACTTCATGTCATG
TATACCAAGCAAGCATTGTCCCCTTTTATGAGGCCAACGAACCCGAAATT
GAAGGTAGGTTTCAACGTGCTAAGGCCACTCAGTCTGACCTGGATGAGGC
CTTTCGTCAACTCGCTGTTTATTTATTGCAAAGAATGGCTGTCAGTGGGT
TATCGAGCCTAATACCAATACCAAGATTTGATACACCTCCAGCAGTATCT
GGATCGGACAACCCCAGTCAATCCGGAAAACGAAAAGAAGAAAGCACCCC
CTTGCCGCAAAATACAGCGGTGTTTCCGAGCAGTAGGAACTTCTTCGGAA
ATGAATCAGATCATCGAGTTAGAACTGTCTTTGCTGCCAATCGAGAAAAC
CTTGGTGGCGCAATCCAACCTGCTCGAGCTCCGGAAATGCCAACGGCGGC
ATATCACAATTTGCGTGCGTTCCGAAAGCAGTTGCGTGATCGATTTCAAA
AGACCGCAAGTGGTAAGGTCGCTCCAGGGTGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:425478..426509-

>Ggra9227.t1 ID=Ggra9227.t1|Name=Ggra9227.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=960bp|location=Sequence derived from alignment at tig00000075_pilon:425478..426509- (Gracilaria gracilis GNS1m male)
ATGGAAATGACCAACTTGTCTCCAGTACAGGCCTTTTTGCTACGTATGTC
CACTCCGCTGACTTTAGGGGGTGCTGCTTATTCAGAAGCAAACTTATCTC
CGCTGCTTCGAGATGAGGACATTTCTGTTGGTGCATTATCCATTTCCTGG
AGCACGTTCGATTTCCTGACAAGCGTGGTCAAGGCAATTCCATGGCGACG
TTTACCTGTTCTATGTAACTTCATGAGTTTCTTACTCATTTGCACGATGT
TATCTCGGACGTTCTTGTACATAGTGAAGAGAAGATCTGGGGCGGTGGGG
CCTTCCATGGCACCAATCCTTATCAAATTCTGGGCTGTCTACGGTGCATT
TCAATTCTTTTCTCAAGTCCTGTGTCTCTATCTTGCTCCTTTCCATGGAC
AAGTTCTGATATCTTGCACGCGAGCTCCAATTCTCATGCTTCTTTGCTAC
GGCCGTCGTCTGCAAACTTCATGTCATGTATACCAAGCAAGCATTGTCCC
CTTTTATGAGGCCAACGAACCCGAAATTGAAGGTAGGTTTCAACGTGCTA
AGGCCACTCAGTCTGACCTGGATGAGGCCTTTCGTCAACTCGCTGTTTAT
TTATTGCAAAGAATGGCTGTCAGTGGGTTATCGAGCCTAATACCAATACC
AAGATTTGATACACCTCCAGCAGTATCTGGATCGGACAACCCCAGTCAAT
CCGGAAAACGAAAAGAAGAAAGCACCCCCTTGCCGCAAAATACAGCGGTG
TTTCCGAGCAGTAGGAACTTCTTCGGAAATGAATCAGATCATCGAGTTAG
AACTGTCTTTGCTGCCAATCGAGAAAACCTTGGTGGCGCAATCCAACCTG
CTCGAGCTCCGGAAATGCCAACGGCGGCATATCACAATTTGCGTGCGTTC
CGAAAGCAGTTGCGTGATCGATTTCAAAAGACCGCAAGTGGTAAGGTCGC
TCCAGGGTGA
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