Ggra9224.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9224.t1
Unique NameGgra9224.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:422680..423373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMN127CT
PFAMsATP-synt_DE_N
Max annot lvl2759|Eukaryota
KEGG koko:K02134
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
GOsGO:0000275,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005756,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045259,GO:0045261,GO:0045269,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600
Evalue1.1e-42
EggNOG OGsCOG0355@1|root,KOG1758@2759|Eukaryota
Descriptionproton-transporting ATP synthase activity, rotational mechanism
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9224Ggra9224Gracilaria gracilis GNS1m malegenetig00000075_pilon 422680..423373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9224.t1Ggra9224.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 422680..423373 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9224.t1.start1Ggra9224.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 422680..422682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9224.t1.CDS1Ggra9224.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 422680..422841 +
Ggra9224.t1.CDS2Ggra9224.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 422943..423134 +
Ggra9224.t1.CDS3Ggra9224.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000075_pilon 423224..423373 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9224.t1.exon1Ggra9224.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 422680..422841 +
Ggra9224.t1.exon2Ggra9224.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 422943..423134 +
Ggra9224.t1.exon3Ggra9224.t1.exon3Gracilaria gracilis GNS1m maleexontig00000075_pilon 423224..423373 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9224.t1.intron1Ggra9224.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 422842..422942 +
Ggra9224.t1.intron2Ggra9224.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000075_pilon 423135..423223 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9224.t1.stop1Ggra9224.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 423371..423373 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9224.t1 ID=Ggra9224.t1|Name=Ggra9224.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=168bp
MLSRTALLRRAVARATRFPAPRRMLAEQAIAVEGNKLKFNFFLPHDTIKH
NAEVDMVIVPASSGLMGILPSHAPTVAQLRSGVVEVHDGEGKESYFVSSG
FAFVHKDRTDLCAVEAVKLDDIDPDAVAKGLSDSEAAVASAKDDLERAEA
QIGVDVYMAMQGALAMK*
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spliced messenger RNA

>Ggra9224.t1 ID=Ggra9224.t1|Name=Ggra9224.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=504bp|location=Sequence derived from alignment at tig00000075_pilon:422680..423373+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCAAGAACCGCATTGCTCCGACGCGCAGTAGCGAGGGCGACACG
ATTCCCAGCGCCGAGACGCATGCTTGCTGAGCAAGCTATTGCAGTCGAAG
GCAATAAGTTGAAGTTCAATTTCTTTTTGCCCCACGATACGATCAAGCAT
AATGCGGAAGTTGACATGGTAATCGTCCCGGCTTCAAGCGGTCTTATGGG
TATTTTGCCTTCCCATGCACCAACCGTCGCACAATTACGATCCGGCGTTG
TCGAGGTACACGATGGGGAAGGAAAAGAAAGCTATTTCGTTTCGTCAGGT
TTTGCATTCGTGCACAAGGATCGCACCGATTTGTGCGCTGTGGAAGCTGT
GAAGCTGGATGACATCGATCCGGATGCAGTTGCAAAAGGACTGTCGGATT
CAGAGGCTGCTGTTGCGTCGGCGAAGGATGATCTTGAGCGCGCTGAGGCG
CAAATTGGCGTTGACGTATATATGGCTATGCAAGGCGCACTAGCGATGAA
GTAA
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protein sequence of Ggra9224.t1

>Ggra9224.t1 ID=Ggra9224.t1|Name=Ggra9224.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=168bp
MLSRTALLRRAVARATRFPAPRRMLAEQAIAVEGNKLKFNFFLPHDTIKH
NAEVDMVIVPASSGLMGILPSHAPTVAQLRSGVVEVHDGEGKESYFVSSG
FAFVHKDRTDLCAVEAVKLDDIDPDAVAKGLSDSEAAVASAKDDLERAEA
QIGVDVYMAMQGALAMK*
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mRNA from alignment at tig00000075_pilon:422680..423373+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9224.t1 ID=Ggra9224.t1|Name=Ggra9224.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=694bp|location=Sequence derived from alignment at tig00000075_pilon:422680..423373+ (Gracilaria gracilis GNS1m male)
ATGCTGTCAAGAACCGCATTGCTCCGACGCGCAGTAGCGAGGGCGACACG
ATTCCCAGCGCCGAGACGCATGCTTGCTGAGCAAGCTATTGCAGTCGAAG
GCAATAAGTTGAAGTTCAATTTCTTTTTGCCCCACGATACGATCAAGCAT
AATGCGGAAGTTGTATGTTCTTAATTTGCGGTTTGCCAAGCGATGCTGGT
CATCACTACATCACGACATTCCGTCGCTAACTTATTGCACGATTTCGAAC
TTTTCTTGCGCAGGACATGGTAATCGTCCCGGCTTCAAGCGGTCTTATGG
GTATTTTGCCTTCCCATGCACCAACCGTCGCACAATTACGATCCGGCGTT
GTCGAGGTACACGATGGGGAAGGAAAAGAAAGCTATTTCGTTTCGTCAGG
TTTTGCATTCGTGCACAAGGATCGCACCGATTTGTGCGCTGTGGAAGCTG
TGAAGGTAAGTTATCGGAATCATGTTGTGCCTCCTTTTGTAACAAATAGA
GTTGCTGACTAGAACGATGGTTTCGTCATTGTTCCGCTTCTCAGCTGGAT
GACATCGATCCGGATGCAGTTGCAAAAGGACTGTCGGATTCAGAGGCTGC
TGTTGCGTCGGCGAAGGATGATCTTGAGCGCGCTGAGGCGCAAATTGGCG
TTGACGTATATATGGCTATGCAAGGCGCACTAGCGATGAAGTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:422680..423373+

>Ggra9224.t1 ID=Ggra9224.t1|Name=Ggra9224.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=504bp|location=Sequence derived from alignment at tig00000075_pilon:422680..423373+ (Gracilaria gracilis GNS1m male)
ATGCTGTCAAGAACCGCATTGCTCCGACGCGCAGTAGCGAGGGCGACACG
ATTCCCAGCGCCGAGACGCATGCTTGCTGAGCAAGCTATTGCAGTCGAAG
GCAATAAGTTGAAGTTCAATTTCTTTTTGCCCCACGATACGATCAAGCAT
AATGCGGAAGTTGACATGGTAATCGTCCCGGCTTCAAGCGGTCTTATGGG
TATTTTGCCTTCCCATGCACCAACCGTCGCACAATTACGATCCGGCGTTG
TCGAGGTACACGATGGGGAAGGAAAAGAAAGCTATTTCGTTTCGTCAGGT
TTTGCATTCGTGCACAAGGATCGCACCGATTTGTGCGCTGTGGAAGCTGT
GAAGCTGGATGACATCGATCCGGATGCAGTTGCAAAAGGACTGTCGGATT
CAGAGGCTGCTGTTGCGTCGGCGAAGGATGATCTTGAGCGCGCTGAGGCG
CAAATTGGCGTTGACGTATATATGGCTATGCAAGGCGCACTAGCGATGAA
GTAA
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