Ggra9223.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9223.t1
Unique NameGgra9223.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:421212..422093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S311_58V6.1
PFAMsJAB,MitMem_reg
Max annot lvl35493|Streptophyta
KEGG koko:K03249
KEGG Pathwayko03013,map03013
GOsGO:0000003,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009743,GO:0009744,GO:0009790,GO:0009791,GO:0009793,GO:0009846,GO:0009856,GO:0009987,GO:0010033,GO:0010154,GO:0010467,GO:0016020,GO:0019538,GO:0022414,GO:0031369,GO:0032501,GO:0032502,GO:0032991,GO:0034285,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044706,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051704,GO:0061458,GO:0071541,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901700
Evalue2.43e-74
EggNOG OGsCOG1310@1|root,KOG2975@2759|Eukaryota,37NSR@33090|Viridiplantae,3GEI1@35493|Streptophyta
DescriptionComponent of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
COG categoryJ
BRITEko00000,ko00001,ko03012,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9223Ggra9223Gracilaria gracilis GNS1m malegenetig00000075_pilon 421212..422093 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9223.t1.stop1Ggra9223.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 421212..421214 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9223.t1.CDS1Ggra9223.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 421212..422093 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9223.t1.exon1Ggra9223.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 421212..422093 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9223.t1.start1Ggra9223.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 422091..422093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9223.t1Ggra9223.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 421212..422093 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9223.t1 ID=Ggra9223.t1|Name=Ggra9223.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=294bp
MESTDIFLGGEDSGVREVQVSPVVLFNVLDHFIRRTEGKKRVIGTLLGRF
TASGTVYVTDSFPLPHSESGEEVAVDTDYHKNMYDLHNRVNSAEELVGWY
ATGTETDLKSVIIHEFYGRECVNPVHLLVDAELSSERFDMSAFVSTAYKI
DDLALSSEFRSIPVCMKPEKAEKVGLDVLFKNRRREEGDLTSPVMASEIE
NLEKSMERLLDLLDTIGKNVDAVVAGEVEGDVTTGRFLAETLTMVPRMNA
SDFERLFGDNMRDLLMVAYLCKLTQTQLIVAEKLLCVDTTPKY*
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spliced messenger RNA

>Ggra9223.t1 ID=Ggra9223.t1|Name=Ggra9223.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000075_pilon:421212..422093- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCCACAGATATCTTCCTTGGCGGGGAAGATAGCGGAGTTCGCGA
GGTTCAGGTTTCACCTGTTGTGTTATTTAACGTGTTGGATCATTTCATTC
GTCGGACGGAAGGCAAAAAGCGAGTGATTGGAACTTTGTTAGGGCGCTTT
ACCGCATCTGGTACGGTATATGTCACTGATTCCTTTCCATTACCTCACTC
TGAGAGTGGCGAAGAAGTCGCAGTTGATACGGATTATCATAAGAACATGT
ACGACCTCCACAATAGGGTGAATTCAGCCGAAGAGCTTGTTGGATGGTAT
GCAACTGGAACTGAAACCGACCTGAAATCTGTTATCATTCACGAGTTTTA
TGGGCGGGAGTGTGTCAATCCGGTTCATCTGCTAGTTGATGCTGAGTTGT
CAAGCGAACGATTTGACATGAGTGCTTTCGTTTCAACCGCATACAAGATT
GATGATCTTGCTCTCAGCTCTGAATTTCGCTCCATCCCAGTTTGCATGAA
ACCAGAAAAGGCCGAGAAAGTCGGTCTTGATGTTCTGTTTAAGAACAGAA
GAAGAGAAGAAGGTGATCTTACTTCCCCTGTGATGGCATCCGAAATTGAA
AACCTCGAGAAGTCTATGGAAAGACTTTTGGATCTTTTGGACACTATTGG
GAAGAATGTAGATGCCGTTGTTGCTGGAGAAGTAGAAGGTGATGTGACAA
CTGGAAGATTTTTAGCAGAAACATTGACAATGGTGCCCAGGATGAATGCA
TCTGATTTCGAGCGACTGTTTGGTGATAATATGCGCGATCTACTTATGGT
GGCATATCTCTGCAAACTCACCCAAACACAACTGATTGTTGCTGAGAAAC
TGCTTTGCGTAGACACTACACCTAAGTACTAA
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protein sequence of Ggra9223.t1

>Ggra9223.t1 ID=Ggra9223.t1|Name=Ggra9223.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MESTDIFLGGEDSGVREVQVSPVVLFNVLDHFIRRTEGKKRVIGTLLGRF
TASGTVYVTDSFPLPHSESGEEVAVDTDYHKNMYDLHNRVNSAEELVGWY
ATGTETDLKSVIIHEFYGRECVNPVHLLVDAELSSERFDMSAFVSTAYKI
DDLALSSEFRSIPVCMKPEKAEKVGLDVLFKNRRREEGDLTSPVMASEIE
NLEKSMERLLDLLDTIGKNVDAVVAGEVEGDVTTGRFLAETLTMVPRMNA
SDFERLFGDNMRDLLMVAYLCKLTQTQLIVAEKLLCVDTTPKY*
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mRNA from alignment at tig00000075_pilon:421212..422093-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9223.t1 ID=Ggra9223.t1|Name=Ggra9223.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000075_pilon:421212..422093- (Gracilaria gracilis GNS1m male)
ATGGAGTCCACAGATATCTTCCTTGGCGGGGAAGATAGCGGAGTTCGCGA
GGTTCAGGTTTCACCTGTTGTGTTATTTAACGTGTTGGATCATTTCATTC
GTCGGACGGAAGGCAAAAAGCGAGTGATTGGAACTTTGTTAGGGCGCTTT
ACCGCATCTGGTACGGTATATGTCACTGATTCCTTTCCATTACCTCACTC
TGAGAGTGGCGAAGAAGTCGCAGTTGATACGGATTATCATAAGAACATGT
ACGACCTCCACAATAGGGTGAATTCAGCCGAAGAGCTTGTTGGATGGTAT
GCAACTGGAACTGAAACCGACCTGAAATCTGTTATCATTCACGAGTTTTA
TGGGCGGGAGTGTGTCAATCCGGTTCATCTGCTAGTTGATGCTGAGTTGT
CAAGCGAACGATTTGACATGAGTGCTTTCGTTTCAACCGCATACAAGATT
GATGATCTTGCTCTCAGCTCTGAATTTCGCTCCATCCCAGTTTGCATGAA
ACCAGAAAAGGCCGAGAAAGTCGGTCTTGATGTTCTGTTTAAGAACAGAA
GAAGAGAAGAAGGTGATCTTACTTCCCCTGTGATGGCATCCGAAATTGAA
AACCTCGAGAAGTCTATGGAAAGACTTTTGGATCTTTTGGACACTATTGG
GAAGAATGTAGATGCCGTTGTTGCTGGAGAAGTAGAAGGTGATGTGACAA
CTGGAAGATTTTTAGCAGAAACATTGACAATGGTGCCCAGGATGAATGCA
TCTGATTTCGAGCGACTGTTTGGTGATAATATGCGCGATCTACTTATGGT
GGCATATCTCTGCAAACTCACCCAAACACAACTGATTGTTGCTGAGAAAC
TGCTTTGCGTAGACACTACACCTAAGTACTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:421212..422093-

>Ggra9223.t1 ID=Ggra9223.t1|Name=Ggra9223.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00000075_pilon:421212..422093- (Gracilaria gracilis GNS1m male)
ATGGAGTCCACAGATATCTTCCTTGGCGGGGAAGATAGCGGAGTTCGCGA
GGTTCAGGTTTCACCTGTTGTGTTATTTAACGTGTTGGATCATTTCATTC
GTCGGACGGAAGGCAAAAAGCGAGTGATTGGAACTTTGTTAGGGCGCTTT
ACCGCATCTGGTACGGTATATGTCACTGATTCCTTTCCATTACCTCACTC
TGAGAGTGGCGAAGAAGTCGCAGTTGATACGGATTATCATAAGAACATGT
ACGACCTCCACAATAGGGTGAATTCAGCCGAAGAGCTTGTTGGATGGTAT
GCAACTGGAACTGAAACCGACCTGAAATCTGTTATCATTCACGAGTTTTA
TGGGCGGGAGTGTGTCAATCCGGTTCATCTGCTAGTTGATGCTGAGTTGT
CAAGCGAACGATTTGACATGAGTGCTTTCGTTTCAACCGCATACAAGATT
GATGATCTTGCTCTCAGCTCTGAATTTCGCTCCATCCCAGTTTGCATGAA
ACCAGAAAAGGCCGAGAAAGTCGGTCTTGATGTTCTGTTTAAGAACAGAA
GAAGAGAAGAAGGTGATCTTACTTCCCCTGTGATGGCATCCGAAATTGAA
AACCTCGAGAAGTCTATGGAAAGACTTTTGGATCTTTTGGACACTATTGG
GAAGAATGTAGATGCCGTTGTTGCTGGAGAAGTAGAAGGTGATGTGACAA
CTGGAAGATTTTTAGCAGAAACATTGACAATGGTGCCCAGGATGAATGCA
TCTGATTTCGAGCGACTGTTTGGTGATAATATGCGCGATCTACTTATGGT
GGCATATCTCTGCAAACTCACCCAAACACAACTGATTGTTGCTGAGAAAC
TGCTTTGCGTAGACACTACACCTAAGTACTAA
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