Ggra922.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra922.t1
Unique NameGgra922.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length320
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:538201..539272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra922Ggra922Gracilaria gracilis GNS1m malegenetig00000049_pilon 538201..539272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra922.t1Ggra922.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 538201..539272 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra922.t1.stop1Ggra922.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 538201..538203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra922.t1.CDS1Ggra922.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 538201..538224 -
Ggra922.t1.CDS2Ggra922.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000049_pilon 538337..539272 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra922.t1.exon1Ggra922.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 538201..538224 -
Ggra922.t1.exon2Ggra922.t1.exon2Gracilaria gracilis GNS1m maleexontig00000049_pilon 538337..539272 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra922.t1.intron1Ggra922.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000049_pilon 538225..538336 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra922.t1.start1Ggra922.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 539270..539272 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra922.t1 ID=Ggra922.t1|Name=Ggra922.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=320bp
MGTITGSVTNNVVVDGIACTINGATITGSVEVINGGSLSTTGATQISGGV
LATSSGDISLQGTTTVSGVVSSTSSPSSVVQVGAGVVVGQVSLLNSGSIV
VEGTATSIMNQNSGEITVTGGTVGGISANLGTGDVVLCDADITAVVQLVG
RTGDLSAEESPSCALSTITGGVSVEKGVGDVKLDGASFPSGDLSVVDQSG
DVMLTSAMVSDVIISALTGSVTLTMIDADSDFSVSGVSGSVSLMQSTVSG
DVAILNCGAVSLIDSSFANENALIKGNSGPVVFSLNSDVSVEMVENDDVT
VSDNTVGVASISGNAPGSS*
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spliced messenger RNA

>Ggra922.t1 ID=Ggra922.t1|Name=Ggra922.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000049_pilon:538201..539272- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCACGATCACAGGAAGCGTAACCAACAATGTTGTGGTTGACGGCAT
TGCATGCACCATTAATGGGGCTACTATCACAGGATCCGTTGAAGTTATTA
ATGGAGGATCACTCTCCACTACGGGGGCCACTCAGATCTCTGGGGGCGTC
CTGGCTACATCATCCGGGGACATCAGTTTACAAGGAACAACTACTGTTTC
TGGCGTTGTTTCCTCCACATCGTCGCCCTCCAGCGTTGTGCAAGTGGGCG
CAGGCGTCGTCGTGGGACAGGTGTCGCTCTTGAATTCCGGCTCAATCGTT
GTGGAAGGTACTGCTACATCCATAATGAACCAGAACTCTGGAGAAATCAC
AGTCACAGGCGGAACCGTTGGGGGAATCTCGGCCAATCTGGGCACCGGAG
ATGTGGTGCTGTGTGATGCGGATATCACGGCCGTCGTTCAACTGGTGGGG
CGTACCGGTGACCTTTCCGCGGAGGAATCGCCTTCATGCGCACTGTCCAC
CATCACCGGCGGTGTTTCTGTGGAGAAAGGTGTGGGAGACGTGAAGTTGG
ACGGAGCGAGCTTTCCTTCAGGAGACCTGTCCGTCGTGGACCAGTCTGGA
GATGTGATGCTTACATCGGCCATGGTGAGTGATGTTATCATCTCAGCTCT
AACTGGCTCGGTGACGCTCACCATGATTGACGCGGACAGTGACTTTAGCG
TAAGTGGAGTGTCGGGCAGTGTTTCACTGATGCAGTCGACTGTGAGCGGC
GACGTTGCGATTCTGAACTGTGGAGCGGTTTCGTTGATTGATTCGAGTTT
CGCCAACGAAAACGCTTTGATTAAGGGCAACTCGGGCCCAGTTGTATTCT
CTTTGAACTCTGATGTGTCTGTGGAAATGGTGGAGAACGATGATGTAACT
GTGTCGGACAACACTGTTGGAGTGGCATCGATTTCGGGCAATGCGCCGGG
TTCTAGCTAG
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protein sequence of Ggra922.t1

>Ggra922.t1 ID=Ggra922.t1|Name=Ggra922.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MGTITGSVTNNVVVDGIACTINGATITGSVEVINGGSLSTTGATQISGGV
LATSSGDISLQGTTTVSGVVSSTSSPSSVVQVGAGVVVGQVSLLNSGSIV
VEGTATSIMNQNSGEITVTGGTVGGISANLGTGDVVLCDADITAVVQLVG
RTGDLSAEESPSCALSTITGGVSVEKGVGDVKLDGASFPSGDLSVVDQSG
DVMLTSAMVSDVIISALTGSVTLTMIDADSDFSVSGVSGSVSLMQSTVSG
DVAILNCGAVSLIDSSFANENALIKGNSGPVVFSLNSDVSVEMVENDDVT
VSDNTVGVASISGNAPGSS*
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mRNA from alignment at tig00000049_pilon:538201..539272-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra922.t1 ID=Ggra922.t1|Name=Ggra922.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1072bp|location=Sequence derived from alignment at tig00000049_pilon:538201..539272- (Gracilaria gracilis GNS1m male)
ATGGGCACGATCACAGGAAGCGTAACCAACAATGTTGTGGTTGACGGCAT
TGCATGCACCATTAATGGGGCTACTATCACAGGATCCGTTGAAGTTATTA
ATGGAGGATCACTCTCCACTACGGGGGCCACTCAGATCTCTGGGGGCGTC
CTGGCTACATCATCCGGGGACATCAGTTTACAAGGAACAACTACTGTTTC
TGGCGTTGTTTCCTCCACATCGTCGCCCTCCAGCGTTGTGCAAGTGGGCG
CAGGCGTCGTCGTGGGACAGGTGTCGCTCTTGAATTCCGGCTCAATCGTT
GTGGAAGGTACTGCTACATCCATAATGAACCAGAACTCTGGAGAAATCAC
AGTCACAGGCGGAACCGTTGGGGGAATCTCGGCCAATCTGGGCACCGGAG
ATGTGGTGCTGTGTGATGCGGATATCACGGCCGTCGTTCAACTGGTGGGG
CGTACCGGTGACCTTTCCGCGGAGGAATCGCCTTCATGCGCACTGTCCAC
CATCACCGGCGGTGTTTCTGTGGAGAAAGGTGTGGGAGACGTGAAGTTGG
ACGGAGCGAGCTTTCCTTCAGGAGACCTGTCCGTCGTGGACCAGTCTGGA
GATGTGATGCTTACATCGGCCATGGTGAGTGATGTTATCATCTCAGCTCT
AACTGGCTCGGTGACGCTCACCATGATTGACGCGGACAGTGACTTTAGCG
TAAGTGGAGTGTCGGGCAGTGTTTCACTGATGCAGTCGACTGTGAGCGGC
GACGTTGCGATTCTGAACTGTGGAGCGGTTTCGTTGATTGATTCGAGTTT
CGCCAACGAAAACGCTTTGATTAAGGGCAACTCGGGCCCAGTTGTATTCT
CTTTGAACTCTGATGTGTCTGTGGAAATGGTGGAGAACGATGATGTAACT
GTGTCGGACAACACTGTTGGAGTGGCATCGATTTCGGTGAATACCGGGGG
CGTTTCGATTACTGGTAACACGTTTAGTGAACTGTCGTGCGTAAATAACA
ACCCGGCGCCGACGGGTTCAGGCAACACAGTTACGTTAACTGCTTCAGGG
CAATGCGCCGGGTTCTAGCTAG
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Coding sequence (CDS) from alignment at tig00000049_pilon:538201..539272-

>Ggra922.t1 ID=Ggra922.t1|Name=Ggra922.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=960bp|location=Sequence derived from alignment at tig00000049_pilon:538201..539272- (Gracilaria gracilis GNS1m male)
ATGGGCACGATCACAGGAAGCGTAACCAACAATGTTGTGGTTGACGGCAT
TGCATGCACCATTAATGGGGCTACTATCACAGGATCCGTTGAAGTTATTA
ATGGAGGATCACTCTCCACTACGGGGGCCACTCAGATCTCTGGGGGCGTC
CTGGCTACATCATCCGGGGACATCAGTTTACAAGGAACAACTACTGTTTC
TGGCGTTGTTTCCTCCACATCGTCGCCCTCCAGCGTTGTGCAAGTGGGCG
CAGGCGTCGTCGTGGGACAGGTGTCGCTCTTGAATTCCGGCTCAATCGTT
GTGGAAGGTACTGCTACATCCATAATGAACCAGAACTCTGGAGAAATCAC
AGTCACAGGCGGAACCGTTGGGGGAATCTCGGCCAATCTGGGCACCGGAG
ATGTGGTGCTGTGTGATGCGGATATCACGGCCGTCGTTCAACTGGTGGGG
CGTACCGGTGACCTTTCCGCGGAGGAATCGCCTTCATGCGCACTGTCCAC
CATCACCGGCGGTGTTTCTGTGGAGAAAGGTGTGGGAGACGTGAAGTTGG
ACGGAGCGAGCTTTCCTTCAGGAGACCTGTCCGTCGTGGACCAGTCTGGA
GATGTGATGCTTACATCGGCCATGGTGAGTGATGTTATCATCTCAGCTCT
AACTGGCTCGGTGACGCTCACCATGATTGACGCGGACAGTGACTTTAGCG
TAAGTGGAGTGTCGGGCAGTGTTTCACTGATGCAGTCGACTGTGAGCGGC
GACGTTGCGATTCTGAACTGTGGAGCGGTTTCGTTGATTGATTCGAGTTT
CGCCAACGAAAACGCTTTGATTAAGGGCAACTCGGGCCCAGTTGTATTCT
CTTTGAACTCTGATGTGTCTGTGGAAATGGTGGAGAACGATGATGTAACT
GTGTCGGACAACACTGTTGGAGTGGCATCGATTTCGGGCAATGCGCCGGG
TTCTAGCTAG
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