Ggra9218.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9218.t1
Unique Name	Ggra9218.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	674

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:410900..412921 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708079.1
PFAMs	Glyco_transf_49
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K09668
KEGG Pathway	ko00515,ko01100,map00515,map01100
Evalue	6.63e-32
EggNOG OGs	KOG3765@1\|root,KOG3765@2759\|Eukaryota
Description	protein O-linked glycosylation
COG category	A
CAZy	GT49,GT8
BRITE	ko00000,ko00001,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9218	Ggra9218	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 410900..412921 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9218.t1.stop1	Ggra9218.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 410900..410902 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9218.t1.CDS1	Ggra9218.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 410900..412921 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9218.t1.exon1	Ggra9218.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 410900..412921 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9218.t1.start1	Ggra9218.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 412919..412921 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9218.t1	Ggra9218.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 410900..412921 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:410900..412921-
coding sequence from alignment at tig00000075_pilon:410900..412921-

mRNA sequence

>Ggra9218.t1 ID=Ggra9218.t1|Name=Ggra9218.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=674bp
MQFLPSLLAIVVAVLFHFLLQHFGSSPPLKPEPPTQPKPSRSWTNNTCDP
LEQLRLRPRPFASTCIRQVKASSTTLSLQIRPPHDGKFTVFLQLADAHVD
PIASTSITIPTSSNSHSVMYQAERLQSDTSYFAVLQQRTTTCRMPVFTLP
ENNLVQNPSFETCAKPPFLATRFHEHETPRSWTPFYNGGAVRFCGPFTDP
YDNSSVHTPRSGDCMLLLGPDTRSAWHSFGSQVEMYYGAHQSVRIWEKSK
AAFVSAWYSTSSSQLGSLSDQCKSCSDALSLVISVITEDGHWHDGAIIPI
ESSTDWTKVCTQVVSATPISSVHIFFHFHEHSHGHVLIDDVSVTENSVSE
GIKRPTCHRIELGSPPIQKPPPLPRHLAAAVRPEMSQLTIAVPLTHDRVL
RLEAMSRLYGGGPVVAAVLVRSEHEARIFEQIWRQKPWLRNYVDVSFVKW
GADEPALPINALRNVAIRLAETEFVLMLDVDMTPATGSFECFRNNSRRLL
QTILPKNEKRIAVLPVFITHIHHKPARDKKELLVQLKSSVGTSYCAHSQK
ANRIKRWYSTSEVVETFFTSDYEPYGIARRGLYPMYDERFSGYGFNKISW
TVAAARWGYSFLVLNDAFVTHLNHVENSWVSDINVAHYLVTWRRFLGFVA
DEGSETDQERTLDVQHGIVHSDE*

spliced messenger RNA

>Ggra9218.t1 ID=Ggra9218.t1|Name=Ggra9218.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2022bp|location=Sequence derived from alignment at tig00000075_pilon:410900..412921- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTTCCTACCATCACTTTTGGCCATCGTTGTTGCCGTTCTGTTTCA
CTTCCTTCTACAACATTTTGGATCCTCCCCTCCCCTAAAACCTGAACCAC
CAACTCAGCCCAAGCCATCCCGGTCTTGGACCAATAACACATGTGATCCA
TTGGAGCAACTTCGATTAAGACCTCGTCCATTCGCTTCAACTTGCATTCG
ACAGGTCAAAGCATCGTCTACAACGCTTTCATTGCAAATCCGGCCACCTC
ACGACGGAAAGTTTACAGTCTTTCTACAACTTGCAGACGCGCATGTTGAC
CCCATTGCTTCCACATCCATCACCATTCCGACGTCGAGCAACAGTCATTC
AGTAATGTACCAAGCAGAACGCTTGCAATCGGATACCTCTTACTTTGCCG
TTTTACAGCAACGAACTACAACGTGTCGCATGCCCGTGTTTACGTTGCCC
GAAAATAACCTTGTACAGAATCCCTCCTTCGAGACTTGTGCGAAACCTCC
GTTTCTTGCCACGCGCTTCCATGAGCATGAAACCCCCCGCTCCTGGACGC
CTTTTTACAATGGAGGGGCTGTGCGTTTCTGCGGACCATTTACTGACCCC
TATGATAACTCCTCTGTGCATACCCCACGCTCTGGCGATTGTATGCTTTT
GCTGGGTCCTGATACTCGAAGCGCTTGGCACAGTTTTGGTTCGCAGGTGG
AGATGTATTACGGCGCACACCAATCTGTAAGGATTTGGGAAAAGTCAAAA
GCTGCTTTCGTTAGCGCGTGGTACTCCACTTCGAGTAGTCAGTTAGGGTC
GTTATCTGATCAATGCAAAAGTTGTTCTGACGCTCTTTCGCTAGTGATCA
GCGTGATTACTGAAGACGGGCATTGGCACGATGGTGCAATTATTCCTATT
GAGAGCAGTACTGACTGGACCAAGGTTTGCACTCAAGTGGTCTCCGCAAC
TCCTATATCGTCCGTTCATATCTTCTTCCACTTCCACGAGCATTCCCACG
GACATGTTCTCATTGATGATGTCTCTGTAACCGAGAACAGCGTATCCGAG
GGCATTAAACGTCCAACTTGCCATCGAATTGAATTAGGATCGCCTCCAAT
CCAGAAACCACCACCCCTTCCACGCCATCTAGCGGCGGCAGTGCGCCCAG
AAATGTCGCAGTTAACGATTGCCGTGCCCCTCACTCATGATCGAGTACTC
AGACTGGAAGCCATGTCTCGTTTGTACGGAGGGGGCCCAGTTGTAGCTGC
TGTACTGGTTCGAAGTGAACACGAGGCGCGCATCTTTGAGCAAATCTGGC
GGCAGAAGCCGTGGCTACGAAACTATGTAGACGTCAGTTTCGTGAAATGG
GGAGCAGACGAGCCTGCACTTCCAATCAACGCCTTGAGAAATGTGGCTAT
TCGTCTTGCGGAAACAGAATTCGTACTGATGTTGGACGTGGATATGACTC
CAGCCACTGGATCATTTGAATGCTTTCGAAACAACTCTAGAAGGTTACTA
CAAACCATTCTTCCCAAAAACGAAAAAAGAATCGCAGTACTTCCGGTGTT
TATCACTCACATTCATCACAAGCCTGCTCGAGACAAAAAAGAACTTCTAG
TTCAGCTGAAGTCCAGTGTGGGGACCAGTTATTGTGCACACTCTCAGAAA
GCAAATCGAATCAAGAGATGGTATTCTACTTCTGAAGTGGTGGAAACTTT
TTTCACTAGCGACTACGAACCGTACGGCATTGCACGGCGGGGCTTGTATC
CTATGTATGACGAACGCTTCAGCGGGTACGGCTTTAATAAAATATCCTGG
ACCGTTGCTGCTGCAAGATGGGGATACAGCTTTCTAGTTCTAAACGATGC
CTTTGTTACTCACCTTAACCATGTGGAAAACTCATGGGTATCGGATATCA
ATGTGGCTCATTATCTGGTGACATGGAGGCGATTCCTCGGCTTTGTCGCA
GACGAAGGATCCGAAACAGATCAAGAGCGAACGCTTGACGTTCAGCACGG
AATTGTTCATAGTGATGAATAG

protein sequence of Ggra9218.t1

>Ggra9218.t1 ID=Ggra9218.t1|Name=Ggra9218.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=674bp
MQFLPSLLAIVVAVLFHFLLQHFGSSPPLKPEPPTQPKPSRSWTNNTCDP
LEQLRLRPRPFASTCIRQVKASSTTLSLQIRPPHDGKFTVFLQLADAHVD
PIASTSITIPTSSNSHSVMYQAERLQSDTSYFAVLQQRTTTCRMPVFTLP
ENNLVQNPSFETCAKPPFLATRFHEHETPRSWTPFYNGGAVRFCGPFTDP
YDNSSVHTPRSGDCMLLLGPDTRSAWHSFGSQVEMYYGAHQSVRIWEKSK
AAFVSAWYSTSSSQLGSLSDQCKSCSDALSLVISVITEDGHWHDGAIIPI
ESSTDWTKVCTQVVSATPISSVHIFFHFHEHSHGHVLIDDVSVTENSVSE
GIKRPTCHRIELGSPPIQKPPPLPRHLAAAVRPEMSQLTIAVPLTHDRVL
RLEAMSRLYGGGPVVAAVLVRSEHEARIFEQIWRQKPWLRNYVDVSFVKW
GADEPALPINALRNVAIRLAETEFVLMLDVDMTPATGSFECFRNNSRRLL
QTILPKNEKRIAVLPVFITHIHHKPARDKKELLVQLKSSVGTSYCAHSQK
ANRIKRWYSTSEVVETFFTSDYEPYGIARRGLYPMYDERFSGYGFNKISW
TVAAARWGYSFLVLNDAFVTHLNHVENSWVSDINVAHYLVTWRRFLGFVA
DEGSETDQERTLDVQHGIVHSDE*

mRNA from alignment at tig00000075_pilon:410900..412921-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9218.t1 ID=Ggra9218.t1|Name=Ggra9218.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2022bp|location=Sequence derived from alignment at tig00000075_pilon:410900..412921- (Gracilaria gracilis GNS1m male)
ATGCAGTTCCTACCATCACTTTTGGCCATCGTTGTTGCCGTTCTGTTTCA
CTTCCTTCTACAACATTTTGGATCCTCCCCTCCCCTAAAACCTGAACCAC
CAACTCAGCCCAAGCCATCCCGGTCTTGGACCAATAACACATGTGATCCA
TTGGAGCAACTTCGATTAAGACCTCGTCCATTCGCTTCAACTTGCATTCG
ACAGGTCAAAGCATCGTCTACAACGCTTTCATTGCAAATCCGGCCACCTC
ACGACGGAAAGTTTACAGTCTTTCTACAACTTGCAGACGCGCATGTTGAC
CCCATTGCTTCCACATCCATCACCATTCCGACGTCGAGCAACAGTCATTC
AGTAATGTACCAAGCAGAACGCTTGCAATCGGATACCTCTTACTTTGCCG
TTTTACAGCAACGAACTACAACGTGTCGCATGCCCGTGTTTACGTTGCCC
GAAAATAACCTTGTACAGAATCCCTCCTTCGAGACTTGTGCGAAACCTCC
GTTTCTTGCCACGCGCTTCCATGAGCATGAAACCCCCCGCTCCTGGACGC
CTTTTTACAATGGAGGGGCTGTGCGTTTCTGCGGACCATTTACTGACCCC
TATGATAACTCCTCTGTGCATACCCCACGCTCTGGCGATTGTATGCTTTT
GCTGGGTCCTGATACTCGAAGCGCTTGGCACAGTTTTGGTTCGCAGGTGG
AGATGTATTACGGCGCACACCAATCTGTAAGGATTTGGGAAAAGTCAAAA
GCTGCTTTCGTTAGCGCGTGGTACTCCACTTCGAGTAGTCAGTTAGGGTC
GTTATCTGATCAATGCAAAAGTTGTTCTGACGCTCTTTCGCTAGTGATCA
GCGTGATTACTGAAGACGGGCATTGGCACGATGGTGCAATTATTCCTATT
GAGAGCAGTACTGACTGGACCAAGGTTTGCACTCAAGTGGTCTCCGCAAC
TCCTATATCGTCCGTTCATATCTTCTTCCACTTCCACGAGCATTCCCACG
GACATGTTCTCATTGATGATGTCTCTGTAACCGAGAACAGCGTATCCGAG
GGCATTAAACGTCCAACTTGCCATCGAATTGAATTAGGATCGCCTCCAAT
CCAGAAACCACCACCCCTTCCACGCCATCTAGCGGCGGCAGTGCGCCCAG
AAATGTCGCAGTTAACGATTGCCGTGCCCCTCACTCATGATCGAGTACTC
AGACTGGAAGCCATGTCTCGTTTGTACGGAGGGGGCCCAGTTGTAGCTGC
TGTACTGGTTCGAAGTGAACACGAGGCGCGCATCTTTGAGCAAATCTGGC
GGCAGAAGCCGTGGCTACGAAACTATGTAGACGTCAGTTTCGTGAAATGG
GGAGCAGACGAGCCTGCACTTCCAATCAACGCCTTGAGAAATGTGGCTAT
TCGTCTTGCGGAAACAGAATTCGTACTGATGTTGGACGTGGATATGACTC
CAGCCACTGGATCATTTGAATGCTTTCGAAACAACTCTAGAAGGTTACTA
CAAACCATTCTTCCCAAAAACGAAAAAAGAATCGCAGTACTTCCGGTGTT
TATCACTCACATTCATCACAAGCCTGCTCGAGACAAAAAAGAACTTCTAG
TTCAGCTGAAGTCCAGTGTGGGGACCAGTTATTGTGCACACTCTCAGAAA
GCAAATCGAATCAAGAGATGGTATTCTACTTCTGAAGTGGTGGAAACTTT
TTTCACTAGCGACTACGAACCGTACGGCATTGCACGGCGGGGCTTGTATC
CTATGTATGACGAACGCTTCAGCGGGTACGGCTTTAATAAAATATCCTGG
ACCGTTGCTGCTGCAAGATGGGGATACAGCTTTCTAGTTCTAAACGATGC
CTTTGTTACTCACCTTAACCATGTGGAAAACTCATGGGTATCGGATATCA
ATGTGGCTCATTATCTGGTGACATGGAGGCGATTCCTCGGCTTTGTCGCA
GACGAAGGATCCGAAACAGATCAAGAGCGAACGCTTGACGTTCAGCACGG
AATTGTTCATAGTGATGAATAG

Coding sequence (CDS) from alignment at tig00000075_pilon:410900..412921-

>Ggra9218.t1 ID=Ggra9218.t1|Name=Ggra9218.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2022bp|location=Sequence derived from alignment at tig00000075_pilon:410900..412921- (Gracilaria gracilis GNS1m male)
ATGCAGTTCCTACCATCACTTTTGGCCATCGTTGTTGCCGTTCTGTTTCA
CTTCCTTCTACAACATTTTGGATCCTCCCCTCCCCTAAAACCTGAACCAC
CAACTCAGCCCAAGCCATCCCGGTCTTGGACCAATAACACATGTGATCCA
TTGGAGCAACTTCGATTAAGACCTCGTCCATTCGCTTCAACTTGCATTCG
ACAGGTCAAAGCATCGTCTACAACGCTTTCATTGCAAATCCGGCCACCTC
ACGACGGAAAGTTTACAGTCTTTCTACAACTTGCAGACGCGCATGTTGAC
CCCATTGCTTCCACATCCATCACCATTCCGACGTCGAGCAACAGTCATTC
AGTAATGTACCAAGCAGAACGCTTGCAATCGGATACCTCTTACTTTGCCG
TTTTACAGCAACGAACTACAACGTGTCGCATGCCCGTGTTTACGTTGCCC
GAAAATAACCTTGTACAGAATCCCTCCTTCGAGACTTGTGCGAAACCTCC
GTTTCTTGCCACGCGCTTCCATGAGCATGAAACCCCCCGCTCCTGGACGC
CTTTTTACAATGGAGGGGCTGTGCGTTTCTGCGGACCATTTACTGACCCC
TATGATAACTCCTCTGTGCATACCCCACGCTCTGGCGATTGTATGCTTTT
GCTGGGTCCTGATACTCGAAGCGCTTGGCACAGTTTTGGTTCGCAGGTGG
AGATGTATTACGGCGCACACCAATCTGTAAGGATTTGGGAAAAGTCAAAA
GCTGCTTTCGTTAGCGCGTGGTACTCCACTTCGAGTAGTCAGTTAGGGTC
GTTATCTGATCAATGCAAAAGTTGTTCTGACGCTCTTTCGCTAGTGATCA
GCGTGATTACTGAAGACGGGCATTGGCACGATGGTGCAATTATTCCTATT
GAGAGCAGTACTGACTGGACCAAGGTTTGCACTCAAGTGGTCTCCGCAAC
TCCTATATCGTCCGTTCATATCTTCTTCCACTTCCACGAGCATTCCCACG
GACATGTTCTCATTGATGATGTCTCTGTAACCGAGAACAGCGTATCCGAG
GGCATTAAACGTCCAACTTGCCATCGAATTGAATTAGGATCGCCTCCAAT
CCAGAAACCACCACCCCTTCCACGCCATCTAGCGGCGGCAGTGCGCCCAG
AAATGTCGCAGTTAACGATTGCCGTGCCCCTCACTCATGATCGAGTACTC
AGACTGGAAGCCATGTCTCGTTTGTACGGAGGGGGCCCAGTTGTAGCTGC
TGTACTGGTTCGAAGTGAACACGAGGCGCGCATCTTTGAGCAAATCTGGC
GGCAGAAGCCGTGGCTACGAAACTATGTAGACGTCAGTTTCGTGAAATGG
GGAGCAGACGAGCCTGCACTTCCAATCAACGCCTTGAGAAATGTGGCTAT
TCGTCTTGCGGAAACAGAATTCGTACTGATGTTGGACGTGGATATGACTC
CAGCCACTGGATCATTTGAATGCTTTCGAAACAACTCTAGAAGGTTACTA
CAAACCATTCTTCCCAAAAACGAAAAAAGAATCGCAGTACTTCCGGTGTT
TATCACTCACATTCATCACAAGCCTGCTCGAGACAAAAAAGAACTTCTAG
TTCAGCTGAAGTCCAGTGTGGGGACCAGTTATTGTGCACACTCTCAGAAA
GCAAATCGAATCAAGAGATGGTATTCTACTTCTGAAGTGGTGGAAACTTT
TTTCACTAGCGACTACGAACCGTACGGCATTGCACGGCGGGGCTTGTATC
CTATGTATGACGAACGCTTCAGCGGGTACGGCTTTAATAAAATATCCTGG
ACCGTTGCTGCTGCAAGATGGGGATACAGCTTTCTAGTTCTAAACGATGC
CTTTGTTACTCACCTTAACCATGTGGAAAACTCATGGGTATCGGATATCA
ATGTGGCTCATTATCTGGTGACATGGAGGCGATTCCTCGGCTTTGTCGCA
GACGAAGGATCCGAAACAGATCAAGAGCGAACGCTTGACGTTCAGCACGG
AATTGTTCATAGTGATGAATAG