Ggra9213.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9213.t1
Unique NameGgra9213.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length356
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:397928..398995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706482.1
PFAMsRRM_1,WW
Max annot lvl2759|Eukaryota
KEGG rclassRC00061
KEGG koko:K03942,ko:K14411
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko03015,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map03015,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Evalue4.83e-45
EggNOG OGsKOG4205@1|root,KOG4205@2759|Eukaryota
EC1.6.5.3,1.6.99.3
Descriptionpoly(U) RNA binding
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9213Ggra9213Gracilaria gracilis GNS1m malegenetig00000075_pilon 397928..398995 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9213.t1.start1Ggra9213.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 397928..397930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9213.t1.CDS1Ggra9213.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 397928..398995 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9213.t1.exon1Ggra9213.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 397928..398995 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9213.t1.stop1Ggra9213.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 398993..398995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9213.t1Ggra9213.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 397928..398995 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9213.t1 ID=Ggra9213.t1|Name=Ggra9213.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=356bp
MRDRLTGHPRGFGFVTYDDQLVAERVAAEFHELDGRQVEAKIAVPRSECV
PPSRNNAWRATKKVFIGGLPATCRESDLHAHFIRFGDIAECQVMYDHQTG
NSRGFGFVTFTSELTVDKVVDIDHEIMQKHVEVKRAEPKQALEARRGREA
AGAALPFSSSQPSSSSFNVSPQKQHTHLPQTSQTLQSHLASATSIPYASF
PSALPNAAPLSMARSPPTQAPFQSFSPWSGVFSSGAGSSWNAVQSSSAFV
STKMKEAVSMRNSHSAATGATSISPPSSSIASQSSPRATPAGMGFFTPAQ
PYSPDLAQCAYDAFYSPSAPLTSFASDLASVIPSARTERRFHPYSTRERI
ERSYR*
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spliced messenger RNA

>Ggra9213.t1 ID=Ggra9213.t1|Name=Ggra9213.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000075_pilon:397928..398995+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
aTGCGCGACAGACTCACTGGCCATCCGCGCGGCTTTGGCTTCGTCACGTA
CGATGATCAACTCGTGGCCGAGCGTGTTGCCGCAGAGTTTCATGAGCTGG
ATGGGCGCCAGGTGGAGGCAAAGATTGCCGTGCCGCGTTCCGAGTGCGTG
CCACCTTCCCGGAACAATGCGTGGCGCGCCACCAAGAAGGTGTTCATTGG
CGGCTTGCCGGCCACCTGTCGCGAGTCTGACCTTCACGCTCACTTCATTC
GTTTCGGTGATATCGCCGAATGTCAGGTCATGTACGACCATCAGACGGGC
AATTCCAGGGGCTTCGGTTTTGTCACTTTCACCTCCGAACTCACTGTTGA
CAAGGTGGTGGACATTGATCATGAGATCATGCAAAAGCATGTCGAGGTGA
AGCGTGCTGAACCCAAGCAAGCGCTTGAGGCACGTCGCGGACGTGAGGCA
GCTGGCGCAGCTCTACCGTTTTCATCATCGCAACCGTCATCCTCATCGTT
TAACGTGTCGCCACAGAAGCAACACACTCATCTTCCGCAGACTTCACAAA
CCTTGCAATCACATCTTGCCTCTGCCACTTCTATTCCCTACGCCTCGTTT
CCCTCCGCCTTGCCAAACGCCGCCCCTCTTTCTATGGCGCGCTCACCGCC
TACACAAGCACCGTTCCAGTCATTCTCACCGTGGTCCGGCGTGTTCTCAT
CCGGCGCAGGTTCTAGTTGGAATGCGGTTCAATCATCGTCTGCGTTTGTG
TCCACCAAGATGAAGGAGGCTGTGTCAATGCGCAACTCTCATTCTGCTGC
TACAGGAGCAACATCAATATCACCCCCTTCCAGTTCAATAGCGTCTCAAT
CGTCTCCTCGTGCTACACCGGCAGGAATGGGATTCTTCACGCCGGCACAA
CCTTATTCTCCGGATCTTGCTCAATGTGCTTATGATGCTTTTTATTCGCC
GTCTGCTCCGCTTACCTCTTTTGCGAGCGATCTTGCAAGTGTGATACCTA
GCGCTAGAACAGAACGGAGATTTCATCCGTATTCCACGAGGGAGCGAATC
GAGCGTTCATATCGTTGA
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protein sequence of Ggra9213.t1

>Ggra9213.t1 ID=Ggra9213.t1|Name=Ggra9213.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=356bp
MRDRLTGHPRGFGFVTYDDQLVAERVAAEFHELDGRQVEAKIAVPRSECV
PPSRNNAWRATKKVFIGGLPATCRESDLHAHFIRFGDIAECQVMYDHQTG
NSRGFGFVTFTSELTVDKVVDIDHEIMQKHVEVKRAEPKQALEARRGREA
AGAALPFSSSQPSSSSFNVSPQKQHTHLPQTSQTLQSHLASATSIPYASF
PSALPNAAPLSMARSPPTQAPFQSFSPWSGVFSSGAGSSWNAVQSSSAFV
STKMKEAVSMRNSHSAATGATSISPPSSSIASQSSPRATPAGMGFFTPAQ
PYSPDLAQCAYDAFYSPSAPLTSFASDLASVIPSARTERRFHPYSTRERI
ERSYR*
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mRNA from alignment at tig00000075_pilon:397928..398995+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9213.t1 ID=Ggra9213.t1|Name=Ggra9213.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000075_pilon:397928..398995+ (Gracilaria gracilis GNS1m male)
aTGCGCGACAGACTCACTGGCCATCCGCGCGGCTTTGGCTTCGTCACGTA
CGATGATCAACTCGTGGCCGAGCGTGTTGCCGCAGAGTTTCATGAGCTGG
ATGGGCGCCAGGTGGAGGCAAAGATTGCCGTGCCGCGTTCCGAGTGCGTG
CCACCTTCCCGGAACAATGCGTGGCGCGCCACCAAGAAGGTGTTCATTGG
CGGCTTGCCGGCCACCTGTCGCGAGTCTGACCTTCACGCTCACTTCATTC
GTTTCGGTGATATCGCCGAATGTCAGGTCATGTACGACCATCAGACGGGC
AATTCCAGGGGCTTCGGTTTTGTCACTTTCACCTCCGAACTCACTGTTGA
CAAGGTGGTGGACATTGATCATGAGATCATGCAAAAGCATGTCGAGGTGA
AGCGTGCTGAACCCAAGCAAGCGCTTGAGGCACGTCGCGGACGTGAGGCA
GCTGGCGCAGCTCTACCGTTTTCATCATCGCAACCGTCATCCTCATCGTT
TAACGTGTCGCCACAGAAGCAACACACTCATCTTCCGCAGACTTCACAAA
CCTTGCAATCACATCTTGCCTCTGCCACTTCTATTCCCTACGCCTCGTTT
CCCTCCGCCTTGCCAAACGCCGCCCCTCTTTCTATGGCGCGCTCACCGCC
TACACAAGCACCGTTCCAGTCATTCTCACCGTGGTCCGGCGTGTTCTCAT
CCGGCGCAGGTTCTAGTTGGAATGCGGTTCAATCATCGTCTGCGTTTGTG
TCCACCAAGATGAAGGAGGCTGTGTCAATGCGCAACTCTCATTCTGCTGC
TACAGGAGCAACATCAATATCACCCCCTTCCAGTTCAATAGCGTCTCAAT
CGTCTCCTCGTGCTACACCGGCAGGAATGGGATTCTTCACGCCGGCACAA
CCTTATTCTCCGGATCTTGCTCAATGTGCTTATGATGCTTTTTATTCGCC
GTCTGCTCCGCTTACCTCTTTTGCGAGCGATCTTGCAAGTGTGATACCTA
GCGCTAGAACAGAACGGAGATTTCATCCGTATTCCACGAGGGAGCGAATC
GAGCGTTCATATCGTTGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:397928..398995+

>Ggra9213.t1 ID=Ggra9213.t1|Name=Ggra9213.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1068bp|location=Sequence derived from alignment at tig00000075_pilon:397928..398995+ (Gracilaria gracilis GNS1m male)
aTGCGCGACAGACTCACTGGCCATCCGCGCGGCTTTGGCTTCGTCACGTA
CGATGATCAACTCGTGGCCGAGCGTGTTGCCGCAGAGTTTCATGAGCTGG
ATGGGCGCCAGGTGGAGGCAAAGATTGCCGTGCCGCGTTCCGAGTGCGTG
CCACCTTCCCGGAACAATGCGTGGCGCGCCACCAAGAAGGTGTTCATTGG
CGGCTTGCCGGCCACCTGTCGCGAGTCTGACCTTCACGCTCACTTCATTC
GTTTCGGTGATATCGCCGAATGTCAGGTCATGTACGACCATCAGACGGGC
AATTCCAGGGGCTTCGGTTTTGTCACTTTCACCTCCGAACTCACTGTTGA
CAAGGTGGTGGACATTGATCATGAGATCATGCAAAAGCATGTCGAGGTGA
AGCGTGCTGAACCCAAGCAAGCGCTTGAGGCACGTCGCGGACGTGAGGCA
GCTGGCGCAGCTCTACCGTTTTCATCATCGCAACCGTCATCCTCATCGTT
TAACGTGTCGCCACAGAAGCAACACACTCATCTTCCGCAGACTTCACAAA
CCTTGCAATCACATCTTGCCTCTGCCACTTCTATTCCCTACGCCTCGTTT
CCCTCCGCCTTGCCAAACGCCGCCCCTCTTTCTATGGCGCGCTCACCGCC
TACACAAGCACCGTTCCAGTCATTCTCACCGTGGTCCGGCGTGTTCTCAT
CCGGCGCAGGTTCTAGTTGGAATGCGGTTCAATCATCGTCTGCGTTTGTG
TCCACCAAGATGAAGGAGGCTGTGTCAATGCGCAACTCTCATTCTGCTGC
TACAGGAGCAACATCAATATCACCCCCTTCCAGTTCAATAGCGTCTCAAT
CGTCTCCTCGTGCTACACCGGCAGGAATGGGATTCTTCACGCCGGCACAA
CCTTATTCTCCGGATCTTGCTCAATGTGCTTATGATGCTTTTTATTCGCC
GTCTGCTCCGCTTACCTCTTTTGCGAGCGATCTTGCAAGTGTGATACCTA
GCGCTAGAACAGAACGGAGATTTCATCCGTATTCCACGAGGGAGCGAATC
GAGCGTTCATATCGTTGA
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