Ggra9212.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9212.t1
Unique NameGgra9212.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length298
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:396156..397049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708568.1
Preferred nameCBR1
PFAMsFAD_binding_6,Myb_DNA-binding,NAD_binding_1
Max annot lvl2759|Eukaryota
KEGG koko:K00326,ko:K11865,ko:K12133
KEGG ReactionR00100
KEGG Pathwayko00520,ko04712,map00520,map04712
GOsGO:0000166,GO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0004128,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005886,GO:0006091,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009505,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016491,GO:0016651,GO:0016653,GO:0019867,GO:0022900,GO:0030312,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0051287,GO:0055114,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901265,GO:1901360,GO:1901363
Evalue1.09e-24
EggNOG OGsCOG0543@1|root,KOG0724@1|root,KOG0534@2759|Eukaryota,KOG0724@2759|Eukaryota
EC1.6.2.2
Descriptionubiquitin modification-dependent histone binding
COG categoryK
BiGG ReactioniMM904.YIL043C
BRITEko00000,ko00001,ko01000,ko01002,ko03000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9212Ggra9212Gracilaria gracilis GNS1m malegenetig00000075_pilon 396156..397049 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9212.t1.stop1Ggra9212.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 396156..396158 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9212.t1.CDS1Ggra9212.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 396156..397049 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9212.t1.exon1Ggra9212.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 396156..397049 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9212.t1.start1Ggra9212.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 397047..397049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9212.t1Ggra9212.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 396156..397049 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9212.t1 ID=Ggra9212.t1|Name=Ggra9212.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=298bp
MDSFEAHSEWMRHAVLPPDLQQLDQCQPPSLTMSEPFAHQPIPLFDLPAS
PTAPDVHTASCSGATHLELAESVAERTDDHSASLLMPVADCDADAYTNTS
PALTLFHLPEQAVFAQQQHAFSKLHHSYFATNKERIKHELEMALQKPAQT
TPSRTNSERSFVSTQANSSRSVHSPIANKRVSKTKRSKTNKSKRTRAPAR
PWTEEEHQRFKESLELYGRNWEQCAKYIGTRRAQLVRSHAQKYLIKLWKL
GLPLPNKVAESGRGYTLSGKPLLADSASAKSYLTRISGPTMPLNQNN*
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spliced messenger RNA

>Ggra9212.t1 ID=Ggra9212.t1|Name=Ggra9212.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000075_pilon:396156..397049- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCCTTCGAAGCACACTCTGAATGGATGCGCCATGCCGTTTTGCC
GCCCGACCTTCAACAACTCGACCAATGTCAACCTCCTTCTCTCACCATGT
CAGAGCCATTCGCGCACCAGCCAATTCCTTTGTTCGACCTTCCAGCCTCG
CCCACCGCACCTGACGTCCATACTGCCAGCTGCAGCGGAGCCACGCATCT
GGAGCTTGCCGAAAGCGTTGCAGAGCGCACCGATGACCACAGCGCGTCCT
TGTTGATGCCCGTTGCCGACTGTGATGCCGATGCCTACACCAACACATCG
CCTGCGCTCACTTTGTTCCATCTACCGGAGCAAGCCGTCTTTGCGCAGCA
GCAGCACGCCTTTTCGAAGCTTCATCACTCTTACTTTGCAACCAACAAGG
AACGAATCAAGCATGAGCTGGAAATGGCGTTGCAAAAGCCCGCTCAAACA
ACTCCATCACGCACTAACTCAGAGCGCAGCTTCGTGTCAACACAGGCCAA
TTCGTCGCGCAGTGTGCACTCACCGATTGCAAACAAACGTGTCAGCAAGA
CCAAACGCTCAAAGACTAACAAATCGAAGCGAACAAGAGCGCCCGCCAGA
CCGTGGACAGAAGAAGAGCACCAGCGTTTCAAAGAAAGCTTGGAGCTATA
CGGCAGGAACTGGGAGCAATGTGCAAAGTACATCGGCACCAGACGCGCAC
AATTGGTGAGAAGTCACGCTCAGAAGTATCTCATCAAGCTGTGGAAGCTT
GGACTACCACTGCCGAATAAGGTGGCCGAAAGTGGTAGAGGCTATACGCT
GTCCGGAAAACCGTTGCTCGCCGACTCGGCGTCGGCCAAGTCGTATCTCA
CCAGGATCTCTGGCCCGACCATGCCGCTCAACCAGAACAACTGA
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protein sequence of Ggra9212.t1

>Ggra9212.t1 ID=Ggra9212.t1|Name=Ggra9212.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=298bp
MDSFEAHSEWMRHAVLPPDLQQLDQCQPPSLTMSEPFAHQPIPLFDLPAS
PTAPDVHTASCSGATHLELAESVAERTDDHSASLLMPVADCDADAYTNTS
PALTLFHLPEQAVFAQQQHAFSKLHHSYFATNKERIKHELEMALQKPAQT
TPSRTNSERSFVSTQANSSRSVHSPIANKRVSKTKRSKTNKSKRTRAPAR
PWTEEEHQRFKESLELYGRNWEQCAKYIGTRRAQLVRSHAQKYLIKLWKL
GLPLPNKVAESGRGYTLSGKPLLADSASAKSYLTRISGPTMPLNQNN*
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mRNA from alignment at tig00000075_pilon:396156..397049-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9212.t1 ID=Ggra9212.t1|Name=Ggra9212.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000075_pilon:396156..397049- (Gracilaria gracilis GNS1m male)
ATGGACTCCTTCGAAGCACACTCTGAATGGATGCGCCATGCCGTTTTGCC
GCCCGACCTTCAACAACTCGACCAATGTCAACCTCCTTCTCTCACCATGT
CAGAGCCATTCGCGCACCAGCCAATTCCTTTGTTCGACCTTCCAGCCTCG
CCCACCGCACCTGACGTCCATACTGCCAGCTGCAGCGGAGCCACGCATCT
GGAGCTTGCCGAAAGCGTTGCAGAGCGCACCGATGACCACAGCGCGTCCT
TGTTGATGCCCGTTGCCGACTGTGATGCCGATGCCTACACCAACACATCG
CCTGCGCTCACTTTGTTCCATCTACCGGAGCAAGCCGTCTTTGCGCAGCA
GCAGCACGCCTTTTCGAAGCTTCATCACTCTTACTTTGCAACCAACAAGG
AACGAATCAAGCATGAGCTGGAAATGGCGTTGCAAAAGCCCGCTCAAACA
ACTCCATCACGCACTAACTCAGAGCGCAGCTTCGTGTCAACACAGGCCAA
TTCGTCGCGCAGTGTGCACTCACCGATTGCAAACAAACGTGTCAGCAAGA
CCAAACGCTCAAAGACTAACAAATCGAAGCGAACAAGAGCGCCCGCCAGA
CCGTGGACAGAAGAAGAGCACCAGCGTTTCAAAGAAAGCTTGGAGCTATA
CGGCAGGAACTGGGAGCAATGTGCAAAGTACATCGGCACCAGACGCGCAC
AATTGGTGAGAAGTCACGCTCAGAAGTATCTCATCAAGCTGTGGAAGCTT
GGACTACCACTGCCGAATAAGGTGGCCGAAAGTGGTAGAGGCTATACGCT
GTCCGGAAAACCGTTGCTCGCCGACTCGGCGTCGGCCAAGTCGTATCTCA
CCAGGATCTCTGGCCCGACCATGCCGCTCAACCAGAACAACTGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:396156..397049-

>Ggra9212.t1 ID=Ggra9212.t1|Name=Ggra9212.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00000075_pilon:396156..397049- (Gracilaria gracilis GNS1m male)
ATGGACTCCTTCGAAGCACACTCTGAATGGATGCGCCATGCCGTTTTGCC
GCCCGACCTTCAACAACTCGACCAATGTCAACCTCCTTCTCTCACCATGT
CAGAGCCATTCGCGCACCAGCCAATTCCTTTGTTCGACCTTCCAGCCTCG
CCCACCGCACCTGACGTCCATACTGCCAGCTGCAGCGGAGCCACGCATCT
GGAGCTTGCCGAAAGCGTTGCAGAGCGCACCGATGACCACAGCGCGTCCT
TGTTGATGCCCGTTGCCGACTGTGATGCCGATGCCTACACCAACACATCG
CCTGCGCTCACTTTGTTCCATCTACCGGAGCAAGCCGTCTTTGCGCAGCA
GCAGCACGCCTTTTCGAAGCTTCATCACTCTTACTTTGCAACCAACAAGG
AACGAATCAAGCATGAGCTGGAAATGGCGTTGCAAAAGCCCGCTCAAACA
ACTCCATCACGCACTAACTCAGAGCGCAGCTTCGTGTCAACACAGGCCAA
TTCGTCGCGCAGTGTGCACTCACCGATTGCAAACAAACGTGTCAGCAAGA
CCAAACGCTCAAAGACTAACAAATCGAAGCGAACAAGAGCGCCCGCCAGA
CCGTGGACAGAAGAAGAGCACCAGCGTTTCAAAGAAAGCTTGGAGCTATA
CGGCAGGAACTGGGAGCAATGTGCAAAGTACATCGGCACCAGACGCGCAC
AATTGGTGAGAAGTCACGCTCAGAAGTATCTCATCAAGCTGTGGAAGCTT
GGACTACCACTGCCGAATAAGGTGGCCGAAAGTGGTAGAGGCTATACGCT
GTCCGGAAAACCGTTGCTCGCCGACTCGGCGTCGGCCAAGTCGTATCTCA
CCAGGATCTCTGGCCCGACCATGCCGCTCAACCAGAACAACTGA
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