Ggra9210.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9210.t1
Unique NameGgra9210.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length424
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:393900..395171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7029.ACYPI001612-PA
Preferred nameMGAT1
PFAMsGNT-I
Max annot lvl33208|Metazoa
KEGG koko:K00726
KEGG ReactionR05983
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
GOsGO:0000139,GO:0001701,GO:0002252,GO:0002376,GO:0003002,GO:0003674,GO:0003824,GO:0003827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005975,GO:0006040,GO:0006047,GO:0006049,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007568,GO:0007610,GO:0007626,GO:0008150,GO:0008152,GO:0008194,GO:0008340,GO:0008344,GO:0008375,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009227,GO:0009790,GO:0009792,GO:0009987,GO:0010259,GO:0012505,GO:0016020,GO:0016021,GO:0016319,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019439,GO:0019538,GO:0030534,GO:0031090,GO:0031224,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034655,GO:0034656,GO:0035010,GO:0035282,GO:0035283,GO:0035284,GO:0036211,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046348,GO:0046483,GO:0046700,GO:0048471,GO:0048513,GO:0048731,GO:0048856,GO:0055086,GO:0060322,GO:0070085,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Evalue8.59e-76
EggNOG OGsKOG1413@1|root,KOG1413@2759|Eukaryota,38PAJ@33154|Opisthokonta,3BJM1@33208|Metazoa,3CTXT@33213|Bilateria,41U3R@6656|Arthropoda,3SJY6@50557|Insecta,3E9IH@33342|Paraneoptera
EC2.4.1.101
DescriptionGNT-I family
COG categoryG
CAZyGT13
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9210Ggra9210Gracilaria gracilis GNS1m malegenetig00000075_pilon 393900..395171 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9210.t1.start1Ggra9210.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 393900..393902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9210.t1.CDS1Ggra9210.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 393900..395171 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9210.t1.exon1Ggra9210.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 393900..395171 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9210.t1.stop1Ggra9210.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 395169..395171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9210.t1Ggra9210.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 393900..395171 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9210.t1 ID=Ggra9210.t1|Name=Ggra9210.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=424bp
MTCADGECQSLRPSSPISPSRIVRRGLVWLSRFLLVAVFFLSKAKLVTIE
PPFTSTSTSSLLHQSTAVLLITHSRPHYLNRSLTSLLRYHPNTQEFPVVV
SKDQQDGEHAHIDSLLEHFAHRAERQGVPFYTWAHAKCYAEQPDEEPAFV
DAAAYRRITRHYYWALSTLFSTPLAAHQIDRVIILEDDMEIASDTLEYFK
AFTPMLESDPSLFCISAWNDNGIQTLNLNNSQFHRTDFFPGLGWMLTRAI
WHELQPKWPSIYWDDWVRHPEQTKHRHCIRPEVSRTANFGEKGVSQSFHF
QKHVSQVLLSQQAVDFSSLNLSYLHADQYDQLIFGRMRKAVQLRFSNYLT
SRPQDSDVIAFYPDDNMEAISRRTGIMGDHRNGVRRTSYKGVVVIPWNGH
WAFIVSKSWQPPQGVQLEGPLCC*
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spliced messenger RNA

>Ggra9210.t1 ID=Ggra9210.t1|Name=Ggra9210.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1272bp|location=Sequence derived from alignment at tig00000075_pilon:393900..395171+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTGCGCCGATGGTGAATGCCAGTCGCTTCGCCCGTCGTCGCCAAT
CTCTCCGAGTCGCATCGTGCGACGCGGCTTAGTGTGGCTATCTCGCTTTC
TTCTGGTCGCCGTCTTCTTCCTGTCCAAGGCCAAGCTGGTGACCATCGAG
CCTCCCTTCACATCCACATCCACATCGTCGCTACTTCATCAGAGCACCGC
TGTACTGCTCATAACTCATTCACGACCGCATTATCTCAATCGATCATTAA
CTTCACTACTGCGATATCATCCAAACACGCAAGAATTTCCGGTCGTTGTT
TCAAAGGACCAGCAGGATGGCGAGCATGCTCACATTGACAGCCTTTTGGA
GCACTTTGCTCACCGAGCTGAGCGTCAGGGAGTGCCGTTTTATACGTGGG
CACATGCAAAATGTTACGCGGAACAGCCCGATGAAGAGCCAGCCTTCGTC
GATGCAGCCGCATACCGTAGAATAACGCGCCATTACTACTGGGCGCTGTC
CACGCTCTTCTCTACCCCACTGGCAGCTCACCAGATTGACCGCGTCATAA
TTCTCGAGGATGACATGGAAATCGCGTCGGATACGTTGGAGTACTTCAAG
GCTTTCACCCCAATGCTAGAGTCTGATCCCTCATTGTTTTGTATCTCCGC
CTGGAATGACAATGGCATTCAAACATTAAATCTAAACAACTCTCAATTTC
ATCGCACCGATTTCTTCCCTGGTCTCGGATGGATGCTCACACGCGCTATC
TGGCATGAACTGCAACCAAAATGGCCGTCCATATACTGGGATGATTGGGT
GCGGCATCCAGAACAAACAAAACACCGCCATTGTATACGTCCCGAAGTGA
GCAGAACCGCAAACTTTGGTGAAAAGGGAGTTTCACAATCATTTCACTTT
CAAAAACATGTCTCACAGGTGCTGTTGTCGCAACAAGCTGTGGATTTTTC
AAGTCTTAATCTTTCGTACTTGCATGCTGATCAGTATGACCAGCTTATAT
TTGGGCGCATGAGAAAGGCTGTGCAACTTCGATTTTCAAATTACCTCACC
AGCAGACCTCAGGATTCCGATGTGATTGCTTTTTACCCGGATGATAACAT
GGAAGCTATTAGTCGACGTACGGGTATAATGGGCGATCATCGAAACGGGG
TGCGACGCACTAGTTACAAGGGCGTTGTCGTGATTCCGTGGAACGGACAC
TGGGCTTTCATTGTCAGCAAGAGCTGGCAGCCACCACAAGGGGTTCAGCT
TGAGGGTCCACTTTGTTGTTAA
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protein sequence of Ggra9210.t1

>Ggra9210.t1 ID=Ggra9210.t1|Name=Ggra9210.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=424bp
MTCADGECQSLRPSSPISPSRIVRRGLVWLSRFLLVAVFFLSKAKLVTIE
PPFTSTSTSSLLHQSTAVLLITHSRPHYLNRSLTSLLRYHPNTQEFPVVV
SKDQQDGEHAHIDSLLEHFAHRAERQGVPFYTWAHAKCYAEQPDEEPAFV
DAAAYRRITRHYYWALSTLFSTPLAAHQIDRVIILEDDMEIASDTLEYFK
AFTPMLESDPSLFCISAWNDNGIQTLNLNNSQFHRTDFFPGLGWMLTRAI
WHELQPKWPSIYWDDWVRHPEQTKHRHCIRPEVSRTANFGEKGVSQSFHF
QKHVSQVLLSQQAVDFSSLNLSYLHADQYDQLIFGRMRKAVQLRFSNYLT
SRPQDSDVIAFYPDDNMEAISRRTGIMGDHRNGVRRTSYKGVVVIPWNGH
WAFIVSKSWQPPQGVQLEGPLCC*
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mRNA from alignment at tig00000075_pilon:393900..395171+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9210.t1 ID=Ggra9210.t1|Name=Ggra9210.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1272bp|location=Sequence derived from alignment at tig00000075_pilon:393900..395171+ (Gracilaria gracilis GNS1m male)
ATGACGTGCGCCGATGGTGAATGCCAGTCGCTTCGCCCGTCGTCGCCAAT
CTCTCCGAGTCGCATCGTGCGACGCGGCTTAGTGTGGCTATCTCGCTTTC
TTCTGGTCGCCGTCTTCTTCCTGTCCAAGGCCAAGCTGGTGACCATCGAG
CCTCCCTTCACATCCACATCCACATCGTCGCTACTTCATCAGAGCACCGC
TGTACTGCTCATAACTCATTCACGACCGCATTATCTCAATCGATCATTAA
CTTCACTACTGCGATATCATCCAAACACGCAAGAATTTCCGGTCGTTGTT
TCAAAGGACCAGCAGGATGGCGAGCATGCTCACATTGACAGCCTTTTGGA
GCACTTTGCTCACCGAGCTGAGCGTCAGGGAGTGCCGTTTTATACGTGGG
CACATGCAAAATGTTACGCGGAACAGCCCGATGAAGAGCCAGCCTTCGTC
GATGCAGCCGCATACCGTAGAATAACGCGCCATTACTACTGGGCGCTGTC
CACGCTCTTCTCTACCCCACTGGCAGCTCACCAGATTGACCGCGTCATAA
TTCTCGAGGATGACATGGAAATCGCGTCGGATACGTTGGAGTACTTCAAG
GCTTTCACCCCAATGCTAGAGTCTGATCCCTCATTGTTTTGTATCTCCGC
CTGGAATGACAATGGCATTCAAACATTAAATCTAAACAACTCTCAATTTC
ATCGCACCGATTTCTTCCCTGGTCTCGGATGGATGCTCACACGCGCTATC
TGGCATGAACTGCAACCAAAATGGCCGTCCATATACTGGGATGATTGGGT
GCGGCATCCAGAACAAACAAAACACCGCCATTGTATACGTCCCGAAGTGA
GCAGAACCGCAAACTTTGGTGAAAAGGGAGTTTCACAATCATTTCACTTT
CAAAAACATGTCTCACAGGTGCTGTTGTCGCAACAAGCTGTGGATTTTTC
AAGTCTTAATCTTTCGTACTTGCATGCTGATCAGTATGACCAGCTTATAT
TTGGGCGCATGAGAAAGGCTGTGCAACTTCGATTTTCAAATTACCTCACC
AGCAGACCTCAGGATTCCGATGTGATTGCTTTTTACCCGGATGATAACAT
GGAAGCTATTAGTCGACGTACGGGTATAATGGGCGATCATCGAAACGGGG
TGCGACGCACTAGTTACAAGGGCGTTGTCGTGATTCCGTGGAACGGACAC
TGGGCTTTCATTGTCAGCAAGAGCTGGCAGCCACCACAAGGGGTTCAGCT
TGAGGGTCCACTTTGTTGTTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:393900..395171+

>Ggra9210.t1 ID=Ggra9210.t1|Name=Ggra9210.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1272bp|location=Sequence derived from alignment at tig00000075_pilon:393900..395171+ (Gracilaria gracilis GNS1m male)
ATGACGTGCGCCGATGGTGAATGCCAGTCGCTTCGCCCGTCGTCGCCAAT
CTCTCCGAGTCGCATCGTGCGACGCGGCTTAGTGTGGCTATCTCGCTTTC
TTCTGGTCGCCGTCTTCTTCCTGTCCAAGGCCAAGCTGGTGACCATCGAG
CCTCCCTTCACATCCACATCCACATCGTCGCTACTTCATCAGAGCACCGC
TGTACTGCTCATAACTCATTCACGACCGCATTATCTCAATCGATCATTAA
CTTCACTACTGCGATATCATCCAAACACGCAAGAATTTCCGGTCGTTGTT
TCAAAGGACCAGCAGGATGGCGAGCATGCTCACATTGACAGCCTTTTGGA
GCACTTTGCTCACCGAGCTGAGCGTCAGGGAGTGCCGTTTTATACGTGGG
CACATGCAAAATGTTACGCGGAACAGCCCGATGAAGAGCCAGCCTTCGTC
GATGCAGCCGCATACCGTAGAATAACGCGCCATTACTACTGGGCGCTGTC
CACGCTCTTCTCTACCCCACTGGCAGCTCACCAGATTGACCGCGTCATAA
TTCTCGAGGATGACATGGAAATCGCGTCGGATACGTTGGAGTACTTCAAG
GCTTTCACCCCAATGCTAGAGTCTGATCCCTCATTGTTTTGTATCTCCGC
CTGGAATGACAATGGCATTCAAACATTAAATCTAAACAACTCTCAATTTC
ATCGCACCGATTTCTTCCCTGGTCTCGGATGGATGCTCACACGCGCTATC
TGGCATGAACTGCAACCAAAATGGCCGTCCATATACTGGGATGATTGGGT
GCGGCATCCAGAACAAACAAAACACCGCCATTGTATACGTCCCGAAGTGA
GCAGAACCGCAAACTTTGGTGAAAAGGGAGTTTCACAATCATTTCACTTT
CAAAAACATGTCTCACAGGTGCTGTTGTCGCAACAAGCTGTGGATTTTTC
AAGTCTTAATCTTTCGTACTTGCATGCTGATCAGTATGACCAGCTTATAT
TTGGGCGCATGAGAAAGGCTGTGCAACTTCGATTTTCAAATTACCTCACC
AGCAGACCTCAGGATTCCGATGTGATTGCTTTTTACCCGGATGATAACAT
GGAAGCTATTAGTCGACGTACGGGTATAATGGGCGATCATCGAAACGGGG
TGCGACGCACTAGTTACAAGGGCGTTGTCGTGATTCCGTGGAACGGACAC
TGGGCTTTCATTGTCAGCAAGAGCTGGCAGCCACCACAAGGGGTTCAGCT
TGAGGGTCCACTTTGTTGTTAA
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