Ggra921.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra921.t1
Unique NameGgra921.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:517200..518342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000014680
Max annot lvl121069|Pythiales
Evalue5.89e-06
EggNOG OGs2E3H1@1|root,2SAJC@2759|Eukaryota,1ME2R@121069|Pythiales
Descriptionfunction. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra921Ggra921Gracilaria gracilis GNS1m malegenetig00000049_pilon 517200..518342 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra921.t1.start1Ggra921.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 517200..517202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra921.t1.CDS1Ggra921.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 517200..518342 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra921.t1.exon1Ggra921.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 517200..518342 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra921.t1.stop1Ggra921.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 518340..518342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra921.t1Ggra921.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 517200..518342 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra921.t1 ID=Ggra921.t1|Name=Ggra921.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=381bp
MVRVSLVLPLLLAAALHCASAHQSIAYPWAMSRMNACRVGKFKDCPGPCP
NDEIRRDQSPNLPSITVSRNAFVTLNTKRNNHAGGFSRWSIVNVRDMNDA
SAHDNNAFLWTCADLNKQKCDALNYKRDCSFDGRGQFYQHDIQIPPVYPD
GVYVMGWAWYGGTQGHGRGGDFGDYYDCMYINVQGGSLEESHRPKFETGP
SGTARDGKCAARTNRLGDCVSEPCRGRNAGMKVPREFDGNRQPPLLQSRR
FAPHQIERPPATAPTVYGITIRRANEPDEVLASSSQGAIAQLRLTGQSVT
ITCDAEGAIDKVEFYKHGEELLETDSTAPYSVNGEFRSGNGYRYRPWRYQ
REDDIYLLSCAVYGTDGSVQWARLEVWQTK*
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spliced messenger RNA

>Ggra921.t1 ID=Ggra921.t1|Name=Ggra921.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000049_pilon:517200..518342+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCGAGTCTCGCTCGtgctgccgctgctgctggccgccgcgctgcA
CTGCGCGTCGGCGCATCAATCCATCGCGTACCCGTGGGCCATGTCGCGCA
TGAACGCGTGCCGTGTGGGCAAGTTCAAGGACTGTCCGGGGCCGTGTCCC
AACGACGAGATCCGTCGCGACCAATCGCCCAACCTGCCGTCCATCACCGT
GTCGCGCAACGCCTTTGTGACGCTCAACACCAAGCGCAACAACCACGCGG
GCGGCTTTTCACGCTGGTCCATCGTCAACGTGCGCGACATGAACGACGCC
TCCGCGCACGACAACAACGCCTTTCTGTGGACGTGCGCCGACCTCAACAA
ACAAAAGTGCGACGCGCTCAACTACAAGCGCGACTGCAGCTTTGACGGCC
GCGGCCAGTTCTACCAGCACGACATCCAGATCCCGCCCGTGTACCCCGAC
GGCGTGTACGTCATGGGCTGGGCGTGGTACGGCGGCACGCAGGGCCACGG
TCGCGGCGGCGACTTTGGCGACTACTACGACTGCATGTACATCAACGTGC
AAGGCGGCTCGCTGGAGGAGTCGCACCGCCCCAAGTTCGAGACGGGCCCG
TCCGGCACCGCGCGCGACGGCAAGTGCGCCGCGCGTACCAACCGTCTGGG
CGACTGCGTGAGCGAGCCGTGTCGCGGCCGCAACGCCGGCATGAAGGTGC
CGCGCGAGTTTGACGGCAACCGACAGCCGCCGTTGCTGCAGAGCCGTCGC
TTTGCGCCGCATCAGATCGAGCGGCCGCCGGCCACCGCGCCCACGGTGTA
CGGCATCACCATCCGGCGCGCCAACGAGCCGGACGAGGTGCTGGCGTCGT
CGTCGCAGGGCGCCATTGCGCAGCTGCGCCTCACGGGGCAGTCGGTGACC
ATCACGTGCGACGCGGAGGGCGCCATCGACAAGGTGGAGTTCTACAAGCA
TGGCGAGGAGCTGCTGGAGACGGATAGCACCGCGCCGTACAGCGTGAACG
GCGAGTTCCGCTCCGGCAACGGCTACCGCTACAGGCCGTGGCGCTATCAG
CGCGAGGATGACATCTACTTGCTGTCGTGCGCGGTGTACGGCACGGACGG
TAGCGTGCAGTGGGCGCGTCTCGAAGTGTGGCAGACCAAGTAA
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protein sequence of Ggra921.t1

>Ggra921.t1 ID=Ggra921.t1|Name=Ggra921.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=381bp
MVRVSLVLPLLLAAALHCASAHQSIAYPWAMSRMNACRVGKFKDCPGPCP
NDEIRRDQSPNLPSITVSRNAFVTLNTKRNNHAGGFSRWSIVNVRDMNDA
SAHDNNAFLWTCADLNKQKCDALNYKRDCSFDGRGQFYQHDIQIPPVYPD
GVYVMGWAWYGGTQGHGRGGDFGDYYDCMYINVQGGSLEESHRPKFETGP
SGTARDGKCAARTNRLGDCVSEPCRGRNAGMKVPREFDGNRQPPLLQSRR
FAPHQIERPPATAPTVYGITIRRANEPDEVLASSSQGAIAQLRLTGQSVT
ITCDAEGAIDKVEFYKHGEELLETDSTAPYSVNGEFRSGNGYRYRPWRYQ
REDDIYLLSCAVYGTDGSVQWARLEVWQTK*
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mRNA from alignment at tig00000049_pilon:517200..518342+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra921.t1 ID=Ggra921.t1|Name=Ggra921.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000049_pilon:517200..518342+ (Gracilaria gracilis GNS1m male)
ATGGTCCGAGTCTCGCTCGtgctgccgctgctgctggccgccgcgctgcA
CTGCGCGTCGGCGCATCAATCCATCGCGTACCCGTGGGCCATGTCGCGCA
TGAACGCGTGCCGTGTGGGCAAGTTCAAGGACTGTCCGGGGCCGTGTCCC
AACGACGAGATCCGTCGCGACCAATCGCCCAACCTGCCGTCCATCACCGT
GTCGCGCAACGCCTTTGTGACGCTCAACACCAAGCGCAACAACCACGCGG
GCGGCTTTTCACGCTGGTCCATCGTCAACGTGCGCGACATGAACGACGCC
TCCGCGCACGACAACAACGCCTTTCTGTGGACGTGCGCCGACCTCAACAA
ACAAAAGTGCGACGCGCTCAACTACAAGCGCGACTGCAGCTTTGACGGCC
GCGGCCAGTTCTACCAGCACGACATCCAGATCCCGCCCGTGTACCCCGAC
GGCGTGTACGTCATGGGCTGGGCGTGGTACGGCGGCACGCAGGGCCACGG
TCGCGGCGGCGACTTTGGCGACTACTACGACTGCATGTACATCAACGTGC
AAGGCGGCTCGCTGGAGGAGTCGCACCGCCCCAAGTTCGAGACGGGCCCG
TCCGGCACCGCGCGCGACGGCAAGTGCGCCGCGCGTACCAACCGTCTGGG
CGACTGCGTGAGCGAGCCGTGTCGCGGCCGCAACGCCGGCATGAAGGTGC
CGCGCGAGTTTGACGGCAACCGACAGCCGCCGTTGCTGCAGAGCCGTCGC
TTTGCGCCGCATCAGATCGAGCGGCCGCCGGCCACCGCGCCCACGGTGTA
CGGCATCACCATCCGGCGCGCCAACGAGCCGGACGAGGTGCTGGCGTCGT
CGTCGCAGGGCGCCATTGCGCAGCTGCGCCTCACGGGGCAGTCGGTGACC
ATCACGTGCGACGCGGAGGGCGCCATCGACAAGGTGGAGTTCTACAAGCA
TGGCGAGGAGCTGCTGGAGACGGATAGCACCGCGCCGTACAGCGTGAACG
GCGAGTTCCGCTCCGGCAACGGCTACCGCTACAGGCCGTGGCGCTATCAG
CGCGAGGATGACATCTACTTGCTGTCGTGCGCGGTGTACGGCACGGACGG
TAGCGTGCAGTGGGCGCGTCTCGAAGTGTGGCAGACCAAGTAA
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Coding sequence (CDS) from alignment at tig00000049_pilon:517200..518342+

>Ggra921.t1 ID=Ggra921.t1|Name=Ggra921.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1143bp|location=Sequence derived from alignment at tig00000049_pilon:517200..518342+ (Gracilaria gracilis GNS1m male)
ATGGTCCGAGTCTCGCTCGtgctgccgctgctgctggccgccgcgctgcA
CTGCGCGTCGGCGCATCAATCCATCGCGTACCCGTGGGCCATGTCGCGCA
TGAACGCGTGCCGTGTGGGCAAGTTCAAGGACTGTCCGGGGCCGTGTCCC
AACGACGAGATCCGTCGCGACCAATCGCCCAACCTGCCGTCCATCACCGT
GTCGCGCAACGCCTTTGTGACGCTCAACACCAAGCGCAACAACCACGCGG
GCGGCTTTTCACGCTGGTCCATCGTCAACGTGCGCGACATGAACGACGCC
TCCGCGCACGACAACAACGCCTTTCTGTGGACGTGCGCCGACCTCAACAA
ACAAAAGTGCGACGCGCTCAACTACAAGCGCGACTGCAGCTTTGACGGCC
GCGGCCAGTTCTACCAGCACGACATCCAGATCCCGCCCGTGTACCCCGAC
GGCGTGTACGTCATGGGCTGGGCGTGGTACGGCGGCACGCAGGGCCACGG
TCGCGGCGGCGACTTTGGCGACTACTACGACTGCATGTACATCAACGTGC
AAGGCGGCTCGCTGGAGGAGTCGCACCGCCCCAAGTTCGAGACGGGCCCG
TCCGGCACCGCGCGCGACGGCAAGTGCGCCGCGCGTACCAACCGTCTGGG
CGACTGCGTGAGCGAGCCGTGTCGCGGCCGCAACGCCGGCATGAAGGTGC
CGCGCGAGTTTGACGGCAACCGACAGCCGCCGTTGCTGCAGAGCCGTCGC
TTTGCGCCGCATCAGATCGAGCGGCCGCCGGCCACCGCGCCCACGGTGTA
CGGCATCACCATCCGGCGCGCCAACGAGCCGGACGAGGTGCTGGCGTCGT
CGTCGCAGGGCGCCATTGCGCAGCTGCGCCTCACGGGGCAGTCGGTGACC
ATCACGTGCGACGCGGAGGGCGCCATCGACAAGGTGGAGTTCTACAAGCA
TGGCGAGGAGCTGCTGGAGACGGATAGCACCGCGCCGTACAGCGTGAACG
GCGAGTTCCGCTCCGGCAACGGCTACCGCTACAGGCCGTGGCGCTATCAG
CGCGAGGATGACATCTACTTGCTGTCGTGCGCGGTGTACGGCACGGACGG
TAGCGTGCAGTGGGCGCGTCTCGAAGTGTGGCAGACCAAGTAA
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