Ggra9209.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9209.t1
Unique Name	Ggra9209.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	632

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:391540..393435 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	391596.PBAL39_20510
Max annot lvl	976\|Bacteroidetes
Evalue	9.31e-66
EggNOG OGs	COG3408@1\|root,COG3408@2\|Bacteria,4NFMY@976\|Bacteroidetes
Description	Glycogen debranching enzyme
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9209	Ggra9209	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 391540..393435 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9209.t1.stop1	Ggra9209.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 391540..391542 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9209.t1.CDS1	Ggra9209.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 391540..393435 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9209.t1.exon1	Ggra9209.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 391540..393435 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9209.t1.start1	Ggra9209.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 393433..393435 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9209.t1	Ggra9209.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 391540..393435 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:391540..393435-
coding sequence from alignment at tig00000075_pilon:391540..393435-

mRNA sequence

>Ggra9209.t1 ID=Ggra9209.t1|Name=Ggra9209.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=632bp
MVNWTPDVAAKSLALSQSAPSASSPTSPTSPSTIEICGLHAAAVITLSAA
GLRSVQAIFPTRFAHPGHPRGYLQTALHFDVVLTPTHIRYDGVSLSLIDD
AATVTQRLFVSPSEPAVYCLFDYTLAQVASEQLRKPNLTSVCQHNGHTIF
RHDVWVSFSRLLINYSCTKSQPFSVPFADLLLRKRLVDDWTASASLQCPD
SNICLLNHFSKIRVQECVFKASKLGLVHSPAGGMFYCGVWCNDQAEYAAP
ALAYLGGPGSRARQSALNSVLVLSEYFQYESGSVPYSVEIDGGYVGRLDR
GDAAMYAWGTSLLVLNLADQRYTDKLFPSISFACGLLYDKLINSSNGVIP
SQSDELEGRFPSGSYNLSTNCLAILAFEAASQVAIEANDPSLRDEYRSAA
RLLRINTHEHFKCDDERMYTYYKHCQDARGWACLTALAELAQGEKALEYC
LNQLWVDDGVLTSSAHSVVWDRTTLYAIRAAFRVGLVELATKRLQQYAKR
RLCETPASPFAVENNESWAQLSAESALFVRVLVEGLLGIDMLSERRLLLR
PRCPRAWPGYTIENVFLADVRVTFRVQLVDGEMSVQVESADGGCQTQVDD
GYLLLRLPPPPSSPEFTHITSQQYTTIRRSS*

spliced messenger RNA

>Ggra9209.t1 ID=Ggra9209.t1|Name=Ggra9209.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1896bp|location=Sequence derived from alignment at tig00000075_pilon:391540..393435- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAATTGGACGCCCGACGTCGCCGCAAAGTCGCTGGCGCTGTCGCA
GTCCGCCCCTTCCGCCTCATCGCCCACATCGCCCACATCGCCCTCTACTA
TCGAGATTTGCGGTCTTCATGCCGCCGCAGTCATCACACTTTCTGCCGCT
GGACTACGCTCGGTGCAGGCCATTTTCCCGACTCGATTCGCCCACCCCGG
CCATCCAAGGGGCTATTTGCAAACCGCCCTTCATTTCGATGTCGTGCTAA
CTCCCACTCACATCAGATACGATGGCGTTTCTCTATCTCTCATTGATGAT
GCTGCCACCGTCACTCAACGTCTGTTCGTATCGCCTTCAGAGCCGGCTGT
CTACTGCCTGTTTGACTACACGCTTGCTCAGGTTGCGTCTGAACAGCTGA
GGAAACCGAACCTTACCTCCGTTTGTCAACACAATGGACACACCATTTTC
AGACATGATGTTTGGGTGTCGTTCTCGCGTCTGCTCATCAATTATAGCTG
TACCAAATCTCAACCGTTTTCCGTGCCGTTTGCAGACCTCTTACTTCGGA
AACGTCTGGTTGATGATTGGACCGCGTCCGCTTCTCTTCAATGTCCAGAC
AGTAACATCTGCCTACTCAACCACTTTTCCAAAATCAGGGTGCAGGAATG
CGTGTTCAAGGCGTCCAAGTTGGGGCTTGTTCACTCGCCAGCTGGTGGCA
TGTTTTATTGTGGAGTTTGGTGTAACGACCAAGCTGAGTACGCTGCGCCC
GCTCTGGCGTATTTGGGCGGCCCTGGCTCCCGCGCGAGGCAGTCTGCCCT
CAATTCTGTTCTTGTGCTGTCTGAATACTTTCAGTATGAGTCCGGAAGTG
TTCCTTACAGCGTTGAGATTGATGGTGGGTATGTTGGACGCCTAGATCGT
GGTGATGCTGCCATGTATGCCTGGGGAACCTCGTTATTGGTTCTTAACCT
TGCGGACCAGAGGTACACGGACAAGTTGTTCCCTAGCATTAGCTTTGCCT
GCGGTTTGTTGTATGACAAGTTGATTAACTCTTCAAATGGCGTAATTCCA
TCTCAGAGTGATGAGTTAGAAGGGCGCTTTCCATCGGGTTCATATAATTT
GTCGACCAATTGTCTAGCCATATTGGCTTTTGAAGCAGCTTCGCAGGTGG
CTATTGAAGCAAATGATCCCTCTTTGAGAGATGAATATCGATCAGCTGCA
CGTTTGTTGCGTATCAATACTCATGAACATTTCAAATGCGACGATGAAAG
AATGTATACTTATTATAAACATTGCCAGGATGCGAGAGGATGGGCATGTC
TCACAGCCTTAGCAGAGCTTGCGCAGGGTGAAAAAGCTCTTGAATACTGC
CTCAACCAACTGTGGGTTGATGATGGTGTACTCACTTCTAGTGCTCACAG
TGTTGTCTGGGATCGTACAACATTATACGCTATACGAGCTGCATTTCGAG
TCGGCCTTGTTGAACTTGCTACCAAACGGCTCCAACAATACGCCAAACGA
CGCCTTTGTGAGACACCTGCTTCTCCTTTTGCCGTGGAGAACAATGAGAG
TTGGGCACAATTGTCGGCCGAAAGTGCCTTGTTTGTTCGCGTCCTTGTTG
AAGGTTTGCTTGGTATTGACATGTTAAGTGAACGACGTTTACTCTTGAGA
CCGAGATGTCCGCGAGCATGGCCAGGTTATACGATTGAAAATGTGTTTCT
TGCGGATGTGCGTGTCACATTTCGCGTTCAACTTGTTGATGGGGAAATGT
CTGTTCAGGTGGAGTCTGCAGATGGAGGTTGTCAAACGCAGGTGGATGAT
GGCTACTTGTTACTTCGCCTTCCCCCTCCTCCTTCCAGTCCAGAGTTTAC
TCATATTACAAGCCAGCAGTATACGACTATACGTCGTTCTTCATGA

protein sequence of Ggra9209.t1

>Ggra9209.t1 ID=Ggra9209.t1|Name=Ggra9209.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=632bp
MVNWTPDVAAKSLALSQSAPSASSPTSPTSPSTIEICGLHAAAVITLSAA
GLRSVQAIFPTRFAHPGHPRGYLQTALHFDVVLTPTHIRYDGVSLSLIDD
AATVTQRLFVSPSEPAVYCLFDYTLAQVASEQLRKPNLTSVCQHNGHTIF
RHDVWVSFSRLLINYSCTKSQPFSVPFADLLLRKRLVDDWTASASLQCPD
SNICLLNHFSKIRVQECVFKASKLGLVHSPAGGMFYCGVWCNDQAEYAAP
ALAYLGGPGSRARQSALNSVLVLSEYFQYESGSVPYSVEIDGGYVGRLDR
GDAAMYAWGTSLLVLNLADQRYTDKLFPSISFACGLLYDKLINSSNGVIP
SQSDELEGRFPSGSYNLSTNCLAILAFEAASQVAIEANDPSLRDEYRSAA
RLLRINTHEHFKCDDERMYTYYKHCQDARGWACLTALAELAQGEKALEYC
LNQLWVDDGVLTSSAHSVVWDRTTLYAIRAAFRVGLVELATKRLQQYAKR
RLCETPASPFAVENNESWAQLSAESALFVRVLVEGLLGIDMLSERRLLLR
PRCPRAWPGYTIENVFLADVRVTFRVQLVDGEMSVQVESADGGCQTQVDD
GYLLLRLPPPPSSPEFTHITSQQYTTIRRSS*

mRNA from alignment at tig00000075_pilon:391540..393435-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9209.t1 ID=Ggra9209.t1|Name=Ggra9209.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1896bp|location=Sequence derived from alignment at tig00000075_pilon:391540..393435- (Gracilaria gracilis GNS1m male)
ATGGTCAATTGGACGCCCGACGTCGCCGCAAAGTCGCTGGCGCTGTCGCA
GTCCGCCCCTTCCGCCTCATCGCCCACATCGCCCACATCGCCCTCTACTA
TCGAGATTTGCGGTCTTCATGCCGCCGCAGTCATCACACTTTCTGCCGCT
GGACTACGCTCGGTGCAGGCCATTTTCCCGACTCGATTCGCCCACCCCGG
CCATCCAAGGGGCTATTTGCAAACCGCCCTTCATTTCGATGTCGTGCTAA
CTCCCACTCACATCAGATACGATGGCGTTTCTCTATCTCTCATTGATGAT
GCTGCCACCGTCACTCAACGTCTGTTCGTATCGCCTTCAGAGCCGGCTGT
CTACTGCCTGTTTGACTACACGCTTGCTCAGGTTGCGTCTGAACAGCTGA
GGAAACCGAACCTTACCTCCGTTTGTCAACACAATGGACACACCATTTTC
AGACATGATGTTTGGGTGTCGTTCTCGCGTCTGCTCATCAATTATAGCTG
TACCAAATCTCAACCGTTTTCCGTGCCGTTTGCAGACCTCTTACTTCGGA
AACGTCTGGTTGATGATTGGACCGCGTCCGCTTCTCTTCAATGTCCAGAC
AGTAACATCTGCCTACTCAACCACTTTTCCAAAATCAGGGTGCAGGAATG
CGTGTTCAAGGCGTCCAAGTTGGGGCTTGTTCACTCGCCAGCTGGTGGCA
TGTTTTATTGTGGAGTTTGGTGTAACGACCAAGCTGAGTACGCTGCGCCC
GCTCTGGCGTATTTGGGCGGCCCTGGCTCCCGCGCGAGGCAGTCTGCCCT
CAATTCTGTTCTTGTGCTGTCTGAATACTTTCAGTATGAGTCCGGAAGTG
TTCCTTACAGCGTTGAGATTGATGGTGGGTATGTTGGACGCCTAGATCGT
GGTGATGCTGCCATGTATGCCTGGGGAACCTCGTTATTGGTTCTTAACCT
TGCGGACCAGAGGTACACGGACAAGTTGTTCCCTAGCATTAGCTTTGCCT
GCGGTTTGTTGTATGACAAGTTGATTAACTCTTCAAATGGCGTAATTCCA
TCTCAGAGTGATGAGTTAGAAGGGCGCTTTCCATCGGGTTCATATAATTT
GTCGACCAATTGTCTAGCCATATTGGCTTTTGAAGCAGCTTCGCAGGTGG
CTATTGAAGCAAATGATCCCTCTTTGAGAGATGAATATCGATCAGCTGCA
CGTTTGTTGCGTATCAATACTCATGAACATTTCAAATGCGACGATGAAAG
AATGTATACTTATTATAAACATTGCCAGGATGCGAGAGGATGGGCATGTC
TCACAGCCTTAGCAGAGCTTGCGCAGGGTGAAAAAGCTCTTGAATACTGC
CTCAACCAACTGTGGGTTGATGATGGTGTACTCACTTCTAGTGCTCACAG
TGTTGTCTGGGATCGTACAACATTATACGCTATACGAGCTGCATTTCGAG
TCGGCCTTGTTGAACTTGCTACCAAACGGCTCCAACAATACGCCAAACGA
CGCCTTTGTGAGACACCTGCTTCTCCTTTTGCCGTGGAGAACAATGAGAG
TTGGGCACAATTGTCGGCCGAAAGTGCCTTGTTTGTTCGCGTCCTTGTTG
AAGGTTTGCTTGGTATTGACATGTTAAGTGAACGACGTTTACTCTTGAGA
CCGAGATGTCCGCGAGCATGGCCAGGTTATACGATTGAAAATGTGTTTCT
TGCGGATGTGCGTGTCACATTTCGCGTTCAACTTGTTGATGGGGAAATGT
CTGTTCAGGTGGAGTCTGCAGATGGAGGTTGTCAAACGCAGGTGGATGAT
GGCTACTTGTTACTTCGCCTTCCCCCTCCTCCTTCCAGTCCAGAGTTTAC
TCATATTACAAGCCAGCAGTATACGACTATACGTCGTTCTTCATGA

Coding sequence (CDS) from alignment at tig00000075_pilon:391540..393435-

>Ggra9209.t1 ID=Ggra9209.t1|Name=Ggra9209.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1896bp|location=Sequence derived from alignment at tig00000075_pilon:391540..393435- (Gracilaria gracilis GNS1m male)
ATGGTCAATTGGACGCCCGACGTCGCCGCAAAGTCGCTGGCGCTGTCGCA
GTCCGCCCCTTCCGCCTCATCGCCCACATCGCCCACATCGCCCTCTACTA
TCGAGATTTGCGGTCTTCATGCCGCCGCAGTCATCACACTTTCTGCCGCT
GGACTACGCTCGGTGCAGGCCATTTTCCCGACTCGATTCGCCCACCCCGG
CCATCCAAGGGGCTATTTGCAAACCGCCCTTCATTTCGATGTCGTGCTAA
CTCCCACTCACATCAGATACGATGGCGTTTCTCTATCTCTCATTGATGAT
GCTGCCACCGTCACTCAACGTCTGTTCGTATCGCCTTCAGAGCCGGCTGT
CTACTGCCTGTTTGACTACACGCTTGCTCAGGTTGCGTCTGAACAGCTGA
GGAAACCGAACCTTACCTCCGTTTGTCAACACAATGGACACACCATTTTC
AGACATGATGTTTGGGTGTCGTTCTCGCGTCTGCTCATCAATTATAGCTG
TACCAAATCTCAACCGTTTTCCGTGCCGTTTGCAGACCTCTTACTTCGGA
AACGTCTGGTTGATGATTGGACCGCGTCCGCTTCTCTTCAATGTCCAGAC
AGTAACATCTGCCTACTCAACCACTTTTCCAAAATCAGGGTGCAGGAATG
CGTGTTCAAGGCGTCCAAGTTGGGGCTTGTTCACTCGCCAGCTGGTGGCA
TGTTTTATTGTGGAGTTTGGTGTAACGACCAAGCTGAGTACGCTGCGCCC
GCTCTGGCGTATTTGGGCGGCCCTGGCTCCCGCGCGAGGCAGTCTGCCCT
CAATTCTGTTCTTGTGCTGTCTGAATACTTTCAGTATGAGTCCGGAAGTG
TTCCTTACAGCGTTGAGATTGATGGTGGGTATGTTGGACGCCTAGATCGT
GGTGATGCTGCCATGTATGCCTGGGGAACCTCGTTATTGGTTCTTAACCT
TGCGGACCAGAGGTACACGGACAAGTTGTTCCCTAGCATTAGCTTTGCCT
GCGGTTTGTTGTATGACAAGTTGATTAACTCTTCAAATGGCGTAATTCCA
TCTCAGAGTGATGAGTTAGAAGGGCGCTTTCCATCGGGTTCATATAATTT
GTCGACCAATTGTCTAGCCATATTGGCTTTTGAAGCAGCTTCGCAGGTGG
CTATTGAAGCAAATGATCCCTCTTTGAGAGATGAATATCGATCAGCTGCA
CGTTTGTTGCGTATCAATACTCATGAACATTTCAAATGCGACGATGAAAG
AATGTATACTTATTATAAACATTGCCAGGATGCGAGAGGATGGGCATGTC
TCACAGCCTTAGCAGAGCTTGCGCAGGGTGAAAAAGCTCTTGAATACTGC
CTCAACCAACTGTGGGTTGATGATGGTGTACTCACTTCTAGTGCTCACAG
TGTTGTCTGGGATCGTACAACATTATACGCTATACGAGCTGCATTTCGAG
TCGGCCTTGTTGAACTTGCTACCAAACGGCTCCAACAATACGCCAAACGA
CGCCTTTGTGAGACACCTGCTTCTCCTTTTGCCGTGGAGAACAATGAGAG
TTGGGCACAATTGTCGGCCGAAAGTGCCTTGTTTGTTCGCGTCCTTGTTG
AAGGTTTGCTTGGTATTGACATGTTAAGTGAACGACGTTTACTCTTGAGA
CCGAGATGTCCGCGAGCATGGCCAGGTTATACGATTGAAAATGTGTTTCT
TGCGGATGTGCGTGTCACATTTCGCGTTCAACTTGTTGATGGGGAAATGT
CTGTTCAGGTGGAGTCTGCAGATGGAGGTTGTCAAACGCAGGTGGATGAT
GGCTACTTGTTACTTCGCCTTCCCCCTCCTCCTTCCAGTCCAGAGTTTAC
TCATATTACAAGCCAGCAGTATACGACTATACGTCGTTCTTCATGA