Ggra9208.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9208.t1
Unique NameGgra9208.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length447
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:389454..390794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX35825
PFAMsLRR_4,LRR_5,LRR_8
Max annot lvl2759|Eukaryota
Evalue0.000149
EggNOG OGsCOG4886@1|root,KOG0531@2759|Eukaryota
Descriptionaxoneme assembly
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9208Ggra9208Gracilaria gracilis GNS1m malegenetig00000075_pilon 389454..390794 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9208.t1.stop1Ggra9208.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 389454..389456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9208.t1.CDS1Ggra9208.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 389454..390794 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9208.t1.exon1Ggra9208.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 389454..390794 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9208.t1.start1Ggra9208.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 390792..390794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9208.t1Ggra9208.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 389454..390794 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9208.t1 ID=Ggra9208.t1|Name=Ggra9208.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=447bp
MKLSNAITESGNDSEDEDQRNVLTAAKASEFCPKHYRLIAPRNALTHLDD
ISALSSLDYVDLTGNKLTSLSGLRNNHKIKTLIVRDNNLSDLTPVLKLSA
LRVLNIARNKFVSTDWLVHASFAGALLTLVANGNQIKELEGLSCLGAVKT
LVLSHNRIENMTPVTALSSLTKLSLSSNEIRVIPDSIKRLRSLSELRLAH
NLISSLPTKQVLSSLACLKIVDLGHNRISSFEALAFIGNSIVNLNVRSNP
ATSEQDFTENLRKYCPKVEVIDGTRVAGGRRKLRINRLRIAAGFPIEKDR
RFVRPPPKEVLARMQNGDGDKIDENEMQKDTNGKDAAEDERGNGVYEDGS
NSGRGESFASTRKRSLPEDGAGEGDPEKCLEPSELIAQARAHVLGKAATQ
VIIPKASVPTQSKDTSKQKRKKRRTKDPERNQVESEFGIGGTSKWK*
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spliced messenger RNA

>Ggra9208.t1 ID=Ggra9208.t1|Name=Ggra9208.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1341bp|location=Sequence derived from alignment at tig00000075_pilon:389454..390794- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTTTCAAACGCAATAACTGAGAGCGGTAATGATTCAGAGGATGA
GGATCAACGAAATGTGCTCACCGCGGCCAAGGCCTCCGAGTTTTGCCCCA
AACACTACCGCCTAATTGCTCCGCGAAACGCGTTGACGCACCTAGACGAT
ATCTCCGCACTTTCTTCATTGGATTATGTTGATCTCACCGGAAACAAGCT
CACTTCGCTCAGTGGTCTAAGAAACAATCACAAGATCAAAACTCTCATTG
TTCGAGATAACAATCTTTCAGATTTAACTCCAGTGCTGAAACTTTCCGCC
TTGCGCGTTTTGAATATTGCACGCAATAAGTTTGTTTCAACAGACTGGCT
AGTTCATGCTTCGTTCGCAGGAGCGCTTTTGACGTTGGTTGCCAACGGAA
ATCAAATCAAGGAGCTTGAGGGTCTCTCTTGCCTCGGTGCTGTGAAAACG
TTGGTATTGAGCCACAACAGGATTGAGAACATGACTCCAGTAACAGCACT
ATCTTCACTCACAAAACTTTCGCTGTCAAGTAATGAAATCCGTGTCATTC
CAGATTCAATCAAGAGACTGCGAAGCCTCTCGGAGTTGCGACTGGCCCAT
AATCTAATCTCGTCTTTGCCAACTAAACAAGTTCTCAGCTCATTAGCTTG
TCTAAAGATTGTGGATCTAGGGCACAACCGCATTTCATCATTTGAAGCGC
TCGCCTTCATCGGCAATAGTATTGTGAATCTCAACGTCCGAAGCAACCCC
GCGACAAGTGAGCAAGATTTCACAGAAAACCTGCGAAAGTACTGCCCCAA
AGTTGAAGTAATTGATGGCACTCGAGTGGCTGGAGGAAGGCGAAAGCTGC
GAATCAACCGCCTTAGAATTGCTGCTGGATTCCCAATTGAAAAGGACCGT
AGATTTGTTCGGCCACCACCGAAAGAGGTACTGGCCAGAATGCAGAACGG
CGATGGGGACAAAATTGACGAGAATGAGATGCAGAAGGATACGAATGGAA
AAGATGCTGCTGAAGACGAAAGAGGAAACGGCGTTTATGAGGACGGTTCC
AACAGCGGACGGGGAGAGAGCTTCGCATCAACGCGAAAGCGAAGTTTGCC
AGAGGATGGAGCAGGTGAAGGGGACCCAGAAAAGTGTCTCGAACCGTCGG
AGCTCATTGCACAAGCACGGGCACATGTACTTGGCAAAGCAGCTACACAA
GTTATAATTCCAAAGGCCTCTGTTCCAACCCAATCTAAGGATACTTCGAA
GCAGAAAAGAAAAAAGAGGAGAACAAAGGACCCGGAAAGAAACCAAGTCG
AATCTGAGTTTGGGATTGGTGGCACAAGTAAGTGGAAGTAA
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protein sequence of Ggra9208.t1

>Ggra9208.t1 ID=Ggra9208.t1|Name=Ggra9208.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=447bp
MKLSNAITESGNDSEDEDQRNVLTAAKASEFCPKHYRLIAPRNALTHLDD
ISALSSLDYVDLTGNKLTSLSGLRNNHKIKTLIVRDNNLSDLTPVLKLSA
LRVLNIARNKFVSTDWLVHASFAGALLTLVANGNQIKELEGLSCLGAVKT
LVLSHNRIENMTPVTALSSLTKLSLSSNEIRVIPDSIKRLRSLSELRLAH
NLISSLPTKQVLSSLACLKIVDLGHNRISSFEALAFIGNSIVNLNVRSNP
ATSEQDFTENLRKYCPKVEVIDGTRVAGGRRKLRINRLRIAAGFPIEKDR
RFVRPPPKEVLARMQNGDGDKIDENEMQKDTNGKDAAEDERGNGVYEDGS
NSGRGESFASTRKRSLPEDGAGEGDPEKCLEPSELIAQARAHVLGKAATQ
VIIPKASVPTQSKDTSKQKRKKRRTKDPERNQVESEFGIGGTSKWK*
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mRNA from alignment at tig00000075_pilon:389454..390794-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9208.t1 ID=Ggra9208.t1|Name=Ggra9208.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1341bp|location=Sequence derived from alignment at tig00000075_pilon:389454..390794- (Gracilaria gracilis GNS1m male)
ATGAAGCTTTCAAACGCAATAACTGAGAGCGGTAATGATTCAGAGGATGA
GGATCAACGAAATGTGCTCACCGCGGCCAAGGCCTCCGAGTTTTGCCCCA
AACACTACCGCCTAATTGCTCCGCGAAACGCGTTGACGCACCTAGACGAT
ATCTCCGCACTTTCTTCATTGGATTATGTTGATCTCACCGGAAACAAGCT
CACTTCGCTCAGTGGTCTAAGAAACAATCACAAGATCAAAACTCTCATTG
TTCGAGATAACAATCTTTCAGATTTAACTCCAGTGCTGAAACTTTCCGCC
TTGCGCGTTTTGAATATTGCACGCAATAAGTTTGTTTCAACAGACTGGCT
AGTTCATGCTTCGTTCGCAGGAGCGCTTTTGACGTTGGTTGCCAACGGAA
ATCAAATCAAGGAGCTTGAGGGTCTCTCTTGCCTCGGTGCTGTGAAAACG
TTGGTATTGAGCCACAACAGGATTGAGAACATGACTCCAGTAACAGCACT
ATCTTCACTCACAAAACTTTCGCTGTCAAGTAATGAAATCCGTGTCATTC
CAGATTCAATCAAGAGACTGCGAAGCCTCTCGGAGTTGCGACTGGCCCAT
AATCTAATCTCGTCTTTGCCAACTAAACAAGTTCTCAGCTCATTAGCTTG
TCTAAAGATTGTGGATCTAGGGCACAACCGCATTTCATCATTTGAAGCGC
TCGCCTTCATCGGCAATAGTATTGTGAATCTCAACGTCCGAAGCAACCCC
GCGACAAGTGAGCAAGATTTCACAGAAAACCTGCGAAAGTACTGCCCCAA
AGTTGAAGTAATTGATGGCACTCGAGTGGCTGGAGGAAGGCGAAAGCTGC
GAATCAACCGCCTTAGAATTGCTGCTGGATTCCCAATTGAAAAGGACCGT
AGATTTGTTCGGCCACCACCGAAAGAGGTACTGGCCAGAATGCAGAACGG
CGATGGGGACAAAATTGACGAGAATGAGATGCAGAAGGATACGAATGGAA
AAGATGCTGCTGAAGACGAAAGAGGAAACGGCGTTTATGAGGACGGTTCC
AACAGCGGACGGGGAGAGAGCTTCGCATCAACGCGAAAGCGAAGTTTGCC
AGAGGATGGAGCAGGTGAAGGGGACCCAGAAAAGTGTCTCGAACCGTCGG
AGCTCATTGCACAAGCACGGGCACATGTACTTGGCAAAGCAGCTACACAA
GTTATAATTCCAAAGGCCTCTGTTCCAACCCAATCTAAGGATACTTCGAA
GCAGAAAAGAAAAAAGAGGAGAACAAAGGACCCGGAAAGAAACCAAGTCG
AATCTGAGTTTGGGATTGGTGGCACAAGTAAGTGGAAGTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:389454..390794-

>Ggra9208.t1 ID=Ggra9208.t1|Name=Ggra9208.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1341bp|location=Sequence derived from alignment at tig00000075_pilon:389454..390794- (Gracilaria gracilis GNS1m male)
ATGAAGCTTTCAAACGCAATAACTGAGAGCGGTAATGATTCAGAGGATGA
GGATCAACGAAATGTGCTCACCGCGGCCAAGGCCTCCGAGTTTTGCCCCA
AACACTACCGCCTAATTGCTCCGCGAAACGCGTTGACGCACCTAGACGAT
ATCTCCGCACTTTCTTCATTGGATTATGTTGATCTCACCGGAAACAAGCT
CACTTCGCTCAGTGGTCTAAGAAACAATCACAAGATCAAAACTCTCATTG
TTCGAGATAACAATCTTTCAGATTTAACTCCAGTGCTGAAACTTTCCGCC
TTGCGCGTTTTGAATATTGCACGCAATAAGTTTGTTTCAACAGACTGGCT
AGTTCATGCTTCGTTCGCAGGAGCGCTTTTGACGTTGGTTGCCAACGGAA
ATCAAATCAAGGAGCTTGAGGGTCTCTCTTGCCTCGGTGCTGTGAAAACG
TTGGTATTGAGCCACAACAGGATTGAGAACATGACTCCAGTAACAGCACT
ATCTTCACTCACAAAACTTTCGCTGTCAAGTAATGAAATCCGTGTCATTC
CAGATTCAATCAAGAGACTGCGAAGCCTCTCGGAGTTGCGACTGGCCCAT
AATCTAATCTCGTCTTTGCCAACTAAACAAGTTCTCAGCTCATTAGCTTG
TCTAAAGATTGTGGATCTAGGGCACAACCGCATTTCATCATTTGAAGCGC
TCGCCTTCATCGGCAATAGTATTGTGAATCTCAACGTCCGAAGCAACCCC
GCGACAAGTGAGCAAGATTTCACAGAAAACCTGCGAAAGTACTGCCCCAA
AGTTGAAGTAATTGATGGCACTCGAGTGGCTGGAGGAAGGCGAAAGCTGC
GAATCAACCGCCTTAGAATTGCTGCTGGATTCCCAATTGAAAAGGACCGT
AGATTTGTTCGGCCACCACCGAAAGAGGTACTGGCCAGAATGCAGAACGG
CGATGGGGACAAAATTGACGAGAATGAGATGCAGAAGGATACGAATGGAA
AAGATGCTGCTGAAGACGAAAGAGGAAACGGCGTTTATGAGGACGGTTCC
AACAGCGGACGGGGAGAGAGCTTCGCATCAACGCGAAAGCGAAGTTTGCC
AGAGGATGGAGCAGGTGAAGGGGACCCAGAAAAGTGTCTCGAACCGTCGG
AGCTCATTGCACAAGCACGGGCACATGTACTTGGCAAAGCAGCTACACAA
GTTATAATTCCAAAGGCCTCTGTTCCAACCCAATCTAAGGATACTTCGAA
GCAGAAAAGAAAAAAGAGGAGAACAAAGGACCCGGAAAGAAACCAAGTCG
AATCTGAGTTTGGGATTGGTGGCACAAGTAAGTGGAAGTAA
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