Ggra9205.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9205.t1
Unique Name	Ggra9205.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	416

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:381574..382821 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9205	Ggra9205	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 381574..382821 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9205.t1.start1	Ggra9205.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 381574..381576 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9205.t1.CDS1	Ggra9205.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 381574..382821 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9205.t1.exon1	Ggra9205.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 381574..382821 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9205.t1.stop1	Ggra9205.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 382819..382821 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9205.t1	Ggra9205.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 381574..382821 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:381574..382821+
coding sequence from alignment at tig00000075_pilon:381574..382821+

mRNA sequence

>Ggra9205.t1 ID=Ggra9205.t1|Name=Ggra9205.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=416bp
MGTVFFAIALAFASHLTIPFAYGNAVSQPVDSDIALEPVFRGYRIPFSRI
SVFLSPPAVREDARGLTGDPCFASVNCTDDRACRGLTGGECSVQSDVPCG
LCFPAQFKFCSKHNQCDAGEVCARTLVDPFVCLSASFVSQENTKMGTPLF
VTREDEDKLPSCRASDESDAEINDEPGSGHAVRPYPYTALSFENCSRSSD
CGEVGECVYGKFDYETGYNCCGGRDPSECYCIPKEPEPCSNDFDCSEIGE
MCMESFGKPAKCVSRKNSESLVKEWGMHPSGTKDQDTRTKTDETGKSSAA
SESSCIGHHHLSEMSPERLLYKTYRVARVLCDEQNSCATPGHIVKYNSIS
MMMSSYCDKNEVNCLSSIMKVNSPRYSVAAEVMSNTKGLTFTAFSARYRT
RYEETILSTLIRFGL*

spliced messenger RNA

>Ggra9205.t1 ID=Ggra9205.t1|Name=Ggra9205.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1248bp|location=Sequence derived from alignment at tig00000075_pilon:381574..382821+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCACGGTTTTCTTTGCTATCGCTCTAGCATTCGCTTCGCATCTTAC
GATTCCCTTCGCTTACGGAAATGCTGTCTCGCAACCTGTGGATTCCGATA
TAGCTTTAGAGCCTGTGTTCAGAGGTTACAGAATACCGTTCAGCAGAATT
TCTGTCTTCCTCTCTCCGCCGGCTGTAAGGGAAGATGCGAGAGGGTTGAC
TGGCGATCCGTGCTTTGCTAGTGTCAACTGCACAGATGATAGAGCATGTC
GCGGCTTAACAGGGGGTGAATGTAGTGTTCAGAGTGATGTGCCATGTGGA
CTATGCTTTCCTGCTCAGTTCAAGTTTTGCTCGAAACATAACCAATGTGA
CGCTGGAGAGGTCTGCGCGCGAACCCTGGTCGACCCATTTGTCTGCTTGT
CTGCATCCTTCGTGTCGCAAGAAAACACGAAAATGGGAACACCTCTTTTC
GTCACAAGGGAAGACGAGGATAAGCTCCCAAGTTGTAGAGCTTCTGATGA
GAGTGATGCTGAGATAAACGATGAGCCCGGTTCAGGCCATGCCGTTCGCC
CCTACCCATATACCGCACTGTCGTTTGAGAACTGTTCCCGGTCGTCTGAT
TGTGGTGAAGTAGGCGAATGTGTATATGGAAAGTTTGATTATGAGACTGG
GTACAACTGCTGTGGTGGACGTGATCCTTCCGAGTGCTACTGCATACCAA
AAGAACCTGAACCGTGCTCCAATGATTTCGATTGCAGTGAGATCGGCGAA
ATGTGCATGGAATCCTTCGGAAAGCCGGCCAAATGCGTTTCCAGAAAGAA
CTCTGAAAGCCTTGTCAAGGAATGGGGAATGCATCCAAGTGGAACGAAGG
ACCAAGATACGAGAACAAAAACCGATGAAACGGGAAAGAGCTCCGCAGCC
TCAGAGAGTTCGTGCATTGGTCACCACCATTTAAGTGAAATGTCCCCAGA
AAGGCTTTTGTACAAGACTTATAGAGTTGCAAGGGTTCTCTGTGACGAGC
AGAACAGTTGTGCAACCCCCGGTCACATTGTGAAGTACAACAGTATTTCC
ATGATGATGTCCTCGTATTGTGACAAGAATGAAGTGAATTGTCTTTCTTC
GATTATGAAGGTCAACAGCCCCCGCTACTCTGTCGCTGCTGAGGTAATGA
GTAATACTAAAGGGCTCACTTTCACCGCGTTTTCGGCTCGATATAGAACG
CGGTATGAGGAGACGATTCTTTCAACCTTGATTCGCTTCGGACTTTAG

protein sequence of Ggra9205.t1

>Ggra9205.t1 ID=Ggra9205.t1|Name=Ggra9205.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=416bp
MGTVFFAIALAFASHLTIPFAYGNAVSQPVDSDIALEPVFRGYRIPFSRI
SVFLSPPAVREDARGLTGDPCFASVNCTDDRACRGLTGGECSVQSDVPCG
LCFPAQFKFCSKHNQCDAGEVCARTLVDPFVCLSASFVSQENTKMGTPLF
VTREDEDKLPSCRASDESDAEINDEPGSGHAVRPYPYTALSFENCSRSSD
CGEVGECVYGKFDYETGYNCCGGRDPSECYCIPKEPEPCSNDFDCSEIGE
MCMESFGKPAKCVSRKNSESLVKEWGMHPSGTKDQDTRTKTDETGKSSAA
SESSCIGHHHLSEMSPERLLYKTYRVARVLCDEQNSCATPGHIVKYNSIS
MMMSSYCDKNEVNCLSSIMKVNSPRYSVAAEVMSNTKGLTFTAFSARYRT
RYEETILSTLIRFGL*

mRNA from alignment at tig00000075_pilon:381574..382821+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9205.t1 ID=Ggra9205.t1|Name=Ggra9205.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1248bp|location=Sequence derived from alignment at tig00000075_pilon:381574..382821+ (Gracilaria gracilis GNS1m male)
ATGGGCACGGTTTTCTTTGCTATCGCTCTAGCATTCGCTTCGCATCTTAC
GATTCCCTTCGCTTACGGAAATGCTGTCTCGCAACCTGTGGATTCCGATA
TAGCTTTAGAGCCTGTGTTCAGAGGTTACAGAATACCGTTCAGCAGAATT
TCTGTCTTCCTCTCTCCGCCGGCTGTAAGGGAAGATGCGAGAGGGTTGAC
TGGCGATCCGTGCTTTGCTAGTGTCAACTGCACAGATGATAGAGCATGTC
GCGGCTTAACAGGGGGTGAATGTAGTGTTCAGAGTGATGTGCCATGTGGA
CTATGCTTTCCTGCTCAGTTCAAGTTTTGCTCGAAACATAACCAATGTGA
CGCTGGAGAGGTCTGCGCGCGAACCCTGGTCGACCCATTTGTCTGCTTGT
CTGCATCCTTCGTGTCGCAAGAAAACACGAAAATGGGAACACCTCTTTTC
GTCACAAGGGAAGACGAGGATAAGCTCCCAAGTTGTAGAGCTTCTGATGA
GAGTGATGCTGAGATAAACGATGAGCCCGGTTCAGGCCATGCCGTTCGCC
CCTACCCATATACCGCACTGTCGTTTGAGAACTGTTCCCGGTCGTCTGAT
TGTGGTGAAGTAGGCGAATGTGTATATGGAAAGTTTGATTATGAGACTGG
GTACAACTGCTGTGGTGGACGTGATCCTTCCGAGTGCTACTGCATACCAA
AAGAACCTGAACCGTGCTCCAATGATTTCGATTGCAGTGAGATCGGCGAA
ATGTGCATGGAATCCTTCGGAAAGCCGGCCAAATGCGTTTCCAGAAAGAA
CTCTGAAAGCCTTGTCAAGGAATGGGGAATGCATCCAAGTGGAACGAAGG
ACCAAGATACGAGAACAAAAACCGATGAAACGGGAAAGAGCTCCGCAGCC
TCAGAGAGTTCGTGCATTGGTCACCACCATTTAAGTGAAATGTCCCCAGA
AAGGCTTTTGTACAAGACTTATAGAGTTGCAAGGGTTCTCTGTGACGAGC
AGAACAGTTGTGCAACCCCCGGTCACATTGTGAAGTACAACAGTATTTCC
ATGATGATGTCCTCGTATTGTGACAAGAATGAAGTGAATTGTCTTTCTTC
GATTATGAAGGTCAACAGCCCCCGCTACTCTGTCGCTGCTGAGGTAATGA
GTAATACTAAAGGGCTCACTTTCACCGCGTTTTCGGCTCGATATAGAACG
CGGTATGAGGAGACGATTCTTTCAACCTTGATTCGCTTCGGACTTTAG

Coding sequence (CDS) from alignment at tig00000075_pilon:381574..382821+

>Ggra9205.t1 ID=Ggra9205.t1|Name=Ggra9205.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1248bp|location=Sequence derived from alignment at tig00000075_pilon:381574..382821+ (Gracilaria gracilis GNS1m male)
ATGGGCACGGTTTTCTTTGCTATCGCTCTAGCATTCGCTTCGCATCTTAC
GATTCCCTTCGCTTACGGAAATGCTGTCTCGCAACCTGTGGATTCCGATA
TAGCTTTAGAGCCTGTGTTCAGAGGTTACAGAATACCGTTCAGCAGAATT
TCTGTCTTCCTCTCTCCGCCGGCTGTAAGGGAAGATGCGAGAGGGTTGAC
TGGCGATCCGTGCTTTGCTAGTGTCAACTGCACAGATGATAGAGCATGTC
GCGGCTTAACAGGGGGTGAATGTAGTGTTCAGAGTGATGTGCCATGTGGA
CTATGCTTTCCTGCTCAGTTCAAGTTTTGCTCGAAACATAACCAATGTGA
CGCTGGAGAGGTCTGCGCGCGAACCCTGGTCGACCCATTTGTCTGCTTGT
CTGCATCCTTCGTGTCGCAAGAAAACACGAAAATGGGAACACCTCTTTTC
GTCACAAGGGAAGACGAGGATAAGCTCCCAAGTTGTAGAGCTTCTGATGA
GAGTGATGCTGAGATAAACGATGAGCCCGGTTCAGGCCATGCCGTTCGCC
CCTACCCATATACCGCACTGTCGTTTGAGAACTGTTCCCGGTCGTCTGAT
TGTGGTGAAGTAGGCGAATGTGTATATGGAAAGTTTGATTATGAGACTGG
GTACAACTGCTGTGGTGGACGTGATCCTTCCGAGTGCTACTGCATACCAA
AAGAACCTGAACCGTGCTCCAATGATTTCGATTGCAGTGAGATCGGCGAA
ATGTGCATGGAATCCTTCGGAAAGCCGGCCAAATGCGTTTCCAGAAAGAA
CTCTGAAAGCCTTGTCAAGGAATGGGGAATGCATCCAAGTGGAACGAAGG
ACCAAGATACGAGAACAAAAACCGATGAAACGGGAAAGAGCTCCGCAGCC
TCAGAGAGTTCGTGCATTGGTCACCACCATTTAAGTGAAATGTCCCCAGA
AAGGCTTTTGTACAAGACTTATAGAGTTGCAAGGGTTCTCTGTGACGAGC
AGAACAGTTGTGCAACCCCCGGTCACATTGTGAAGTACAACAGTATTTCC
ATGATGATGTCCTCGTATTGTGACAAGAATGAAGTGAATTGTCTTTCTTC
GATTATGAAGGTCAACAGCCCCCGCTACTCTGTCGCTGCTGAGGTAATGA
GTAATACTAAAGGGCTCACTTTCACCGCGTTTTCGGCTCGATATAGAACG
CGGTATGAGGAGACGATTCTTTCAACCTTGATTCGCTTCGGACTTTAG