Ggra9202.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9202.t1
Unique NameGgra9202.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:370810..371508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9202Ggra9202Gracilaria gracilis GNS1m malegenetig00000075_pilon 370810..371508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9202.t1Ggra9202.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 370810..371508 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9202.t1.stop1Ggra9202.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 370810..370812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9202.t1.CDS1Ggra9202.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 370810..371031 -
Ggra9202.t1.CDS2Ggra9202.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 371110..371405 -
Ggra9202.t1.CDS3Ggra9202.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000075_pilon 371499..371508 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9202.t1.exon1Ggra9202.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 370810..371031 -
Ggra9202.t1.exon2Ggra9202.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 371110..371405 -
Ggra9202.t1.exon3Ggra9202.t1.exon3Gracilaria gracilis GNS1m maleexontig00000075_pilon 371499..371508 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9202.t1.intron1Ggra9202.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 371032..371109 -
Ggra9202.t1.intron2Ggra9202.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000075_pilon 371406..371498 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9202.t1.start1Ggra9202.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 371506..371508 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9202.t1 ID=Ggra9202.t1|Name=Ggra9202.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=176bp
MAEAPGSTSRLRELLNKFEGARPPSPPKKERIISGLDPKRGPLSKEAVSA
REASQNRLSSRSAEAEQAARPKRYVPRIAATDSDEVRDLKRAILAKEQEI
SGEEQNGAKKKPDQRVKAFTVDATKAVEGVVEKSKKQSAGSSPTSLEAIL
AAARSGQPRTGGEKPKYSKLLRDMN*
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spliced messenger RNA

>Ggra9202.t1 ID=Ggra9202.t1|Name=Ggra9202.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00000075_pilon:370810..371508- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAAGCACCGGGCTCCACATCACGCTTGCGCGAGTTGCTTAACAA
GTTCGAAGGAGCACGTCCTCCATCCCCTCCAAAAAAGGAACGAATAATAA
GTGGATTGGATCCGAAGCGCGGTCCCTTATCAAAAGAAGCAGTCTCTGCC
CGAGAAGCGAGCCAGAACAGACTATCATCACGTTCAGCCGAAGCCGAACA
AGCAGCGCGTCCAAAGCGATATGTCCCGCGTATTGCCGCAACAGACTCCG
ATGAAGTGCGCGACTTGAAGAGGGCCATTCTTGCCAAGGAGCAAGAAATA
TCTGGTGAAGAACAGAACGGTGCGAAGAAGAAACCCGATCAAAGGGTGAA
AGCGTTTACAGTCGATGCGACGAAAGCTGTTGAAGGTGTCGTTGAGAAGT
CGAAGAAACAATCAGCTGGCTCTTCCCCGACATCACTGGAAGCCATTCTT
GCTGCTGCCAGAAGTGGTCAGCCTCGCACGGGCGGCGAAAAGCCCAAGTA
CTCGAAGCTTCTACGTGACATGAACTAG
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protein sequence of Ggra9202.t1

>Ggra9202.t1 ID=Ggra9202.t1|Name=Ggra9202.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=176bp
MAEAPGSTSRLRELLNKFEGARPPSPPKKERIISGLDPKRGPLSKEAVSA
REASQNRLSSRSAEAEQAARPKRYVPRIAATDSDEVRDLKRAILAKEQEI
SGEEQNGAKKKPDQRVKAFTVDATKAVEGVVEKSKKQSAGSSPTSLEAIL
AAARSGQPRTGGEKPKYSKLLRDMN*
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mRNA from alignment at tig00000075_pilon:370810..371508-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9202.t1 ID=Ggra9202.t1|Name=Ggra9202.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000075_pilon:370810..371508- (Gracilaria gracilis GNS1m male)
ATGGCAGAAGGTACGTTCATACAAGCTCCGCTCTGCCACATATGCCGCTG
AGTTCGGAATGTAATTGTCACTAACATGAAATGTGTGCTACCATCAATGT
TAGCACCGGGCTCCACATCACGCTTGCGCGAGTTGCTTAACAAGTTCGAA
GGAGCACGTCCTCCATCCCCTCCAAAAAAGGAACGAATAATAAGTGGATT
GGATCCGAAGCGCGGTCCCTTATCAAAAGAAGCAGTCTCTGCCCGAGAAG
CGAGCCAGAACAGACTATCATCACGTTCAGCCGAAGCCGAACAAGCAGCG
CGTCCAAAGCGATATGTCCCGCGTATTGCCGCAACAGACTCCGATGAAGT
GCGCGACTTGAAGAGGGCCATTCTTGCCAAGGAGCAAGAAATATCTGGTG
TATGTACGCAGCTTAAAGCCATAGCTGACAGAATCGATCGCGCGCTAGAG
ATTTTTCTTGCTTCTGACATTGAGAAGGAAGAACAGAACGGTGCGAAGAA
GAAACCCGATCAAAGGGTGAAAGCGTTTACAGTCGATGCGACGAAAGCTG
TTGAAGGTGTCGTTGAGAAGTCGAAGAAACAATCAGCTGGCTCTTCCCCG
ACATCACTGGAAGCCATTCTTGCTGCTGCCAGAAGTGGTCAGCCTCGCAC
GGGCGGCGAAAAGCCCAAGTACTCGAAGCTTCTACGTGACATGAACTAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:370810..371508-

>Ggra9202.t1 ID=Ggra9202.t1|Name=Ggra9202.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=528bp|location=Sequence derived from alignment at tig00000075_pilon:370810..371508- (Gracilaria gracilis GNS1m male)
ATGGCAGAAGCACCGGGCTCCACATCACGCTTGCGCGAGTTGCTTAACAA
GTTCGAAGGAGCACGTCCTCCATCCCCTCCAAAAAAGGAACGAATAATAA
GTGGATTGGATCCGAAGCGCGGTCCCTTATCAAAAGAAGCAGTCTCTGCC
CGAGAAGCGAGCCAGAACAGACTATCATCACGTTCAGCCGAAGCCGAACA
AGCAGCGCGTCCAAAGCGATATGTCCCGCGTATTGCCGCAACAGACTCCG
ATGAAGTGCGCGACTTGAAGAGGGCCATTCTTGCCAAGGAGCAAGAAATA
TCTGGTGAAGAACAGAACGGTGCGAAGAAGAAACCCGATCAAAGGGTGAA
AGCGTTTACAGTCGATGCGACGAAAGCTGTTGAAGGTGTCGTTGAGAAGT
CGAAGAAACAATCAGCTGGCTCTTCCCCGACATCACTGGAAGCCATTCTT
GCTGCTGCCAGAAGTGGTCAGCCTCGCACGGGCGGCGAAAAGCCCAAGTA
CTCGAAGCTTCTACGTGACATGAACTAG
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