Ggra9201.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9201.t1
Unique NameGgra9201.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length554
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:368779..370440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMH121CT
Preferred nameCD
PFAMsCys_Met_Meta_PP
Max annot lvl2759|Eukaryota
KEGG rclassRC00056,RC00069,RC00382,RC00488,RC00710,RC01245,RC02303
KEGG koko:K01760
KEGG ReactionR00782,R01286,R02408,R04941
KEGG Pathwayko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230
KEGG ModuleM00017
GOsGO:0000096,GO:0000098,GO:0000724,GO:0000725,GO:0003674,GO:0003824,GO:0006082,GO:0006090,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006520,GO:0006534,GO:0006725,GO:0006790,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009093,GO:0009987,GO:0016054,GO:0016829,GO:0016846,GO:0019448,GO:0019450,GO:0019752,GO:0032787,GO:0033554,GO:0034641,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044273,GO:0044281,GO:0044282,GO:0046395,GO:0046439,GO:0046483,GO:0047804,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1990414
Evalue7.28e-186
EggNOG OGsCOG0626@1|root,KOG0053@2759|Eukaryota
EC4.4.1.8
Descriptioncystathionine gamma-synthase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9201Ggra9201Gracilaria gracilis GNS1m malegenetig00000075_pilon 368779..370440 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9201.t1.start1Ggra9201.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 368779..368781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9201.t1.CDS1Ggra9201.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 368779..370440 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9201.t1.exon1Ggra9201.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 368779..370440 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9201.t1.stop1Ggra9201.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 370438..370440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9201.t1Ggra9201.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 368779..370440 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9201.t1 ID=Ggra9201.t1|Name=Ggra9201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=554bp
MLLILITVRIISPSHVFLGLDHLSTRDIYDLIEILLLRDGDFVYIASIWC
ETKVLRQTTLENIWCFEDYEVEIFSPRNQYSIDHTSPDSDMGSFPAFISP
LPLIPRSNPIPSRACRTTKMSQQAPPSIQAEPDPSTHSTLRVSGKNLELS
HVNMDTRIVHGGVHKDEWTTDPLKRSVVNPPVYHASTVTFPNVAALRFAA
SDWPFTGMWYGRHGNPTTFALEEAFSTLEGADNACITSSGVAAVNASLLA
FVQSGDHLLITDAVYDPTRSFCDVFLKRFGVDTTYYSPTSSLDQIRELIR
ENTKLILVESPASLSFEVMDVPAIAELAHAHNLKVLIDNTWGPTLFSPFE
NGCDVSINAVTKYIGGHSDLMMGIIAAKDPDTYRAVKNSVVQLGCPPGSD
DAYLALRGLRTLGVRLRQHEESALKIAKWLEGRPEVVRVMHPALESHPQH
ELFKRQFKGSSGLFGFQLKEGISQKAIDGMLDGMKLHAMGFSWGGFESLL
MQTNINSYRTVEKWRYGDGYGYTMRIHVGLEDVNDLINDLEEGFERLNRL
NTS*
back to top

spliced messenger RNA

>Ggra9201.t1 ID=Ggra9201.t1|Name=Ggra9201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1662bp|location=Sequence derived from alignment at tig00000075_pilon:368779..370440+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTTGATCTTGATCACGGTGCGGATCATTTCTCCTTCTCATGTTTT
TCTTGGGCTCGATCACCTATCCACTAGAGATATCTATGATTTGATTGAAA
TCCTGCTTCTTCGAGACGGAGATTTTGTCTACATAGCTTCAATCTGGTGT
GAAACAAAGGTACTGCGCCAGACCACATTGGAAAACATTTGGTGCTTCGA
AGATTACGAGGTGGAAATCTTTAGTCCACGAAATCAATACTCAATCGACC
ACACCTCACCTGATTCGGATATGGGCAGTTTCCCAGCTTTCATCTCCCCA
CTTCCACTGATACCAAGAAGCAATCCAATCCCATCCAGAGCATGCAGGAC
TACCAAAATGTCACAGCAGGCTCCACCTTCGATACAAGCTGAGCCAGATC
CTTCAACACACTCTACGCTGCGTGTGTCTGGAAAGAATCTTGAACTCTCC
CACGTGAATATGGATACGCGCATCGTCCACGGCGGAGTGCACAAAGATGA
GTGGACCACAGACCCTCTTAAGCGATCAGTTGTCAATCCGCCCGTATATC
ACGCATCCACAGTCACTTTCCCAAACGTAGCGGCGCTTCGTTTTGCTGCT
TCAGATTGGCCCTTCACTGGCATGTGGTACGGGCGGCATGGAAACCCCAC
AACTTTCGCTCTCGAAGAAGCTTTTTCAACCCTAGAGGGAGCTGATAATG
CTTGTATCACTTCTTCGGGTGTTGCCGCTGTGAATGCTTCTCTCTTGGCT
TTTGTACAATCTGGAGATCATCTTCTAATTACGGATGCTGTCTATGACCC
AACCAGATCTTTTTGCGATGTATTCTTGAAACGTTTTGGAGTCGACACCA
CTTACTACTCTCCCACTTCCTCACTCGACCAAATCCGTGAGCTCATACGG
GAAAATACAAAGCTTATCCTCGTGGAATCTCCGGCTAGTTTATCATTCGA
AGTGATGGACGTTCCGGCTATTGCGGAACTTGCGCATGCGCATAACTTAA
AGGTGCTTATCGATAACACATGGGGCCCTACTCTCTTCTCACCGTTTGAG
AATGGCTGTGACGTTTCTATAAACGCAGTTACTAAATACATTGGTGGGCA
TTCGGATCTCATGATGGGTATAATTGCCGCAAAGGATCCAGACACATATC
GTGCAGTGAAGAATTCAGTTGTACAACTGGGTTGTCCTCCTGGCTCAGAC
GACGCCTACCTGGCATTGCGTGGTCTCCGAACGCTAGGAGTTCGGCTCAG
ACAGCATGAAGAAAGTGCGCTGAAAATAGCAAAGTGGCTTGAAGGCCGCC
CGGAGGTAGTGCGTGTCATGCACCCTGCTCTAGAGAGTCATCCGCAACAC
GAGTTATTTAAAAGACAATTTAAGGGTTCCTCAGGGTTGTTCGGGTTTCA
ACTTAAGGAAGGAATCTCGCAAAAGGCAATAGATGGTATGCTTGACGGCA
TGAAGTTACATGCTATGGGCTTCTCATGGGGTGGGTTCGAGAGCTTACTC
ATGCAGACTAACATAAACTCCTACAGAACAGTCGAAAAGTGGAGGTATGG
GGATGGATATGGGTATACTATGAGAATTCATGTCGGACTGGAAGATGTCA
ATGATCTCATAAATGATCTTGAAGAAGGTTTTGAACGACTAAACAGGCTG
AACACATCGTAA
back to top

protein sequence of Ggra9201.t1

>Ggra9201.t1 ID=Ggra9201.t1|Name=Ggra9201.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=554bp
MLLILITVRIISPSHVFLGLDHLSTRDIYDLIEILLLRDGDFVYIASIWC
ETKVLRQTTLENIWCFEDYEVEIFSPRNQYSIDHTSPDSDMGSFPAFISP
LPLIPRSNPIPSRACRTTKMSQQAPPSIQAEPDPSTHSTLRVSGKNLELS
HVNMDTRIVHGGVHKDEWTTDPLKRSVVNPPVYHASTVTFPNVAALRFAA
SDWPFTGMWYGRHGNPTTFALEEAFSTLEGADNACITSSGVAAVNASLLA
FVQSGDHLLITDAVYDPTRSFCDVFLKRFGVDTTYYSPTSSLDQIRELIR
ENTKLILVESPASLSFEVMDVPAIAELAHAHNLKVLIDNTWGPTLFSPFE
NGCDVSINAVTKYIGGHSDLMMGIIAAKDPDTYRAVKNSVVQLGCPPGSD
DAYLALRGLRTLGVRLRQHEESALKIAKWLEGRPEVVRVMHPALESHPQH
ELFKRQFKGSSGLFGFQLKEGISQKAIDGMLDGMKLHAMGFSWGGFESLL
MQTNINSYRTVEKWRYGDGYGYTMRIHVGLEDVNDLINDLEEGFERLNRL
NTS*
back to top

mRNA from alignment at tig00000075_pilon:368779..370440+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9201.t1 ID=Ggra9201.t1|Name=Ggra9201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1662bp|location=Sequence derived from alignment at tig00000075_pilon:368779..370440+ (Gracilaria gracilis GNS1m male)
ATGCTTTTGATCTTGATCACGGTGCGGATCATTTCTCCTTCTCATGTTTT
TCTTGGGCTCGATCACCTATCCACTAGAGATATCTATGATTTGATTGAAA
TCCTGCTTCTTCGAGACGGAGATTTTGTCTACATAGCTTCAATCTGGTGT
GAAACAAAGGTACTGCGCCAGACCACATTGGAAAACATTTGGTGCTTCGA
AGATTACGAGGTGGAAATCTTTAGTCCACGAAATCAATACTCAATCGACC
ACACCTCACCTGATTCGGATATGGGCAGTTTCCCAGCTTTCATCTCCCCA
CTTCCACTGATACCAAGAAGCAATCCAATCCCATCCAGAGCATGCAGGAC
TACCAAAATGTCACAGCAGGCTCCACCTTCGATACAAGCTGAGCCAGATC
CTTCAACACACTCTACGCTGCGTGTGTCTGGAAAGAATCTTGAACTCTCC
CACGTGAATATGGATACGCGCATCGTCCACGGCGGAGTGCACAAAGATGA
GTGGACCACAGACCCTCTTAAGCGATCAGTTGTCAATCCGCCCGTATATC
ACGCATCCACAGTCACTTTCCCAAACGTAGCGGCGCTTCGTTTTGCTGCT
TCAGATTGGCCCTTCACTGGCATGTGGTACGGGCGGCATGGAAACCCCAC
AACTTTCGCTCTCGAAGAAGCTTTTTCAACCCTAGAGGGAGCTGATAATG
CTTGTATCACTTCTTCGGGTGTTGCCGCTGTGAATGCTTCTCTCTTGGCT
TTTGTACAATCTGGAGATCATCTTCTAATTACGGATGCTGTCTATGACCC
AACCAGATCTTTTTGCGATGTATTCTTGAAACGTTTTGGAGTCGACACCA
CTTACTACTCTCCCACTTCCTCACTCGACCAAATCCGTGAGCTCATACGG
GAAAATACAAAGCTTATCCTCGTGGAATCTCCGGCTAGTTTATCATTCGA
AGTGATGGACGTTCCGGCTATTGCGGAACTTGCGCATGCGCATAACTTAA
AGGTGCTTATCGATAACACATGGGGCCCTACTCTCTTCTCACCGTTTGAG
AATGGCTGTGACGTTTCTATAAACGCAGTTACTAAATACATTGGTGGGCA
TTCGGATCTCATGATGGGTATAATTGCCGCAAAGGATCCAGACACATATC
GTGCAGTGAAGAATTCAGTTGTACAACTGGGTTGTCCTCCTGGCTCAGAC
GACGCCTACCTGGCATTGCGTGGTCTCCGAACGCTAGGAGTTCGGCTCAG
ACAGCATGAAGAAAGTGCGCTGAAAATAGCAAAGTGGCTTGAAGGCCGCC
CGGAGGTAGTGCGTGTCATGCACCCTGCTCTAGAGAGTCATCCGCAACAC
GAGTTATTTAAAAGACAATTTAAGGGTTCCTCAGGGTTGTTCGGGTTTCA
ACTTAAGGAAGGAATCTCGCAAAAGGCAATAGATGGTATGCTTGACGGCA
TGAAGTTACATGCTATGGGCTTCTCATGGGGTGGGTTCGAGAGCTTACTC
ATGCAGACTAACATAAACTCCTACAGAACAGTCGAAAAGTGGAGGTATGG
GGATGGATATGGGTATACTATGAGAATTCATGTCGGACTGGAAGATGTCA
ATGATCTCATAAATGATCTTGAAGAAGGTTTTGAACGACTAAACAGGCTG
AACACATCGTAA
back to top

Coding sequence (CDS) from alignment at tig00000075_pilon:368779..370440+

>Ggra9201.t1 ID=Ggra9201.t1|Name=Ggra9201.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1662bp|location=Sequence derived from alignment at tig00000075_pilon:368779..370440+ (Gracilaria gracilis GNS1m male)
ATGCTTTTGATCTTGATCACGGTGCGGATCATTTCTCCTTCTCATGTTTT
TCTTGGGCTCGATCACCTATCCACTAGAGATATCTATGATTTGATTGAAA
TCCTGCTTCTTCGAGACGGAGATTTTGTCTACATAGCTTCAATCTGGTGT
GAAACAAAGGTACTGCGCCAGACCACATTGGAAAACATTTGGTGCTTCGA
AGATTACGAGGTGGAAATCTTTAGTCCACGAAATCAATACTCAATCGACC
ACACCTCACCTGATTCGGATATGGGCAGTTTCCCAGCTTTCATCTCCCCA
CTTCCACTGATACCAAGAAGCAATCCAATCCCATCCAGAGCATGCAGGAC
TACCAAAATGTCACAGCAGGCTCCACCTTCGATACAAGCTGAGCCAGATC
CTTCAACACACTCTACGCTGCGTGTGTCTGGAAAGAATCTTGAACTCTCC
CACGTGAATATGGATACGCGCATCGTCCACGGCGGAGTGCACAAAGATGA
GTGGACCACAGACCCTCTTAAGCGATCAGTTGTCAATCCGCCCGTATATC
ACGCATCCACAGTCACTTTCCCAAACGTAGCGGCGCTTCGTTTTGCTGCT
TCAGATTGGCCCTTCACTGGCATGTGGTACGGGCGGCATGGAAACCCCAC
AACTTTCGCTCTCGAAGAAGCTTTTTCAACCCTAGAGGGAGCTGATAATG
CTTGTATCACTTCTTCGGGTGTTGCCGCTGTGAATGCTTCTCTCTTGGCT
TTTGTACAATCTGGAGATCATCTTCTAATTACGGATGCTGTCTATGACCC
AACCAGATCTTTTTGCGATGTATTCTTGAAACGTTTTGGAGTCGACACCA
CTTACTACTCTCCCACTTCCTCACTCGACCAAATCCGTGAGCTCATACGG
GAAAATACAAAGCTTATCCTCGTGGAATCTCCGGCTAGTTTATCATTCGA
AGTGATGGACGTTCCGGCTATTGCGGAACTTGCGCATGCGCATAACTTAA
AGGTGCTTATCGATAACACATGGGGCCCTACTCTCTTCTCACCGTTTGAG
AATGGCTGTGACGTTTCTATAAACGCAGTTACTAAATACATTGGTGGGCA
TTCGGATCTCATGATGGGTATAATTGCCGCAAAGGATCCAGACACATATC
GTGCAGTGAAGAATTCAGTTGTACAACTGGGTTGTCCTCCTGGCTCAGAC
GACGCCTACCTGGCATTGCGTGGTCTCCGAACGCTAGGAGTTCGGCTCAG
ACAGCATGAAGAAAGTGCGCTGAAAATAGCAAAGTGGCTTGAAGGCCGCC
CGGAGGTAGTGCGTGTCATGCACCCTGCTCTAGAGAGTCATCCGCAACAC
GAGTTATTTAAAAGACAATTTAAGGGTTCCTCAGGGTTGTTCGGGTTTCA
ACTTAAGGAAGGAATCTCGCAAAAGGCAATAGATGGTATGCTTGACGGCA
TGAAGTTACATGCTATGGGCTTCTCATGGGGTGGGTTCGAGAGCTTACTC
ATGCAGACTAACATAAACTCCTACAGAACAGTCGAAAAGTGGAGGTATGG
GGATGGATATGGGTATACTATGAGAATTCATGTCGGACTGGAAGATGTCA
ATGATCTCATAAATGATCTTGAAGAAGGTTTTGAACGACTAAACAGGCTG
AACACATCGTAA
back to top