Ggra9199.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9199.t2
Unique Name	Ggra9199.t2
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	578

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:364982..366715 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9199	Ggra9199	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 364982..366715 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9199.t2.start1	Ggra9199.t2.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 364982..364984 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9199.t2.CDS1	Ggra9199.t2.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 364982..366715 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9199.t2.exon1	Ggra9199.t2.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 364982..366715 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9199.t2.stop1	Ggra9199.t2.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 366713..366715 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9199.t2	Ggra9199.t2	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 364982..366715 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:364982..366715+
coding sequence from alignment at tig00000075_pilon:364982..366715+

mRNA sequence

>Ggra9199.t2 ID=Ggra9199.t2|Name=Ggra9199.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=578bp
MLRFAKLRRGGSSDVQLPPFDPESHPPGHATARMDPPAQDGKRSVEVSGA
KMSLRSLFKQRPRQSRKQSADEVSVPSSINSTSPPSASASQVPSAESIVP
TMTPEEKRAKEARRKARRAERERKEREWNEENRERRNQSIITGVSFDPLP
PLSGFDSASEDERERPPKQSQTDDFERRGSGTSSMRTSQEAPHLDIAAAT
LPRSHTDDAKLAEMFGAQALLTAPQPAKRSTLPSAPAEDANTGYASPGLN
ESAPKPPQNSFPQASDLIRPSKQPAPIGWGDAYDTVPSQPLYGTPSHLVQ
RGPTAIESALADKISRGRELALLAIEQEEQGNMGAAEAGYMKALGLLVPA
SKELDIGSELSRNARMAMKAKVQREASAMLDRCEQLRLFLKATAPSVPTD
VPDMPKVGNSSSRSRGPRNKSPLRKTRTSLDEDPISPNSAVMPPRAKTKK
SKVKPQIYIPPPPPPAFQDNPRELFQRIEDRKNVLSAASVAFPSSSDTLI
KEGKAVHSRTRETHAKCFMCNETAHLSTPCNHEFCSNCGNQAVSVFGKCP
VPGCTTQLTTESFSHILPKNVHPGSRR*

spliced messenger RNA

>Ggra9199.t2 ID=Ggra9199.t2|Name=Ggra9199.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1734bp|location=Sequence derived from alignment at tig00000075_pilon:364982..366715+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACGTTTCGCAAAACTCCGCCGGGGCGGAAGCTCCGACGTTCAACT
GCCACCATTTGACCCTGAATCCCATCCGCCAGGGCACGCAACCGCAAGAA
TGGATCCCCCTGCACAAGACGGAAAGCGGTCTGTGGAAGTTTCCGGTGCA
AAGATGTCCCTTCGATCACTATTCAAGCAAAGACCTCGACAGTCCCGAAA
ACAGTCTGCCGATGAAGTCTCTGTACCGTCAAGTATCAATTCAACATCTC
CACCTTCGGCCTCTGCCTCTCAAGTGCCAAGCGCCGAATCCATTGTACCA
ACAATGACTCCTGAAGAGAAGCGTGCTAAGGAAGCTCGTCGTAAAGCGCG
TCGTGCCGAGCGGGAGCGTAAAGAACGTGAATGGAATGAAGAGAATCGTG
AGCGTCGCAACCAAAGCATTATCACTGGGGTTTCGTTCGACCCGTTGCCA
CCTCTCTCTGGTTTCGACTCTGCTTCAGAAGATGAGCGCGAGAGGCCACC
AAAACAATCCCAGACTGATGATTTTGAGCGACGAGGGTCTGGAACAAGCT
CAATGCGGACTTCCCAAGAAGCCCCACACCTCGATATTGCGGCTGCCACA
CTGCCAAGAAGCCATACTGACGACGCGAAACTAGCGGAGATGTTTGGAGC
TCAAGCGCTTTTGACGGCTCCTCAACCGGCTAAGCGGTCAACCCTGCCTT
CAGCACCTGCCGAGGATGCCAATACTGGATACGCCTCTCCAGGGCTTAAT
GAAAGTGCGCCAAAGCCACCGCAAAACTCTTTCCCACAAGCGAGTGATTT
GATACGGCCTTCGAAGCAGCCAGCTCCCATCGGATGGGGTGATGCATATG
ATACCGTGCCTTCACAGCCGCTTTACGGCACACCTTCTCATCTAGTCCAA
AGAGGACCGACAGCCATTGAATCTGCCTTGGCAGACAAAATAAGTCGTGG
ACGCGAGTTAGCGCTGTTGGCAATAGAACAAGAAGAACAAGGAAACATGG
GTGCCGCCGAAGCGGGGTACATGAAGGCATTAGGTCTTCTTGTTCCAGCT
TCTAAGGAGCTTGATATCGGATCCGAACTTAGTCGCAATGCGCGCATGGC
AATGAAGGCCAAGGTGCAACGTGAAGCTTCTGCGATGCTCGACAGGTGTG
AGCAATTACGCCTCTTCCTCAAGGCGACAGCACCTAGTGTACCAACTGAT
GTTCCAGACATGCCAAAAGTAGGAAACTCATCCTCTCGATCGAGAGGGCC
ACGTAACAAAAGTCCGCTTCGGAAAACGCGAACAAGCTTGGACGAGGACC
CGATATCTCCAAATTCTGCGGTAATGCCCCCACGAGCCAAAACGAAGAAG
TCCAAGGTTAAGCCTCAGATATACATTCCGCCTCCGCCTCCTCCAGCATT
CCAGGATAATCCACGAGAGCTTTTCCAGAGAATTGAAGATCGCAAGAACG
TGCTTTCAGCTGCCTCCGTGGCGTTCCCCTCCTCATCTGATACTCTGATC
AAAGAAGGGAAAGCCGTACATTCAAGGACTCGAGAAACGCATGCGAAGTG
CTTCATGTGCAATGAAACCGCCCATCTGAGCACCCCATGCAATCATGAGT
TTTGCTCGAATTGTGGTAATCAAGCTGTGTCTGTTTTCGGAAAGTGTCCT
GTACCGGGATGCACCACTCAGCTTACCACGGAGTCGTTCAGTCACATTTT
GCCGAAGAACGTACATCCCGGAAGTCGAAGGTAG

protein sequence of Ggra9199.t2

>Ggra9199.t2 ID=Ggra9199.t2|Name=Ggra9199.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=578bp
MLRFAKLRRGGSSDVQLPPFDPESHPPGHATARMDPPAQDGKRSVEVSGA
KMSLRSLFKQRPRQSRKQSADEVSVPSSINSTSPPSASASQVPSAESIVP
TMTPEEKRAKEARRKARRAERERKEREWNEENRERRNQSIITGVSFDPLP
PLSGFDSASEDERERPPKQSQTDDFERRGSGTSSMRTSQEAPHLDIAAAT
LPRSHTDDAKLAEMFGAQALLTAPQPAKRSTLPSAPAEDANTGYASPGLN
ESAPKPPQNSFPQASDLIRPSKQPAPIGWGDAYDTVPSQPLYGTPSHLVQ
RGPTAIESALADKISRGRELALLAIEQEEQGNMGAAEAGYMKALGLLVPA
SKELDIGSELSRNARMAMKAKVQREASAMLDRCEQLRLFLKATAPSVPTD
VPDMPKVGNSSSRSRGPRNKSPLRKTRTSLDEDPISPNSAVMPPRAKTKK
SKVKPQIYIPPPPPPAFQDNPRELFQRIEDRKNVLSAASVAFPSSSDTLI
KEGKAVHSRTRETHAKCFMCNETAHLSTPCNHEFCSNCGNQAVSVFGKCP
VPGCTTQLTTESFSHILPKNVHPGSRR*

mRNA from alignment at tig00000075_pilon:364982..366715+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9199.t2 ID=Ggra9199.t2|Name=Ggra9199.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1734bp|location=Sequence derived from alignment at tig00000075_pilon:364982..366715+ (Gracilaria gracilis GNS1m male)
ATGTTACGTTTCGCAAAACTCCGCCGGGGCGGAAGCTCCGACGTTCAACT
GCCACCATTTGACCCTGAATCCCATCCGCCAGGGCACGCAACCGCAAGAA
TGGATCCCCCTGCACAAGACGGAAAGCGGTCTGTGGAAGTTTCCGGTGCA
AAGATGTCCCTTCGATCACTATTCAAGCAAAGACCTCGACAGTCCCGAAA
ACAGTCTGCCGATGAAGTCTCTGTACCGTCAAGTATCAATTCAACATCTC
CACCTTCGGCCTCTGCCTCTCAAGTGCCAAGCGCCGAATCCATTGTACCA
ACAATGACTCCTGAAGAGAAGCGTGCTAAGGAAGCTCGTCGTAAAGCGCG
TCGTGCCGAGCGGGAGCGTAAAGAACGTGAATGGAATGAAGAGAATCGTG
AGCGTCGCAACCAAAGCATTATCACTGGGGTTTCGTTCGACCCGTTGCCA
CCTCTCTCTGGTTTCGACTCTGCTTCAGAAGATGAGCGCGAGAGGCCACC
AAAACAATCCCAGACTGATGATTTTGAGCGACGAGGGTCTGGAACAAGCT
CAATGCGGACTTCCCAAGAAGCCCCACACCTCGATATTGCGGCTGCCACA
CTGCCAAGAAGCCATACTGACGACGCGAAACTAGCGGAGATGTTTGGAGC
TCAAGCGCTTTTGACGGCTCCTCAACCGGCTAAGCGGTCAACCCTGCCTT
CAGCACCTGCCGAGGATGCCAATACTGGATACGCCTCTCCAGGGCTTAAT
GAAAGTGCGCCAAAGCCACCGCAAAACTCTTTCCCACAAGCGAGTGATTT
GATACGGCCTTCGAAGCAGCCAGCTCCCATCGGATGGGGTGATGCATATG
ATACCGTGCCTTCACAGCCGCTTTACGGCACACCTTCTCATCTAGTCCAA
AGAGGACCGACAGCCATTGAATCTGCCTTGGCAGACAAAATAAGTCGTGG
ACGCGAGTTAGCGCTGTTGGCAATAGAACAAGAAGAACAAGGAAACATGG
GTGCCGCCGAAGCGGGGTACATGAAGGCATTAGGTCTTCTTGTTCCAGCT
TCTAAGGAGCTTGATATCGGATCCGAACTTAGTCGCAATGCGCGCATGGC
AATGAAGGCCAAGGTGCAACGTGAAGCTTCTGCGATGCTCGACAGGTGTG
AGCAATTACGCCTCTTCCTCAAGGCGACAGCACCTAGTGTACCAACTGAT
GTTCCAGACATGCCAAAAGTAGGAAACTCATCCTCTCGATCGAGAGGGCC
ACGTAACAAAAGTCCGCTTCGGAAAACGCGAACAAGCTTGGACGAGGACC
CGATATCTCCAAATTCTGCGGTAATGCCCCCACGAGCCAAAACGAAGAAG
TCCAAGGTTAAGCCTCAGATATACATTCCGCCTCCGCCTCCTCCAGCATT
CCAGGATAATCCACGAGAGCTTTTCCAGAGAATTGAAGATCGCAAGAACG
TGCTTTCAGCTGCCTCCGTGGCGTTCCCCTCCTCATCTGATACTCTGATC
AAAGAAGGGAAAGCCGTACATTCAAGGACTCGAGAAACGCATGCGAAGTG
CTTCATGTGCAATGAAACCGCCCATCTGAGCACCCCATGCAATCATGAGT
TTTGCTCGAATTGTGGTAATCAAGCTGTGTCTGTTTTCGGAAAGTGTCCT
GTACCGGGATGCACCACTCAGCTTACCACGGAGTCGTTCAGTCACATTTT
GCCGAAGAACGTACATCCCGGAAGTCGAAGGTAG

Coding sequence (CDS) from alignment at tig00000075_pilon:364982..366715+

>Ggra9199.t2 ID=Ggra9199.t2|Name=Ggra9199.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1734bp|location=Sequence derived from alignment at tig00000075_pilon:364982..366715+ (Gracilaria gracilis GNS1m male)
ATGTTACGTTTCGCAAAACTCCGCCGGGGCGGAAGCTCCGACGTTCAACT
GCCACCATTTGACCCTGAATCCCATCCGCCAGGGCACGCAACCGCAAGAA
TGGATCCCCCTGCACAAGACGGAAAGCGGTCTGTGGAAGTTTCCGGTGCA
AAGATGTCCCTTCGATCACTATTCAAGCAAAGACCTCGACAGTCCCGAAA
ACAGTCTGCCGATGAAGTCTCTGTACCGTCAAGTATCAATTCAACATCTC
CACCTTCGGCCTCTGCCTCTCAAGTGCCAAGCGCCGAATCCATTGTACCA
ACAATGACTCCTGAAGAGAAGCGTGCTAAGGAAGCTCGTCGTAAAGCGCG
TCGTGCCGAGCGGGAGCGTAAAGAACGTGAATGGAATGAAGAGAATCGTG
AGCGTCGCAACCAAAGCATTATCACTGGGGTTTCGTTCGACCCGTTGCCA
CCTCTCTCTGGTTTCGACTCTGCTTCAGAAGATGAGCGCGAGAGGCCACC
AAAACAATCCCAGACTGATGATTTTGAGCGACGAGGGTCTGGAACAAGCT
CAATGCGGACTTCCCAAGAAGCCCCACACCTCGATATTGCGGCTGCCACA
CTGCCAAGAAGCCATACTGACGACGCGAAACTAGCGGAGATGTTTGGAGC
TCAAGCGCTTTTGACGGCTCCTCAACCGGCTAAGCGGTCAACCCTGCCTT
CAGCACCTGCCGAGGATGCCAATACTGGATACGCCTCTCCAGGGCTTAAT
GAAAGTGCGCCAAAGCCACCGCAAAACTCTTTCCCACAAGCGAGTGATTT
GATACGGCCTTCGAAGCAGCCAGCTCCCATCGGATGGGGTGATGCATATG
ATACCGTGCCTTCACAGCCGCTTTACGGCACACCTTCTCATCTAGTCCAA
AGAGGACCGACAGCCATTGAATCTGCCTTGGCAGACAAAATAAGTCGTGG
ACGCGAGTTAGCGCTGTTGGCAATAGAACAAGAAGAACAAGGAAACATGG
GTGCCGCCGAAGCGGGGTACATGAAGGCATTAGGTCTTCTTGTTCCAGCT
TCTAAGGAGCTTGATATCGGATCCGAACTTAGTCGCAATGCGCGCATGGC
AATGAAGGCCAAGGTGCAACGTGAAGCTTCTGCGATGCTCGACAGGTGTG
AGCAATTACGCCTCTTCCTCAAGGCGACAGCACCTAGTGTACCAACTGAT
GTTCCAGACATGCCAAAAGTAGGAAACTCATCCTCTCGATCGAGAGGGCC
ACGTAACAAAAGTCCGCTTCGGAAAACGCGAACAAGCTTGGACGAGGACC
CGATATCTCCAAATTCTGCGGTAATGCCCCCACGAGCCAAAACGAAGAAG
TCCAAGGTTAAGCCTCAGATATACATTCCGCCTCCGCCTCCTCCAGCATT
CCAGGATAATCCACGAGAGCTTTTCCAGAGAATTGAAGATCGCAAGAACG
TGCTTTCAGCTGCCTCCGTGGCGTTCCCCTCCTCATCTGATACTCTGATC
AAAGAAGGGAAAGCCGTACATTCAAGGACTCGAGAAACGCATGCGAAGTG
CTTCATGTGCAATGAAACCGCCCATCTGAGCACCCCATGCAATCATGAGT
TTTGCTCGAATTGTGGTAATCAAGCTGTGTCTGTTTTCGGAAAGTGTCCT
GTACCGGGATGCACCACTCAGCTTACCACGGAGTCGTTCAGTCACATTTT
GCCGAAGAACGTACATCCCGGAAGTCGAAGGTAG