Ggra9198.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9198.t1
Unique NameGgra9198.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:362612..363306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707875.1
PFAMsPeptidase_M76
Max annot lvl2759|Eukaryota
KEGG koko:K12492,ko:K18156
KEGG Pathwayko04144,map04144
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
Evalue1.08e-63
EggNOG OGsKOG3314@1|root,KOG3314@2759|Eukaryota
Descriptionmetalloendopeptidase activity
COG categoryE
BRITEko00000,ko00001,ko01000,ko03029,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9198Ggra9198Gracilaria gracilis GNS1m malegenetig00000075_pilon 362612..363306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9198.t1Ggra9198.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 362612..363306 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9198.t1.stop1Ggra9198.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 362612..362614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9198.t1.CDS1Ggra9198.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 362612..362683 -
Ggra9198.t1.CDS2Ggra9198.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 362765..363173 -
Ggra9198.t1.CDS3Ggra9198.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000075_pilon 363242..363306 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9198.t1.exon1Ggra9198.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 362612..362683 -
Ggra9198.t1.exon2Ggra9198.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 362765..363173 -
Ggra9198.t1.exon3Ggra9198.t1.exon3Gracilaria gracilis GNS1m maleexontig00000075_pilon 363242..363306 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9198.t1.intron1Ggra9198.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 362684..362764 -
Ggra9198.t1.intron2Ggra9198.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000075_pilon 363174..363241 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9198.t1.start1Ggra9198.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 363304..363306 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9198.t1 ID=Ggra9198.t1|Name=Ggra9198.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=182bp
MGLSEEAEMARCQKFRDEAFKSHPSVRFMFKHLKRGGCELGPERVICKRC
DGQLAGGFQDDGGILLCSNHLTTQEHASNTLVHEAVHAFDQCRAKIDWAN
CVHHACSEIRAAALSGDCSFGREVFLRRNFGFAKQFQRCVKRRAELSVSL
NPFCQGVATKLAVQQAWDACFNDTAPFEKFP*
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spliced messenger RNA

>Ggra9198.t1 ID=Ggra9198.t1|Name=Ggra9198.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00000075_pilon:362612..363306- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCTTTCTGAGGAAGCGGAGATGGCTCGATGCCAAAAGTTTCGAGA
CGAGGCATTCAAAAGCCATCCATCAGTTCGCTTCATGTTCAAGCATTTGA
AACGAGGCGGTTGCGAACTCGGCCCAGAAAGAGTCATATGCAAGAGGTGT
GACGGACAGCTAGCCGGCGGGTTTCAAGATGACGGCGGCATCCTTCTCTG
TTCCAACCACCTCACAACGCAAGAGCACGCCTCGAACACACTGGTACATG
AGGCAGTTCATGCATTCGACCAATGCAGAGCGAAGATTGACTGGGCAAAT
TGCGTGCATCATGCCTGCAGCGAGATTCGAGCTGCAGCGCTCTCAGGTGA
TTGTAGTTTCGGGCGTGAAGTGTTTCTGCGACGAAACTTTGGCTTCGCCA
AACAGTTTCAACGGTGCGTCAAGCGTCGAGCCGAGCTTTCAGTGTCGCTG
AATCCGTTTTGCCAAGGAGTAGCGACAAAATTAGCTGTGCAGCAAGCATG
GGACGCATGCTTTAATGATACAGCACCTTTCGAAAAGTTCCCATGA
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protein sequence of Ggra9198.t1

>Ggra9198.t1 ID=Ggra9198.t1|Name=Ggra9198.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=182bp
MGLSEEAEMARCQKFRDEAFKSHPSVRFMFKHLKRGGCELGPERVICKRC
DGQLAGGFQDDGGILLCSNHLTTQEHASNTLVHEAVHAFDQCRAKIDWAN
CVHHACSEIRAAALSGDCSFGREVFLRRNFGFAKQFQRCVKRRAELSVSL
NPFCQGVATKLAVQQAWDACFNDTAPFEKFP*
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mRNA from alignment at tig00000075_pilon:362612..363306-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9198.t1 ID=Ggra9198.t1|Name=Ggra9198.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=695bp|location=Sequence derived from alignment at tig00000075_pilon:362612..363306- (Gracilaria gracilis GNS1m male)
ATGGGTCTTTCTGAGGAAGCGGAGATGGCTCGATGCCAAAAGTTTCGAGA
CGAGGCATTCAAAAGGTACTTGCAAATGCATTAGGCGTATACCCTGATTC
CACGAAAGAACTACACTAACCACATACCCACAGCCATCCATCAGTTCGCT
TCATGTTCAAGCATTTGAAACGAGGCGGTTGCGAACTCGGCCCAGAAAGA
GTCATATGCAAGAGGTGTGACGGACAGCTAGCCGGCGGGTTTCAAGATGA
CGGCGGCATCCTTCTCTGTTCCAACCACCTCACAACGCAAGAGCACGCCT
CGAACACACTGGTACATGAGGCAGTTCATGCATTCGACCAATGCAGAGCG
AAGATTGACTGGGCAAATTGCGTGCATCATGCCTGCAGCGAGATTCGAGC
TGCAGCGCTCTCAGGTGATTGTAGTTTCGGGCGTGAAGTGTTTCTGCGAC
GAAACTTTGGCTTCGCCAAACAGTTTCAACGGTGCGTCAAGCGTCGAGCC
GAGCTTTCAGTGTCGCTGAATCCGTTTTGCCAAGGAGTAGCGGTAAGTTG
TATTTAAACAGACACACGATTCACGAACTAGCAAGACGATGTAAGAAGGC
TAACAATCAAACTGTGCTCATAGACAAAATTAGCTGTGCAGCAAGCATGG
GACGCATGCTTTAATGATACAGCACCTTTCGAAAAGTTCCCATGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:362612..363306-

>Ggra9198.t1 ID=Ggra9198.t1|Name=Ggra9198.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=546bp|location=Sequence derived from alignment at tig00000075_pilon:362612..363306- (Gracilaria gracilis GNS1m male)
ATGGGTCTTTCTGAGGAAGCGGAGATGGCTCGATGCCAAAAGTTTCGAGA
CGAGGCATTCAAAAGCCATCCATCAGTTCGCTTCATGTTCAAGCATTTGA
AACGAGGCGGTTGCGAACTCGGCCCAGAAAGAGTCATATGCAAGAGGTGT
GACGGACAGCTAGCCGGCGGGTTTCAAGATGACGGCGGCATCCTTCTCTG
TTCCAACCACCTCACAACGCAAGAGCACGCCTCGAACACACTGGTACATG
AGGCAGTTCATGCATTCGACCAATGCAGAGCGAAGATTGACTGGGCAAAT
TGCGTGCATCATGCCTGCAGCGAGATTCGAGCTGCAGCGCTCTCAGGTGA
TTGTAGTTTCGGGCGTGAAGTGTTTCTGCGACGAAACTTTGGCTTCGCCA
AACAGTTTCAACGGTGCGTCAAGCGTCGAGCCGAGCTTTCAGTGTCGCTG
AATCCGTTTTGCCAAGGAGTAGCGACAAAATTAGCTGTGCAGCAAGCATG
GGACGCATGCTTTAATGATACAGCACCTTTCGAAAAGTTCCCATGA
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