Ggra9196.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9196.t1
Unique NameGgra9196.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length441
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:359111..360433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMK011CT
PFAMsDHQ_synthase
Max annot lvl2759|Eukaryota
KEGG rclassRC00847
KEGG koko:K01735
KEGG ReactionR03083
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
GOsGO:0003674,GO:0003824,GO:0003856,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0012505,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019632,GO:0019752,GO:0031410,GO:0031982,GO:0031984,GO:0032787,GO:0033587,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044431,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:0097708,GO:0098791,GO:1901576,GO:1901615,GO:1901617
Evalue5.91e-168
EggNOG OGsCOG0169@1|root,KOG0692@2759|Eukaryota
EC4.2.3.4
Descriptionshikimate 3-dehydrogenase (NADP ) activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9196Ggra9196Gracilaria gracilis GNS1m malegenetig00000075_pilon 359111..360433 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9196.t1.stop1Ggra9196.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 359111..359113 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9196.t1.CDS1Ggra9196.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 359111..360433 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9196.t1.exon1Ggra9196.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 359111..360433 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9196.t1.start1Ggra9196.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 360431..360433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9196.t1Ggra9196.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 359111..360433 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9196.t1 ID=Ggra9196.t1|Name=Ggra9196.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp
MRFNHPSFIAPLPTAAAKRTFFAPSQRPSCLQPTVRRRIRRFSTPVIPIC
AMTAAKDTAQRDVTLYVDAPSRKYPILFAEHVLSNPNTFKPYIHGDKVLI
VTNTTVGPLYLQRVRDAIQALGVSVFDIILPDGEEYKSLQYVSAIWDVCM
EHRLDRKSTMIALGGGVVGDTTGFAAASFVRGIPFIQVPTTLLAVVDSSV
GGKTGINHPMGKNMIGAFYQPHAVIVDSTVLHTLDDRQLAAGVAEIIKYG
IIRDWRFFEWCERNVHRLINRDPEALQYAMVQSCKYKADIVGEDERESGV
RAILNLGHTFGHAIEASMGYGNWLHGEAIAAGMVMACEMSQRLGWISKDV
TQRVEAILVRATLPIRPPPSVTLEKFMTYMSVDKKVEAGVLRLILLKEPG
NAIVTADFPESVLFDTIMYYQQLFKENPGTYESETLGLPQ*
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spliced messenger RNA

>Ggra9196.t1 ID=Ggra9196.t1|Name=Ggra9196.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000075_pilon:359111..360433- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTTCAACCATCCCTCCTTCATCGCGCCGCTTCCGACAGCCGCTGC
GAAGCGCACCTTCTTCGCGCCGTCGCAGCGACCTAGCTGCCTGCAACCAA
CGGTGCGACGTCGTATACGTCGCTTTAGCACGCCTGTTATCCCAATCTGC
GCCATGACGGCTGCCAAGGATACCGCTCAACGTGACGTTACGCTTTATGT
TGACGCCCCTTCTAGGAAGTATCCCATCCTGTTTGCAGAGCACGTGCTTT
CGAATCCAAACACTTTCAAGCCGTATATTCACGGCGATAAGGTGCTCATC
GTCACTAATACTACCGTCGGTCCTCTTTATCTGCAGCGCGTGCGCGACGC
TATTCAAGCGCTGGGCGTCTCCGTGTTCGATATCATTTTGCCTGATGGCG
AGGAGTACAAGAGCTTGCAGTATGTGTCCGCCATTTGGGATGTTTGCATG
GAGCACCGCTTGGACCGAAAGAGCACCATGATAGCGCTTGGCGGCGGGGT
TGTTGGCGATACTACTGGATTCGCAGCTGCTTCTTTTGTCCGTGGAATTC
CATTTATTCAGGTTCCTACTACCTTGCTTGCCGTCGTCGACTCTTCGGTT
GGTGGAAAGACTGGCATTAACCACCCCATGGGCAAGAATATGATTGGTGC
CTTTTATCAACCTCACGCCGTTATTGTTGATTCCACCGTGTTGCACACTC
TTGATGACCGCCAACTTGCAGCGGGCGTTGCGGAGATTATCAAGTATGGC
ATCATTAGAGACTGGCGTTTCTTCGAATGGTGTGAACGAAATGTGCACCG
TTTGATAAATAGGGACCCCGAAGCTTTGCAATATGCCATGGTCCAAAGCT
GTAAATACAAGGCAGATATTGTTGGTGAGGATGAGAGAGAAAGTGGAGTC
AGAGCCATTCTTAACCTCGGTCACACGTTTGGTCACGCCATTGAAGCCAG
CATGGGATATGGTAACTGGCTTCATGGTGAAGCTATTGCTGCTGGTATGG
TCATGGCGTGTGAGATGAGTCAAAGATTAGGCTGGATTTCAAAAGATGTC
ACACAACGGGTGGAAGCCATTCTTGTTCGGGCTACCTTACCAATTCGCCC
GCCTCCAAGTGTTACTTTGGAAAAGTTCATGACCTACATGTCTGTTGATA
AGAAGGTTGAAGCCGGCGTTTTAAGACTCATTTTGTTGAAGGAACCGGGC
AACGCTATCGTCACTGCTGACTTTCCAGAGAGCGTTTTGTTTGATACCAT
CATGTATTATCAACAGCTGTTCAAAGAAAACCCCGGAACTTACGAAAGTG
AAACGCTTGGCTTACCCCAGTAA
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protein sequence of Ggra9196.t1

>Ggra9196.t1 ID=Ggra9196.t1|Name=Ggra9196.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=441bp
MRFNHPSFIAPLPTAAAKRTFFAPSQRPSCLQPTVRRRIRRFSTPVIPIC
AMTAAKDTAQRDVTLYVDAPSRKYPILFAEHVLSNPNTFKPYIHGDKVLI
VTNTTVGPLYLQRVRDAIQALGVSVFDIILPDGEEYKSLQYVSAIWDVCM
EHRLDRKSTMIALGGGVVGDTTGFAAASFVRGIPFIQVPTTLLAVVDSSV
GGKTGINHPMGKNMIGAFYQPHAVIVDSTVLHTLDDRQLAAGVAEIIKYG
IIRDWRFFEWCERNVHRLINRDPEALQYAMVQSCKYKADIVGEDERESGV
RAILNLGHTFGHAIEASMGYGNWLHGEAIAAGMVMACEMSQRLGWISKDV
TQRVEAILVRATLPIRPPPSVTLEKFMTYMSVDKKVEAGVLRLILLKEPG
NAIVTADFPESVLFDTIMYYQQLFKENPGTYESETLGLPQ*
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mRNA from alignment at tig00000075_pilon:359111..360433-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9196.t1 ID=Ggra9196.t1|Name=Ggra9196.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000075_pilon:359111..360433- (Gracilaria gracilis GNS1m male)
ATGCGTTTCAACCATCCCTCCTTCATCGCGCCGCTTCCGACAGCCGCTGC
GAAGCGCACCTTCTTCGCGCCGTCGCAGCGACCTAGCTGCCTGCAACCAA
CGGTGCGACGTCGTATACGTCGCTTTAGCACGCCTGTTATCCCAATCTGC
GCCATGACGGCTGCCAAGGATACCGCTCAACGTGACGTTACGCTTTATGT
TGACGCCCCTTCTAGGAAGTATCCCATCCTGTTTGCAGAGCACGTGCTTT
CGAATCCAAACACTTTCAAGCCGTATATTCACGGCGATAAGGTGCTCATC
GTCACTAATACTACCGTCGGTCCTCTTTATCTGCAGCGCGTGCGCGACGC
TATTCAAGCGCTGGGCGTCTCCGTGTTCGATATCATTTTGCCTGATGGCG
AGGAGTACAAGAGCTTGCAGTATGTGTCCGCCATTTGGGATGTTTGCATG
GAGCACCGCTTGGACCGAAAGAGCACCATGATAGCGCTTGGCGGCGGGGT
TGTTGGCGATACTACTGGATTCGCAGCTGCTTCTTTTGTCCGTGGAATTC
CATTTATTCAGGTTCCTACTACCTTGCTTGCCGTCGTCGACTCTTCGGTT
GGTGGAAAGACTGGCATTAACCACCCCATGGGCAAGAATATGATTGGTGC
CTTTTATCAACCTCACGCCGTTATTGTTGATTCCACCGTGTTGCACACTC
TTGATGACCGCCAACTTGCAGCGGGCGTTGCGGAGATTATCAAGTATGGC
ATCATTAGAGACTGGCGTTTCTTCGAATGGTGTGAACGAAATGTGCACCG
TTTGATAAATAGGGACCCCGAAGCTTTGCAATATGCCATGGTCCAAAGCT
GTAAATACAAGGCAGATATTGTTGGTGAGGATGAGAGAGAAAGTGGAGTC
AGAGCCATTCTTAACCTCGGTCACACGTTTGGTCACGCCATTGAAGCCAG
CATGGGATATGGTAACTGGCTTCATGGTGAAGCTATTGCTGCTGGTATGG
TCATGGCGTGTGAGATGAGTCAAAGATTAGGCTGGATTTCAAAAGATGTC
ACACAACGGGTGGAAGCCATTCTTGTTCGGGCTACCTTACCAATTCGCCC
GCCTCCAAGTGTTACTTTGGAAAAGTTCATGACCTACATGTCTGTTGATA
AGAAGGTTGAAGCCGGCGTTTTAAGACTCATTTTGTTGAAGGAACCGGGC
AACGCTATCGTCACTGCTGACTTTCCAGAGAGCGTTTTGTTTGATACCAT
CATGTATTATCAACAGCTGTTCAAAGAAAACCCCGGAACTTACGAAAGTG
AAACGCTTGGCTTACCCCAGTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:359111..360433-

>Ggra9196.t1 ID=Ggra9196.t1|Name=Ggra9196.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1323bp|location=Sequence derived from alignment at tig00000075_pilon:359111..360433- (Gracilaria gracilis GNS1m male)
ATGCGTTTCAACCATCCCTCCTTCATCGCGCCGCTTCCGACAGCCGCTGC
GAAGCGCACCTTCTTCGCGCCGTCGCAGCGACCTAGCTGCCTGCAACCAA
CGGTGCGACGTCGTATACGTCGCTTTAGCACGCCTGTTATCCCAATCTGC
GCCATGACGGCTGCCAAGGATACCGCTCAACGTGACGTTACGCTTTATGT
TGACGCCCCTTCTAGGAAGTATCCCATCCTGTTTGCAGAGCACGTGCTTT
CGAATCCAAACACTTTCAAGCCGTATATTCACGGCGATAAGGTGCTCATC
GTCACTAATACTACCGTCGGTCCTCTTTATCTGCAGCGCGTGCGCGACGC
TATTCAAGCGCTGGGCGTCTCCGTGTTCGATATCATTTTGCCTGATGGCG
AGGAGTACAAGAGCTTGCAGTATGTGTCCGCCATTTGGGATGTTTGCATG
GAGCACCGCTTGGACCGAAAGAGCACCATGATAGCGCTTGGCGGCGGGGT
TGTTGGCGATACTACTGGATTCGCAGCTGCTTCTTTTGTCCGTGGAATTC
CATTTATTCAGGTTCCTACTACCTTGCTTGCCGTCGTCGACTCTTCGGTT
GGTGGAAAGACTGGCATTAACCACCCCATGGGCAAGAATATGATTGGTGC
CTTTTATCAACCTCACGCCGTTATTGTTGATTCCACCGTGTTGCACACTC
TTGATGACCGCCAACTTGCAGCGGGCGTTGCGGAGATTATCAAGTATGGC
ATCATTAGAGACTGGCGTTTCTTCGAATGGTGTGAACGAAATGTGCACCG
TTTGATAAATAGGGACCCCGAAGCTTTGCAATATGCCATGGTCCAAAGCT
GTAAATACAAGGCAGATATTGTTGGTGAGGATGAGAGAGAAAGTGGAGTC
AGAGCCATTCTTAACCTCGGTCACACGTTTGGTCACGCCATTGAAGCCAG
CATGGGATATGGTAACTGGCTTCATGGTGAAGCTATTGCTGCTGGTATGG
TCATGGCGTGTGAGATGAGTCAAAGATTAGGCTGGATTTCAAAAGATGTC
ACACAACGGGTGGAAGCCATTCTTGTTCGGGCTACCTTACCAATTCGCCC
GCCTCCAAGTGTTACTTTGGAAAAGTTCATGACCTACATGTCTGTTGATA
AGAAGGTTGAAGCCGGCGTTTTAAGACTCATTTTGTTGAAGGAACCGGGC
AACGCTATCGTCACTGCTGACTTTCCAGAGAGCGTTTTGTTTGATACCAT
CATGTATTATCAACAGCTGTTCAAAGAAAACCCCGGAACTTACGAAAGTG
AAACGCTTGGCTTACCCCAGTAA
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