Ggra9192.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9192.t1
Unique NameGgra9192.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length502
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:344507..346012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog575540.Isop_1668
PFAMsCeramidase_alk
Max annot lvl203682|Planctomycetes
Evalue1.5e-67
EggNOG OGsCOG3356@1|root,COG3356@2|Bacteria,2IX5S@203682|Planctomycetes
DescriptionNeutral/alkaline non-lysosomal ceramidase, N-terminal
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9192Ggra9192Gracilaria gracilis GNS1m malegenetig00000075_pilon 344507..346012 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9192.t1.start1Ggra9192.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 344507..344509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9192.t1.CDS1Ggra9192.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 344507..346012 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9192.t1.exon1Ggra9192.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 344507..346012 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9192.t1.stop1Ggra9192.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 346010..346012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9192.t1Ggra9192.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 344507..346012 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9192.t1 ID=Ggra9192.t1|Name=Ggra9192.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=502bp
MNRSGQRRLYRKQEKSMRKELFLRCKRDALFFFRNLWVRNKVLFFSTVAA
LVLCLVLLKGHSAGEENGERTWTISVSRVDITPSEKVWLSGFASRNRTAE
SIQPLDPDFPLFVRAIAIRNQTGRVKSLPLVIVSLDVIGFDQEFSATILR
DVEKEYGISRDRLRLCATHTHSGPVVGRNLAPLVPPNEVEHEKVLRYTSS
LTRAVLKAIRECIEGRQETVSVSFSEATVPLATNRRQVLEKGFHGERGTT
EDQVPVMWFAKGSRIVAGVFGVAAHATILTSSYRYSGDYAGYAAKKLEEE
TGGMWFFLAGCGGDQNIYPRGSLQLLQHHGSNLVNSILQVAHRGGTEVSS
AAVATDGYTKLYFAKRYSAYELSVRGRSKNAVERRAADLLQAEGIGSDGK
TKAVYPFPLGVWRLGDIKIVFMGGEPTVGYCHELKKAGATWIVGYCQDVM
GYVGTADVIREGGREGGERAAWYYGLPSAWSVDTERRIMNDAYSMLTSLK
L*
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spliced messenger RNA

>Ggra9192.t1 ID=Ggra9192.t1|Name=Ggra9192.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1506bp|location=Sequence derived from alignment at tig00000075_pilon:344507..346012+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCGTTCTGGTCAAAGAAGACTGTATCGAAAGCAAGAAAAGTCGAT
GAGAAAGGAGCTTTTCCTTCGCTGCAAACGTGATGCACTGTTCTTCTTTC
GAAATCTGTGGGTGCGGAACAAAGTACTATTCTTTTCCACGGTAGCCGCC
TTAGTTCTATGCCTTGTACTACTTAAGGGTCATAGTGCTGGCGAAGAAAA
TGGAGAAAGAACATGGACTATAAGCGTTTCGCGAGTTGATATCACCCCAT
CAGAAAAAGTTTGGCTTTCAGGCTTTGCATCTCGCAACCGGACAGCAGAA
AGTATTCAGCCTTTAGATCCTGATTTCCCCCTCTTTGTCCGAGCCATAGC
TATTCGCAACCAAACAGGCCGCGTAAAATCGCTACCACTCGTGATTGTAT
CCCTAGACGTTATTGGCTTCGATCAAGAATTCTCTGCGACTATTTTGCGG
GACGTGGAGAAGGAGTACGGAATTTCTCGAGATCGTCTCCGATTGTGTGC
CACCCATACGCATTCCGGTCCAGTAGTGGGGAGAAATCTCGCCCCTCTTG
TTCCCCCTAATGAGGTAGAGCATGAAAAGGTGCTGAGATACACAAGCTCG
CTAACTCGAGCTGTACTAAAAGCCATAAGGGAATGCATCGAAGGTCGACA
GGAAACTGTCTCTGTATCATTTTCCGAAGCCACAGTGCCACTCGCTACAA
ATCGACGCCAGGTGTTAGAGAAGGGGTTCCATGGAGAGAGAGGAACGACG
GAGGATCAAGTTCCTGTTATGTGGTTTGCAAAAGGGAGTAGAATTGTTGC
GGGCGTATTCGGAGTGGCCGCACACGCGACAATTTTGACATCGAGCTACC
GATATTCTGGAGATTACGCTGGCTACGCGGCGAAAAAGCTGGAGGAAGAG
ACTGGAGGGATGTGGTTCTTCCTTGCTGGATGCGGTGGTGACCAAAACAT
ATACCCACGCGGAAGTCTGCAACTACTGCAACACCATGGATCAAACTTGG
TTAACAGTATTCTGCAAGTTGCTCACAGGGGAGGTACAGAGGTTAGCTCC
GCGGCTGTTGCAACCGATGGATACACAAAGCTGTACTTTGCAAAGCGATA
CAGCGCATATGAGCTTTCCGTTCGCGGGCGATCCAAAAACGCTGTAGAAA
GGCGTGCTGCGGATCTACTGCAGGCCGAGGGGATCGGTAGTGATGGAAAG
ACTAAAGCAGTTTATCCGTTCCCACTCGGTGTATGGCGACTGGGTGATAT
TAAAATTGTGTTCATGGGAGGTGAGCCGACAGTAGGGTATTGCCATGAGC
TGAAGAAAGCTGGGGCCACGTGGATAGTCGGGTATTGCCAGGATGTTATG
GGCTATGTCGGAACTGCCGACGTGATAAGAGAAGGCGGGAGGGAGGGAGG
CGAACGAGCCGCGTGGTATTATGGTCTACCATCAGCTTGGTCGGTGGATA
CAGAACGTCGCATAATGAACGACGCATATTCGATGCTTACCAGTCTTAAG
CTCTGA
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protein sequence of Ggra9192.t1

>Ggra9192.t1 ID=Ggra9192.t1|Name=Ggra9192.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=502bp
MNRSGQRRLYRKQEKSMRKELFLRCKRDALFFFRNLWVRNKVLFFSTVAA
LVLCLVLLKGHSAGEENGERTWTISVSRVDITPSEKVWLSGFASRNRTAE
SIQPLDPDFPLFVRAIAIRNQTGRVKSLPLVIVSLDVIGFDQEFSATILR
DVEKEYGISRDRLRLCATHTHSGPVVGRNLAPLVPPNEVEHEKVLRYTSS
LTRAVLKAIRECIEGRQETVSVSFSEATVPLATNRRQVLEKGFHGERGTT
EDQVPVMWFAKGSRIVAGVFGVAAHATILTSSYRYSGDYAGYAAKKLEEE
TGGMWFFLAGCGGDQNIYPRGSLQLLQHHGSNLVNSILQVAHRGGTEVSS
AAVATDGYTKLYFAKRYSAYELSVRGRSKNAVERRAADLLQAEGIGSDGK
TKAVYPFPLGVWRLGDIKIVFMGGEPTVGYCHELKKAGATWIVGYCQDVM
GYVGTADVIREGGREGGERAAWYYGLPSAWSVDTERRIMNDAYSMLTSLK
L*
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mRNA from alignment at tig00000075_pilon:344507..346012+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9192.t1 ID=Ggra9192.t1|Name=Ggra9192.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1506bp|location=Sequence derived from alignment at tig00000075_pilon:344507..346012+ (Gracilaria gracilis GNS1m male)
ATGAACCGTTCTGGTCAAAGAAGACTGTATCGAAAGCAAGAAAAGTCGAT
GAGAAAGGAGCTTTTCCTTCGCTGCAAACGTGATGCACTGTTCTTCTTTC
GAAATCTGTGGGTGCGGAACAAAGTACTATTCTTTTCCACGGTAGCCGCC
TTAGTTCTATGCCTTGTACTACTTAAGGGTCATAGTGCTGGCGAAGAAAA
TGGAGAAAGAACATGGACTATAAGCGTTTCGCGAGTTGATATCACCCCAT
CAGAAAAAGTTTGGCTTTCAGGCTTTGCATCTCGCAACCGGACAGCAGAA
AGTATTCAGCCTTTAGATCCTGATTTCCCCCTCTTTGTCCGAGCCATAGC
TATTCGCAACCAAACAGGCCGCGTAAAATCGCTACCACTCGTGATTGTAT
CCCTAGACGTTATTGGCTTCGATCAAGAATTCTCTGCGACTATTTTGCGG
GACGTGGAGAAGGAGTACGGAATTTCTCGAGATCGTCTCCGATTGTGTGC
CACCCATACGCATTCCGGTCCAGTAGTGGGGAGAAATCTCGCCCCTCTTG
TTCCCCCTAATGAGGTAGAGCATGAAAAGGTGCTGAGATACACAAGCTCG
CTAACTCGAGCTGTACTAAAAGCCATAAGGGAATGCATCGAAGGTCGACA
GGAAACTGTCTCTGTATCATTTTCCGAAGCCACAGTGCCACTCGCTACAA
ATCGACGCCAGGTGTTAGAGAAGGGGTTCCATGGAGAGAGAGGAACGACG
GAGGATCAAGTTCCTGTTATGTGGTTTGCAAAAGGGAGTAGAATTGTTGC
GGGCGTATTCGGAGTGGCCGCACACGCGACAATTTTGACATCGAGCTACC
GATATTCTGGAGATTACGCTGGCTACGCGGCGAAAAAGCTGGAGGAAGAG
ACTGGAGGGATGTGGTTCTTCCTTGCTGGATGCGGTGGTGACCAAAACAT
ATACCCACGCGGAAGTCTGCAACTACTGCAACACCATGGATCAAACTTGG
TTAACAGTATTCTGCAAGTTGCTCACAGGGGAGGTACAGAGGTTAGCTCC
GCGGCTGTTGCAACCGATGGATACACAAAGCTGTACTTTGCAAAGCGATA
CAGCGCATATGAGCTTTCCGTTCGCGGGCGATCCAAAAACGCTGTAGAAA
GGCGTGCTGCGGATCTACTGCAGGCCGAGGGGATCGGTAGTGATGGAAAG
ACTAAAGCAGTTTATCCGTTCCCACTCGGTGTATGGCGACTGGGTGATAT
TAAAATTGTGTTCATGGGAGGTGAGCCGACAGTAGGGTATTGCCATGAGC
TGAAGAAAGCTGGGGCCACGTGGATAGTCGGGTATTGCCAGGATGTTATG
GGCTATGTCGGAACTGCCGACGTGATAAGAGAAGGCGGGAGGGAGGGAGG
CGAACGAGCCGCGTGGTATTATGGTCTACCATCAGCTTGGTCGGTGGATA
CAGAACGTCGCATAATGAACGACGCATATTCGATGCTTACCAGTCTTAAG
CTCTGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:344507..346012+

>Ggra9192.t1 ID=Ggra9192.t1|Name=Ggra9192.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1506bp|location=Sequence derived from alignment at tig00000075_pilon:344507..346012+ (Gracilaria gracilis GNS1m male)
ATGAACCGTTCTGGTCAAAGAAGACTGTATCGAAAGCAAGAAAAGTCGAT
GAGAAAGGAGCTTTTCCTTCGCTGCAAACGTGATGCACTGTTCTTCTTTC
GAAATCTGTGGGTGCGGAACAAAGTACTATTCTTTTCCACGGTAGCCGCC
TTAGTTCTATGCCTTGTACTACTTAAGGGTCATAGTGCTGGCGAAGAAAA
TGGAGAAAGAACATGGACTATAAGCGTTTCGCGAGTTGATATCACCCCAT
CAGAAAAAGTTTGGCTTTCAGGCTTTGCATCTCGCAACCGGACAGCAGAA
AGTATTCAGCCTTTAGATCCTGATTTCCCCCTCTTTGTCCGAGCCATAGC
TATTCGCAACCAAACAGGCCGCGTAAAATCGCTACCACTCGTGATTGTAT
CCCTAGACGTTATTGGCTTCGATCAAGAATTCTCTGCGACTATTTTGCGG
GACGTGGAGAAGGAGTACGGAATTTCTCGAGATCGTCTCCGATTGTGTGC
CACCCATACGCATTCCGGTCCAGTAGTGGGGAGAAATCTCGCCCCTCTTG
TTCCCCCTAATGAGGTAGAGCATGAAAAGGTGCTGAGATACACAAGCTCG
CTAACTCGAGCTGTACTAAAAGCCATAAGGGAATGCATCGAAGGTCGACA
GGAAACTGTCTCTGTATCATTTTCCGAAGCCACAGTGCCACTCGCTACAA
ATCGACGCCAGGTGTTAGAGAAGGGGTTCCATGGAGAGAGAGGAACGACG
GAGGATCAAGTTCCTGTTATGTGGTTTGCAAAAGGGAGTAGAATTGTTGC
GGGCGTATTCGGAGTGGCCGCACACGCGACAATTTTGACATCGAGCTACC
GATATTCTGGAGATTACGCTGGCTACGCGGCGAAAAAGCTGGAGGAAGAG
ACTGGAGGGATGTGGTTCTTCCTTGCTGGATGCGGTGGTGACCAAAACAT
ATACCCACGCGGAAGTCTGCAACTACTGCAACACCATGGATCAAACTTGG
TTAACAGTATTCTGCAAGTTGCTCACAGGGGAGGTACAGAGGTTAGCTCC
GCGGCTGTTGCAACCGATGGATACACAAAGCTGTACTTTGCAAAGCGATA
CAGCGCATATGAGCTTTCCGTTCGCGGGCGATCCAAAAACGCTGTAGAAA
GGCGTGCTGCGGATCTACTGCAGGCCGAGGGGATCGGTAGTGATGGAAAG
ACTAAAGCAGTTTATCCGTTCCCACTCGGTGTATGGCGACTGGGTGATAT
TAAAATTGTGTTCATGGGAGGTGAGCCGACAGTAGGGTATTGCCATGAGC
TGAAGAAAGCTGGGGCCACGTGGATAGTCGGGTATTGCCAGGATGTTATG
GGCTATGTCGGAACTGCCGACGTGATAAGAGAAGGCGGGAGGGAGGGAGG
CGAACGAGCCGCGTGGTATTATGGTCTACCATCAGCTTGGTCGGTGGATA
CAGAACGTCGCATAATGAACGACGCATATTCGATGCTTACCAGTCTTAAG
CTCTGA
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