Ggra9191.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9191.t1
Unique NameGgra9191.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length74
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:343411..343803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702969.1
Preferred nameATP15
PFAMsATP-synt_Eps
Max annot lvl2759|Eukaryota
KEGG koko:K02135,ko:K13413
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04016,ko04075,ko04626,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04016,map04075,map04626,map04714,map05010,map05012,map05016
KEGG ModuleM00158
GOsGO:0000275,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005756,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016310,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0042776,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045259,GO:0045261,GO:0045269,GO:0046034,GO:0046390,GO:0046483,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600,GO:1990542
Evalue1.8e-16
EggNOG OGsKOG3495@1|root,KOG3495@2759|Eukaryota
EC2.7.12.2
DescriptionATP synthesis coupled proton transport
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9191Ggra9191Gracilaria gracilis GNS1m malegenetig00000075_pilon 343411..343803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9191.t1Ggra9191.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 343411..343803 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9191.t1.stop1Ggra9191.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 343411..343413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9191.t1.CDS1Ggra9191.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 343411..343463 -
Ggra9191.t1.CDS2Ggra9191.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 343635..343803 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9191.t1.exon1Ggra9191.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 343411..343463 -
Ggra9191.t1.exon2Ggra9191.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 343635..343803 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9191.t1.intron1Ggra9191.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 343464..343634 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9191.t1.start1Ggra9191.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 343801..343803 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9191.t1 ID=Ggra9191.t1|Name=Ggra9191.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=74bp
MVQYWRAAGMTYLKYSTTCAELVRQALKEPIRAQVLNRAGYAMIKGDWDK
GKIVQRTLVEPGATSEVAAAVAK*
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spliced messenger RNA

>Ggra9191.t1 ID=Ggra9191.t1|Name=Ggra9191.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp|location=Sequence derived from alignment at tig00000075_pilon:343411..343803- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCAGTACTGGCGCGCGGCGGGTATGACCTACCTGAAATACTCCAC
TACATGCGCAGAACTTGTTCGCCAAGCCTTAAAGGAACCGATCCGCGCGC
AAGTTCTCAATCGTGCCGGCTATGCTATGATCAAGGGTGACTGGGATAAG
GGAAAGATCGTCCAAAGAACATTGGTTGAACCTGGTGCCACATCTGAAGT
GGCTGCTGCCGTCGCTAAGTAA
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protein sequence of Ggra9191.t1

>Ggra9191.t1 ID=Ggra9191.t1|Name=Ggra9191.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=74bp
MVQYWRAAGMTYLKYSTTCAELVRQALKEPIRAQVLNRAGYAMIKGDWDK
GKIVQRTLVEPGATSEVAAAVAK*
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mRNA from alignment at tig00000075_pilon:343411..343803-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9191.t1 ID=Ggra9191.t1|Name=Ggra9191.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp|location=Sequence derived from alignment at tig00000075_pilon:343411..343803- (Gracilaria gracilis GNS1m male)
ATGGTGCAGTACTGGCGCGCGGCGGGTATGACCTACCTGAAATACTCCAC
TACATGCGCAGAACTTGTTCGCCAAGCCTTAAAGGAACCGATCCGCGCGC
AAGTTCTCAATCGTGCCGGCTATGCTATGATCAAGGGTGACTGGGATAAG
GGAAAGATCGTCCAAAGAAGTAAGTGCTTCATTCACTGCATTCGCTCCCG
CCTACGAGCAAAGCTTTGCGATGCGGCATGCTGGCGTGTTTCATACCAAA
AAACAGAGTTCACTAACTCATGAAAACTTCATCATGCCTGCGTCCTCATC
GCATTCGTTCGCATTTGTACTTCGTCTTTTATTCTACCAGCATTGGTTGA
ACCTGGTGCCACATCTGAAGTGGCTGCTGCCGTCGCTAAGTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:343411..343803-

>Ggra9191.t1 ID=Ggra9191.t1|Name=Ggra9191.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=222bp|location=Sequence derived from alignment at tig00000075_pilon:343411..343803- (Gracilaria gracilis GNS1m male)
ATGGTGCAGTACTGGCGCGCGGCGGGTATGACCTACCTGAAATACTCCAC
TACATGCGCAGAACTTGTTCGCCAAGCCTTAAAGGAACCGATCCGCGCGC
AAGTTCTCAATCGTGCCGGCTATGCTATGATCAAGGGTGACTGGGATAAG
GGAAAGATCGTCCAAAGAACATTGGTTGAACCTGGTGCCACATCTGAAGT
GGCTGCTGCCGTCGCTAAGTAA
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