Ggra9187.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9187.t1
Unique Name	Ggra9187.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	675

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:333568..335592 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7FYF7
PFAMs	Dynamin_M,Dynamin_N,GED
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14754,ko:K17065
KEGG Pathway	ko04139,ko04214,ko04217,ko04621,ko04668,ko05162,ko05164,ko05165,map04139,map04214,map04217,map04621,map04668,map05162,map05164,map05165
GOs	GO:0000266,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0007005,GO:0008017,GO:0008092,GO:0008150,GO:0009987,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0044424,GO:0044464,GO:0048285,GO:0071840
Evalue	7.07e-60
EggNOG OGs	COG0699@1\|root,KOG0446@2759\|Eukaryota
EC	3.6.5.5
Description	mitochondrial fission
COG category	I
BRITE	ko00000,ko00001,ko01000,ko03029,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9187	Ggra9187	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 333568..335592 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9187.t1.start1	Ggra9187.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 333568..333570 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9187.t1.CDS1	Ggra9187.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 333568..335592 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9187.t1.exon1	Ggra9187.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 333568..335592 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9187.t1.stop1	Ggra9187.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 335590..335592 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9187.t1	Ggra9187.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 333568..335592 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:333568..335592+
coding sequence from alignment at tig00000075_pilon:333568..335592+

mRNA sequence

>Ggra9187.t1 ID=Ggra9187.t1|Name=Ggra9187.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=675bp
MPQVRSKFDDKYNRHLGQKLGLIEELRSELAEEKIECPGIVVVGAQSAGK
SSVLQRLTGVSFPRAENTCTRLPAIVSLQTDPSIHGTRIYVSREAAFRNA
LECDSMAVLQNRIMAMTMDVENSDVSVKNEPVYIRYIRKEGPVFSLIDLP
GITYMDPKNQKFDIHEETVSMVRQYISNPNTVILVVIPALEDFSNAEALK
IAMECDREGNRTIGVVTKCDVVSESSYFLRKMRMSGPNDIRLKLGFVAVR
NRGPGEENINIDEAERHMFSNHSLLKQLNPTQKGYMALTRKIVELQSELV
DAFIPKTKKAVRDRIQKIETELESMGKVPETEREQRSILRSTLSSVQDTM
TSLIRAEKVREKECNVAARTYEKLIAFGSKINDDLPNYLGCHYKEVVARA
VSESVGHTLPNFQADHPVLQDQVQKLLFSGLVESNVGDLINQVKAYMLSV
YEKVLASTEAGQQYPKLQIALVEKVDEILRKARREALEVTNSLIVAESSN
PFTQAADYLETIRKTRIVVQDIRHGQRNETQNSAEPSSSDGSGSESPQSE
QTQTLELYNELTASGIDQDFLQRWASSESNSPEDGHYNLQLSIYMYVRVA
LRRLFDVIPMVVRDKLIYQVHKYFYRELSEDFDDHRRLNELIQEKSNIRE
IRVTLKKRHDQLKDSLRRLELIAS*

spliced messenger RNA

>Ggra9187.t1 ID=Ggra9187.t1|Name=Ggra9187.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2025bp|location=Sequence derived from alignment at tig00000075_pilon:333568..335592+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCAAGTGCGAAGCAAGTTTGATGATAAGTACAATCGCCACCTTGG
GCAGAAACTTGGCCTTATCGAAGAACTGCGTTCTGAACTTGCTGAAGAGA
AAATCGAATGTCCTGGGATTGTCGTAGTCGGAGCTCAATCCGCCGGGAAA
TCTTCCGTCCTTCAGCGGTTAACAGGCGTATCGTTTCCAAGAGCAGAAAA
CACTTGCACTCGACTGCCGGCTATTGTGAGTCTCCAAACAGACCCAAGTA
TTCATGGCACCCGCATTTATGTTTCACGGGAAGCAGCGTTTAGGAATGCG
CTTGAGTGCGATTCTATGGCGGTGTTGCAGAACCGAATAATGGCCATGAC
GATGGATGTCGAGAATAGCGACGTTTCTGTCAAGAATGAACCTGTTTATA
TACGGTATATTCGTAAGGAAGGCCCAGTCTTCAGTTTAATTGATCTCCCA
GGCATAACGTACATGGACCCGAAGAACCAGAAATTTGATATCCACGAAGA
AACAGTTTCCATGGTTCGGCAATATATAAGTAATCCCAACACCGTAATTC
TTGTTGTTATTCCGGCTCTTGAAGACTTTTCAAATGCAGAAGCCCTCAAG
ATAGCCATGGAGTGTGACAGAGAGGGTAACCGTACAATTGGCGTCGTGAC
CAAGTGCGATGTGGTCTCTGAAAGCTCATACTTTTTGCGCAAAATGCGGA
TGTCAGGTCCGAACGATATCAGACTGAAGCTAGGTTTCGTCGCAGTGCGG
AACAGAGGACCTGGTGAAGAGAACATAAACATAGACGAGGCTGAACGACA
TATGTTTTCAAATCATTCCCTGCTGAAGCAACTCAACCCGACTCAAAAAG
GTTACATGGCTCTGACAAGAAAAATTGTCGAGCTACAAAGTGAGCTCGTG
GATGCGTTTATCCCAAAGACAAAGAAGGCGGTACGTGATAGGATTCAAAA
GATAGAGACGGAACTTGAGTCAATGGGTAAAGTGCCCGAAACTGAGCGGG
AACAGCGCAGTATTCTCAGATCTACCCTTAGCAGCGTCCAAGATACAATG
ACAAGCCTCATCCGCGCCGAAAAGGTTCGCGAAAAGGAATGCAATGTGGC
TGCTCGAACCTATGAGAAACTCATTGCGTTCGGGAGCAAAATCAACGATG
ATCTACCCAACTATTTGGGATGCCATTATAAAGAGGTAGTGGCTCGAGCT
GTTTCTGAATCGGTTGGTCATACACTTCCAAACTTTCAGGCTGACCACCC
GGTTTTGCAAGACCAGGTACAAAAGCTACTCTTCAGCGGGTTAGTAGAGA
GCAACGTCGGAGATCTCATCAATCAGGTGAAAGCGTACATGCTGTCTGTG
TACGAGAAGGTTCTGGCGTCAACTGAAGCTGGGCAGCAGTATCCAAAACT
ACAGATTGCTCTCGTTGAAAAAGTTGACGAAATCTTACGGAAGGCTAGGC
GTGAAGCTTTGGAAGTAACCAATTCCCTCATTGTCGCAGAGTCTTCTAAC
CCATTCACCCAGGCTGCCGACTACTTAGAAACCATAAGAAAGACCAGAAT
TGTTGTGCAGGATATTAGACATGGACAGAGGAATGAAACCCAAAACTCTG
CAGAGCCCAGCTCGTCAGATGGAAGCGGCTCCGAGAGCCCGCAATCAGAA
CAAACTCAGACGTTGGAGCTTTACAATGAGTTGACTGCGTCTGGGATTGA
TCAGGACTTCTTGCAACGGTGGGCCTCTTCTGAGAGCAATTCGCCAGAAG
ATGGACACTACAACCTGCAACTGTCAATCTACATGTATGTTCGTGTTGCA
TTACGACGGCTATTTGATGTGATTCCGATGGTTGTTCGGGACAAGCTGAT
TTATCAAGTGCACAAATACTTCTACCGAGAGCTTTCGGAAGACTTCGACG
ACCATCGAAGATTGAATGAGCTCATTCAGGAGAAATCAAACATCCGGGAA
ATTCGTGTTACTCTCAAGAAGCGACACGACCAACTCAAAGACTCCTTACG
ACGCTTAGAATTGATAGCGAGTTAA

protein sequence of Ggra9187.t1

>Ggra9187.t1 ID=Ggra9187.t1|Name=Ggra9187.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=675bp
MPQVRSKFDDKYNRHLGQKLGLIEELRSELAEEKIECPGIVVVGAQSAGK
SSVLQRLTGVSFPRAENTCTRLPAIVSLQTDPSIHGTRIYVSREAAFRNA
LECDSMAVLQNRIMAMTMDVENSDVSVKNEPVYIRYIRKEGPVFSLIDLP
GITYMDPKNQKFDIHEETVSMVRQYISNPNTVILVVIPALEDFSNAEALK
IAMECDREGNRTIGVVTKCDVVSESSYFLRKMRMSGPNDIRLKLGFVAVR
NRGPGEENINIDEAERHMFSNHSLLKQLNPTQKGYMALTRKIVELQSELV
DAFIPKTKKAVRDRIQKIETELESMGKVPETEREQRSILRSTLSSVQDTM
TSLIRAEKVREKECNVAARTYEKLIAFGSKINDDLPNYLGCHYKEVVARA
VSESVGHTLPNFQADHPVLQDQVQKLLFSGLVESNVGDLINQVKAYMLSV
YEKVLASTEAGQQYPKLQIALVEKVDEILRKARREALEVTNSLIVAESSN
PFTQAADYLETIRKTRIVVQDIRHGQRNETQNSAEPSSSDGSGSESPQSE
QTQTLELYNELTASGIDQDFLQRWASSESNSPEDGHYNLQLSIYMYVRVA
LRRLFDVIPMVVRDKLIYQVHKYFYRELSEDFDDHRRLNELIQEKSNIRE
IRVTLKKRHDQLKDSLRRLELIAS*

mRNA from alignment at tig00000075_pilon:333568..335592+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9187.t1 ID=Ggra9187.t1|Name=Ggra9187.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2025bp|location=Sequence derived from alignment at tig00000075_pilon:333568..335592+ (Gracilaria gracilis GNS1m male)
ATGCCTCAAGTGCGAAGCAAGTTTGATGATAAGTACAATCGCCACCTTGG
GCAGAAACTTGGCCTTATCGAAGAACTGCGTTCTGAACTTGCTGAAGAGA
AAATCGAATGTCCTGGGATTGTCGTAGTCGGAGCTCAATCCGCCGGGAAA
TCTTCCGTCCTTCAGCGGTTAACAGGCGTATCGTTTCCAAGAGCAGAAAA
CACTTGCACTCGACTGCCGGCTATTGTGAGTCTCCAAACAGACCCAAGTA
TTCATGGCACCCGCATTTATGTTTCACGGGAAGCAGCGTTTAGGAATGCG
CTTGAGTGCGATTCTATGGCGGTGTTGCAGAACCGAATAATGGCCATGAC
GATGGATGTCGAGAATAGCGACGTTTCTGTCAAGAATGAACCTGTTTATA
TACGGTATATTCGTAAGGAAGGCCCAGTCTTCAGTTTAATTGATCTCCCA
GGCATAACGTACATGGACCCGAAGAACCAGAAATTTGATATCCACGAAGA
AACAGTTTCCATGGTTCGGCAATATATAAGTAATCCCAACACCGTAATTC
TTGTTGTTATTCCGGCTCTTGAAGACTTTTCAAATGCAGAAGCCCTCAAG
ATAGCCATGGAGTGTGACAGAGAGGGTAACCGTACAATTGGCGTCGTGAC
CAAGTGCGATGTGGTCTCTGAAAGCTCATACTTTTTGCGCAAAATGCGGA
TGTCAGGTCCGAACGATATCAGACTGAAGCTAGGTTTCGTCGCAGTGCGG
AACAGAGGACCTGGTGAAGAGAACATAAACATAGACGAGGCTGAACGACA
TATGTTTTCAAATCATTCCCTGCTGAAGCAACTCAACCCGACTCAAAAAG
GTTACATGGCTCTGACAAGAAAAATTGTCGAGCTACAAAGTGAGCTCGTG
GATGCGTTTATCCCAAAGACAAAGAAGGCGGTACGTGATAGGATTCAAAA
GATAGAGACGGAACTTGAGTCAATGGGTAAAGTGCCCGAAACTGAGCGGG
AACAGCGCAGTATTCTCAGATCTACCCTTAGCAGCGTCCAAGATACAATG
ACAAGCCTCATCCGCGCCGAAAAGGTTCGCGAAAAGGAATGCAATGTGGC
TGCTCGAACCTATGAGAAACTCATTGCGTTCGGGAGCAAAATCAACGATG
ATCTACCCAACTATTTGGGATGCCATTATAAAGAGGTAGTGGCTCGAGCT
GTTTCTGAATCGGTTGGTCATACACTTCCAAACTTTCAGGCTGACCACCC
GGTTTTGCAAGACCAGGTACAAAAGCTACTCTTCAGCGGGTTAGTAGAGA
GCAACGTCGGAGATCTCATCAATCAGGTGAAAGCGTACATGCTGTCTGTG
TACGAGAAGGTTCTGGCGTCAACTGAAGCTGGGCAGCAGTATCCAAAACT
ACAGATTGCTCTCGTTGAAAAAGTTGACGAAATCTTACGGAAGGCTAGGC
GTGAAGCTTTGGAAGTAACCAATTCCCTCATTGTCGCAGAGTCTTCTAAC
CCATTCACCCAGGCTGCCGACTACTTAGAAACCATAAGAAAGACCAGAAT
TGTTGTGCAGGATATTAGACATGGACAGAGGAATGAAACCCAAAACTCTG
CAGAGCCCAGCTCGTCAGATGGAAGCGGCTCCGAGAGCCCGCAATCAGAA
CAAACTCAGACGTTGGAGCTTTACAATGAGTTGACTGCGTCTGGGATTGA
TCAGGACTTCTTGCAACGGTGGGCCTCTTCTGAGAGCAATTCGCCAGAAG
ATGGACACTACAACCTGCAACTGTCAATCTACATGTATGTTCGTGTTGCA
TTACGACGGCTATTTGATGTGATTCCGATGGTTGTTCGGGACAAGCTGAT
TTATCAAGTGCACAAATACTTCTACCGAGAGCTTTCGGAAGACTTCGACG
ACCATCGAAGATTGAATGAGCTCATTCAGGAGAAATCAAACATCCGGGAA
ATTCGTGTTACTCTCAAGAAGCGACACGACCAACTCAAAGACTCCTTACG
ACGCTTAGAATTGATAGCGAGTTAA

Coding sequence (CDS) from alignment at tig00000075_pilon:333568..335592+

>Ggra9187.t1 ID=Ggra9187.t1|Name=Ggra9187.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2025bp|location=Sequence derived from alignment at tig00000075_pilon:333568..335592+ (Gracilaria gracilis GNS1m male)
ATGCCTCAAGTGCGAAGCAAGTTTGATGATAAGTACAATCGCCACCTTGG
GCAGAAACTTGGCCTTATCGAAGAACTGCGTTCTGAACTTGCTGAAGAGA
AAATCGAATGTCCTGGGATTGTCGTAGTCGGAGCTCAATCCGCCGGGAAA
TCTTCCGTCCTTCAGCGGTTAACAGGCGTATCGTTTCCAAGAGCAGAAAA
CACTTGCACTCGACTGCCGGCTATTGTGAGTCTCCAAACAGACCCAAGTA
TTCATGGCACCCGCATTTATGTTTCACGGGAAGCAGCGTTTAGGAATGCG
CTTGAGTGCGATTCTATGGCGGTGTTGCAGAACCGAATAATGGCCATGAC
GATGGATGTCGAGAATAGCGACGTTTCTGTCAAGAATGAACCTGTTTATA
TACGGTATATTCGTAAGGAAGGCCCAGTCTTCAGTTTAATTGATCTCCCA
GGCATAACGTACATGGACCCGAAGAACCAGAAATTTGATATCCACGAAGA
AACAGTTTCCATGGTTCGGCAATATATAAGTAATCCCAACACCGTAATTC
TTGTTGTTATTCCGGCTCTTGAAGACTTTTCAAATGCAGAAGCCCTCAAG
ATAGCCATGGAGTGTGACAGAGAGGGTAACCGTACAATTGGCGTCGTGAC
CAAGTGCGATGTGGTCTCTGAAAGCTCATACTTTTTGCGCAAAATGCGGA
TGTCAGGTCCGAACGATATCAGACTGAAGCTAGGTTTCGTCGCAGTGCGG
AACAGAGGACCTGGTGAAGAGAACATAAACATAGACGAGGCTGAACGACA
TATGTTTTCAAATCATTCCCTGCTGAAGCAACTCAACCCGACTCAAAAAG
GTTACATGGCTCTGACAAGAAAAATTGTCGAGCTACAAAGTGAGCTCGTG
GATGCGTTTATCCCAAAGACAAAGAAGGCGGTACGTGATAGGATTCAAAA
GATAGAGACGGAACTTGAGTCAATGGGTAAAGTGCCCGAAACTGAGCGGG
AACAGCGCAGTATTCTCAGATCTACCCTTAGCAGCGTCCAAGATACAATG
ACAAGCCTCATCCGCGCCGAAAAGGTTCGCGAAAAGGAATGCAATGTGGC
TGCTCGAACCTATGAGAAACTCATTGCGTTCGGGAGCAAAATCAACGATG
ATCTACCCAACTATTTGGGATGCCATTATAAAGAGGTAGTGGCTCGAGCT
GTTTCTGAATCGGTTGGTCATACACTTCCAAACTTTCAGGCTGACCACCC
GGTTTTGCAAGACCAGGTACAAAAGCTACTCTTCAGCGGGTTAGTAGAGA
GCAACGTCGGAGATCTCATCAATCAGGTGAAAGCGTACATGCTGTCTGTG
TACGAGAAGGTTCTGGCGTCAACTGAAGCTGGGCAGCAGTATCCAAAACT
ACAGATTGCTCTCGTTGAAAAAGTTGACGAAATCTTACGGAAGGCTAGGC
GTGAAGCTTTGGAAGTAACCAATTCCCTCATTGTCGCAGAGTCTTCTAAC
CCATTCACCCAGGCTGCCGACTACTTAGAAACCATAAGAAAGACCAGAAT
TGTTGTGCAGGATATTAGACATGGACAGAGGAATGAAACCCAAAACTCTG
CAGAGCCCAGCTCGTCAGATGGAAGCGGCTCCGAGAGCCCGCAATCAGAA
CAAACTCAGACGTTGGAGCTTTACAATGAGTTGACTGCGTCTGGGATTGA
TCAGGACTTCTTGCAACGGTGGGCCTCTTCTGAGAGCAATTCGCCAGAAG
ATGGACACTACAACCTGCAACTGTCAATCTACATGTATGTTCGTGTTGCA
TTACGACGGCTATTTGATGTGATTCCGATGGTTGTTCGGGACAAGCTGAT
TTATCAAGTGCACAAATACTTCTACCGAGAGCTTTCGGAAGACTTCGACG
ACCATCGAAGATTGAATGAGCTCATTCAGGAGAAATCAAACATCCGGGAA
ATTCGTGTTACTCTCAAGAAGCGACACGACCAACTCAAAGACTCCTTACG
ACGCTTAGAATTGATAGCGAGTTAA