Ggra9180.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9180.t1
Unique NameGgra9180.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length285
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:313569..314423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3827.XP_004513742.1
PFAMsAMP-binding,AMP-binding_C
Max annot lvl35493|Streptophyta
KEGG rclassRC00004,RC00179
KEGG koko:K22133
KEGG ReactionR01558
KEGG Pathwayko00630,ko01100,map00630,map01100
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005911,GO:0006082,GO:0006950,GO:0006952,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009735,GO:0009791,GO:0009987,GO:0010029,GO:0010030,GO:0010033,GO:0010035,GO:0010038,GO:0010154,GO:0010214,GO:0016054,GO:0016405,GO:0016874,GO:0016877,GO:0016878,GO:0019752,GO:0022414,GO:0030054,GO:0032501,GO:0032502,GO:0033609,GO:0033611,GO:0042221,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0046686,GO:0048046,GO:0048316,GO:0048518,GO:0048580,GO:0048582,GO:0048608,GO:0048731,GO:0048856,GO:0050203,GO:0050789,GO:0050793,GO:0050832,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051704,GO:0051707,GO:0055044,GO:0061458,GO:0065007,GO:0071704,GO:0098542,GO:1900140,GO:1901575,GO:2000026
Evalue5.28e-09
EggNOG OGsCOG0318@1|root,KOG1176@2759|Eukaryota,37JNB@33090|Viridiplantae,3GB78@35493|Streptophyta
EC6.2.1.8
Description4-coumarate--CoA ligase-like
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9180Ggra9180Gracilaria gracilis GNS1m malegenetig00000075_pilon 313569..314423 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9180.t1.stop1Ggra9180.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 313569..313571 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9180.t1.CDS1Ggra9180.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 313569..314423 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9180.t1.exon1Ggra9180.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 313569..314423 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9180.t1.start1Ggra9180.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 314421..314423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9180.t1Ggra9180.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 313569..314423 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9180.t1 ID=Ggra9180.t1|Name=Ggra9180.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=285bp
MVASTAAAHGAHLLDETVQQTVDDALEDTASDLTNDLERHTIETDSTVET
TPSSSAQLILDRLTRLEQSQHQMMNQLQSDHEQQMDQLRHKLQHAQSRRQ
HAEENALAQPLVMAVNMTEVEAAVQAASLAEQESATALEEARKVAEDARL
AAGGIPQSAREATKEGDVAYGADGEYIIKKVTVNLDEVERAISISPLISV
CRAFGRPDSKYGNEVYCAVVPKKNVRVSERMLLIHAQKYLATAMVPKRFF
FLQELPSGITRKALAEAQMQGDNAKLQGLPAIEQ*
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spliced messenger RNA

>Ggra9180.t1 ID=Ggra9180.t1|Name=Ggra9180.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=855bp|location=Sequence derived from alignment at tig00000075_pilon:313569..314423- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCGTCCACGGCGGCGGCACACGGCGCTCATTTGCTGGACGAAAC
CGTGCAGCAAACCGTCGATGACGCGCTCGAGGACACTGCCAGTGATCTCA
CAAACGACCTGGAACGCCACACCATCGAGACCGACAGCACCGTGGAAACC
ACCCCAAGCTCCAGCGCGCAACTAATTTTGGATCGTCTCACTCGCCTAGA
ACAATCACAACACCAGATGATGAATCAACTGCAGTCCGACCACGAGCAAC
AGATGGACCAACTGCGTCACAAGTTGCAACACGCTCAATCCAGGCGCCAG
CACGCCGAGGAGAATGCGCTTGCTCAGCCGCTCGTCATGGCCGTCAATAT
GACCGAGGTAGAGGCCGCTGTACAAGCCGCTTCGCTGGCGGAGCAAGAGT
CCGCCACCGCTTTGGAGGAAGCTAGAAAGGTTGCGGAGGATGCTCGATTG
GCAGCCGGTGGAATCCCACAATCCGCCCGCGAAGCAACCAAGGAAGGTGA
CGTTGCCTACGGTGCTGATGGCGAGTACATTATCAAGAAAGTCACTGTCA
ATCTTGACGAAGTAGAGCGTGCTATTAGTATCTCCCCTCTTATCAGCGTA
TGTCGCGCCTTTGGTCGACCAGATTCAAAGTATGGTAATGAGGTTTACTG
TGCCGTCGTTCCAAAGAAGAATGTGCGTGTCTCAGAACGTATGCTTTTAA
TTCACGCTCAAAAGTATTTGGCCACCGCCATGGTACCGAAACGCTTCTTT
TTCCTACAGGAACTCCCTTCGGGTATCACTAGAAAAGCGCTTGCTGAAGC
ACAGATGCAAGGTGATAACGCCAAACTGCAAGGGCTACCTGCCATTGAGC
AGTAG
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protein sequence of Ggra9180.t1

>Ggra9180.t1 ID=Ggra9180.t1|Name=Ggra9180.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=285bp
MVASTAAAHGAHLLDETVQQTVDDALEDTASDLTNDLERHTIETDSTVET
TPSSSAQLILDRLTRLEQSQHQMMNQLQSDHEQQMDQLRHKLQHAQSRRQ
HAEENALAQPLVMAVNMTEVEAAVQAASLAEQESATALEEARKVAEDARL
AAGGIPQSAREATKEGDVAYGADGEYIIKKVTVNLDEVERAISISPLISV
CRAFGRPDSKYGNEVYCAVVPKKNVRVSERMLLIHAQKYLATAMVPKRFF
FLQELPSGITRKALAEAQMQGDNAKLQGLPAIEQ*
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mRNA from alignment at tig00000075_pilon:313569..314423-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9180.t1 ID=Ggra9180.t1|Name=Ggra9180.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=855bp|location=Sequence derived from alignment at tig00000075_pilon:313569..314423- (Gracilaria gracilis GNS1m male)
ATGGTCGCGTCCACGGCGGCGGCACACGGCGCTCATTTGCTGGACGAAAC
CGTGCAGCAAACCGTCGATGACGCGCTCGAGGACACTGCCAGTGATCTCA
CAAACGACCTGGAACGCCACACCATCGAGACCGACAGCACCGTGGAAACC
ACCCCAAGCTCCAGCGCGCAACTAATTTTGGATCGTCTCACTCGCCTAGA
ACAATCACAACACCAGATGATGAATCAACTGCAGTCCGACCACGAGCAAC
AGATGGACCAACTGCGTCACAAGTTGCAACACGCTCAATCCAGGCGCCAG
CACGCCGAGGAGAATGCGCTTGCTCAGCCGCTCGTCATGGCCGTCAATAT
GACCGAGGTAGAGGCCGCTGTACAAGCCGCTTCGCTGGCGGAGCAAGAGT
CCGCCACCGCTTTGGAGGAAGCTAGAAAGGTTGCGGAGGATGCTCGATTG
GCAGCCGGTGGAATCCCACAATCCGCCCGCGAAGCAACCAAGGAAGGTGA
CGTTGCCTACGGTGCTGATGGCGAGTACATTATCAAGAAAGTCACTGTCA
ATCTTGACGAAGTAGAGCGTGCTATTAGTATCTCCCCTCTTATCAGCGTA
TGTCGCGCCTTTGGTCGACCAGATTCAAAGTATGGTAATGAGGTTTACTG
TGCCGTCGTTCCAAAGAAGAATGTGCGTGTCTCAGAACGTATGCTTTTAA
TTCACGCTCAAAAGTATTTGGCCACCGCCATGGTACCGAAACGCTTCTTT
TTCCTACAGGAACTCCCTTCGGGTATCACTAGAAAAGCGCTTGCTGAAGC
ACAGATGCAAGGTGATAACGCCAAACTGCAAGGGCTACCTGCCATTGAGC
AGTAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:313569..314423-

>Ggra9180.t1 ID=Ggra9180.t1|Name=Ggra9180.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=855bp|location=Sequence derived from alignment at tig00000075_pilon:313569..314423- (Gracilaria gracilis GNS1m male)
ATGGTCGCGTCCACGGCGGCGGCACACGGCGCTCATTTGCTGGACGAAAC
CGTGCAGCAAACCGTCGATGACGCGCTCGAGGACACTGCCAGTGATCTCA
CAAACGACCTGGAACGCCACACCATCGAGACCGACAGCACCGTGGAAACC
ACCCCAAGCTCCAGCGCGCAACTAATTTTGGATCGTCTCACTCGCCTAGA
ACAATCACAACACCAGATGATGAATCAACTGCAGTCCGACCACGAGCAAC
AGATGGACCAACTGCGTCACAAGTTGCAACACGCTCAATCCAGGCGCCAG
CACGCCGAGGAGAATGCGCTTGCTCAGCCGCTCGTCATGGCCGTCAATAT
GACCGAGGTAGAGGCCGCTGTACAAGCCGCTTCGCTGGCGGAGCAAGAGT
CCGCCACCGCTTTGGAGGAAGCTAGAAAGGTTGCGGAGGATGCTCGATTG
GCAGCCGGTGGAATCCCACAATCCGCCCGCGAAGCAACCAAGGAAGGTGA
CGTTGCCTACGGTGCTGATGGCGAGTACATTATCAAGAAAGTCACTGTCA
ATCTTGACGAAGTAGAGCGTGCTATTAGTATCTCCCCTCTTATCAGCGTA
TGTCGCGCCTTTGGTCGACCAGATTCAAAGTATGGTAATGAGGTTTACTG
TGCCGTCGTTCCAAAGAAGAATGTGCGTGTCTCAGAACGTATGCTTTTAA
TTCACGCTCAAAAGTATTTGGCCACCGCCATGGTACCGAAACGCTTCTTT
TTCCTACAGGAACTCCCTTCGGGTATCACTAGAAAAGCGCTTGCTGAAGC
ACAGATGCAAGGTGATAACGCCAAACTGCAAGGGCTACCTGCCATTGAGC
AGTAG
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