Ggra9174.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9174.t1
Unique NameGgra9174.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length298
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:297422..298315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708316.1
Preferred nameNAPB
PFAMsSNAP
Max annot lvl2759|Eukaryota
KEGG koko:K15296
KEGG Pathwayko04138,ko04721,map04138,map04721
GOsGO:0000149,GO:0000278,GO:0000281,GO:0000910,GO:0001505,GO:0001654,GO:0001671,GO:0001745,GO:0002009,GO:0002090,GO:0002165,GO:0003674,GO:0005483,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005911,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006891,GO:0006897,GO:0006900,GO:0006901,GO:0006903,GO:0006906,GO:0006914,GO:0006996,GO:0007033,GO:0007049,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007274,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009506,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009987,GO:0010646,GO:0010807,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016079,GO:0016082,GO:0016192,GO:0017156,GO:0017157,GO:0017158,GO:0019222,GO:0019898,GO:0019905,GO:0022008,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0023052,GO:0023061,GO:0030054,GO:0030100,GO:0030154,GO:0030182,GO:0030234,GO:0030424,GO:0031090,GO:0031201,GO:0031323,GO:0031410,GO:0031629,GO:0031982,GO:0032386,GO:0032501,GO:0032502,GO:0032781,GO:0032879,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033267,GO:0034214,GO:0034613,GO:0034622,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035249,GO:0035295,GO:0035494,GO:0036465,GO:0040007,GO:0042144,GO:0042886,GO:0042995,GO:0043005,GO:0043085,GO:0043195,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043462,GO:0043624,GO:0043679,GO:0043933,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044248,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0044877,GO:0045026,GO:0045055,GO:0045176,GO:0045184,GO:0045202,GO:0046903,GO:0046907,GO:0046928,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048259,GO:0048280,GO:0048284,GO:0048488,GO:0048489,GO:0048513,GO:0048526,GO:0048563,GO:0048569,GO:0048589,GO:0048592,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050804,GO:0051046,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051301,GO:0051336,GO:0051345,GO:0051588,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0055044,GO:0060255,GO:0060322,GO:0060341,GO:0060429,GO:0060560,GO:0060562,GO:0060589,GO:0060590,GO:0060627,GO:0061024,GO:0061025,GO:0061640,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070044,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090114,GO:0090174,GO:0090596,GO:0097458,GO:0097479,GO:0097480,GO:0097576,GO:0097708,GO:0098588,GO:0098657,GO:0098693,GO:0098772,GO:0098793,GO:0098796,GO:0098805,GO:0098916,GO:0099003,GO:0099177,GO:0099500,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0120025,GO:0120038,GO:0140029,GO:0150034,GO:1902803,GO:1903047,GO:1903305,GO:1903530,GO:2000300
Evalue3.73e-85
EggNOG OGsKOG1586@1|root,KOG1586@2759|Eukaryota
DescriptionSNARE complex disassembly
COG categoryS
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9174Ggra9174Gracilaria gracilis GNS1m malegenetig00000075_pilon 297422..298315 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9174.t1.stop1Ggra9174.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 297422..297424 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9174.t1.CDS1Ggra9174.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 297422..298315 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9174.t1.exon1Ggra9174.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 297422..298315 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9174.t1.start1Ggra9174.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 298313..298315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9174.t1Ggra9174.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 297422..298315 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9174.t1 ID=Ggra9174.t1|Name=Ggra9174.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=298bp
MNASRKEDEGENLLAEAEKKLATRGGFFKSLMGLSSTNKEEAAETFVKAA
NCFKLAKAWSKAGNALEKAAESFAEISDMEYEAASKYSEAGKAYKNSDIR
KAVAAYENAINLYSDAARFQQCARLKKEVAEIFEGESNNAGALDAYSAAA
DFYDMDDAKSNANSMRVKVASLYALEGKFAEAADLYESIAENALSSNLLK
FGAREHLLRAGLCRLCLSDVIGAQRALEKYDTMDPTFATSREGRLLEAIV
KAVDEGDVEAFTNSVYEYDSMSKLDEWKTTVLLKIKNNIKADEDDLT*
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spliced messenger RNA

>Ggra9174.t1 ID=Ggra9174.t1|Name=Ggra9174.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000075_pilon:297422..298315- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGCATCAAGAAAGGAAGATGAAGGAGAAAATCTGCTGGCTGAAGC
AGAAAAGAAATTGGCCACTCGAGGGGGCTTCTTCAAGTCTCTGATGGGTT
TGTCGTCCACAAACAAAGAAGAAGCAGCTGAGACATTTGTGAAGGCAGCC
AACTGCTTCAAGCTGGCCAAGGCATGGTCAAAAGCAGGAAATGCCCTTGA
GAAAGCCGCTGAATCCTTTGCAGAAATATCCGATATGGAGTACGAAGCCG
CTTCGAAGTATTCAGAAGCTGGAAAGGCATATAAGAATTCAGATATCAGA
AAAGCGGTTGCTGCGTATGAGAATGCTATTAACTTGTATTCAGATGCCGC
ACGGTTTCAACAATGCGCACGACTAAAGAAAGAAGTCGCGGAGATCTTTG
AAGGTGAAAGCAACAACGCTGGTGCTCTGGATGCGTACAGTGCTGCGGCA
GACTTCTACGATATGGATGATGCAAAATCGAATGCCAATTCCATGAGAGT
CAAGGTTGCAAGCTTATACGCACTAGAAGGAAAGTTTGCCGAAGCCGCAG
ATCTTTACGAATCTATTGCCGAAAATGCTCTAAGCAGTAATCTGCTCAAA
TTTGGAGCAAGAGAACATCTCTTGAGAGCTGGTTTGTGCCGTCTCTGCTT
GTCAGATGTGATTGGAGCTCAAAGAGCTCTTGAGAAATATGACACTATGG
ACCCCACTTTTGCAACTTCTCGAGAAGGTAGACTTTTGGAAGCTATCGTC
AAAGCCGTAGACGAGGGAGATGTCGAGGCGTTCACCAACAGCGTATACGA
ATACGACTCTATGAGTAAACTGGATGAATGGAAGACGACAGTCCTGTTGA
AAATCAAAAACAACATTAAGGCTGACGAGGATGATCTCACTTGA
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protein sequence of Ggra9174.t1

>Ggra9174.t1 ID=Ggra9174.t1|Name=Ggra9174.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=298bp
MNASRKEDEGENLLAEAEKKLATRGGFFKSLMGLSSTNKEEAAETFVKAA
NCFKLAKAWSKAGNALEKAAESFAEISDMEYEAASKYSEAGKAYKNSDIR
KAVAAYENAINLYSDAARFQQCARLKKEVAEIFEGESNNAGALDAYSAAA
DFYDMDDAKSNANSMRVKVASLYALEGKFAEAADLYESIAENALSSNLLK
FGAREHLLRAGLCRLCLSDVIGAQRALEKYDTMDPTFATSREGRLLEAIV
KAVDEGDVEAFTNSVYEYDSMSKLDEWKTTVLLKIKNNIKADEDDLT*
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mRNA from alignment at tig00000075_pilon:297422..298315-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9174.t1 ID=Ggra9174.t1|Name=Ggra9174.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000075_pilon:297422..298315- (Gracilaria gracilis GNS1m male)
ATGAATGCATCAAGAAAGGAAGATGAAGGAGAAAATCTGCTGGCTGAAGC
AGAAAAGAAATTGGCCACTCGAGGGGGCTTCTTCAAGTCTCTGATGGGTT
TGTCGTCCACAAACAAAGAAGAAGCAGCTGAGACATTTGTGAAGGCAGCC
AACTGCTTCAAGCTGGCCAAGGCATGGTCAAAAGCAGGAAATGCCCTTGA
GAAAGCCGCTGAATCCTTTGCAGAAATATCCGATATGGAGTACGAAGCCG
CTTCGAAGTATTCAGAAGCTGGAAAGGCATATAAGAATTCAGATATCAGA
AAAGCGGTTGCTGCGTATGAGAATGCTATTAACTTGTATTCAGATGCCGC
ACGGTTTCAACAATGCGCACGACTAAAGAAAGAAGTCGCGGAGATCTTTG
AAGGTGAAAGCAACAACGCTGGTGCTCTGGATGCGTACAGTGCTGCGGCA
GACTTCTACGATATGGATGATGCAAAATCGAATGCCAATTCCATGAGAGT
CAAGGTTGCAAGCTTATACGCACTAGAAGGAAAGTTTGCCGAAGCCGCAG
ATCTTTACGAATCTATTGCCGAAAATGCTCTAAGCAGTAATCTGCTCAAA
TTTGGAGCAAGAGAACATCTCTTGAGAGCTGGTTTGTGCCGTCTCTGCTT
GTCAGATGTGATTGGAGCTCAAAGAGCTCTTGAGAAATATGACACTATGG
ACCCCACTTTTGCAACTTCTCGAGAAGGTAGACTTTTGGAAGCTATCGTC
AAAGCCGTAGACGAGGGAGATGTCGAGGCGTTCACCAACAGCGTATACGA
ATACGACTCTATGAGTAAACTGGATGAATGGAAGACGACAGTCCTGTTGA
AAATCAAAAACAACATTAAGGCTGACGAGGATGATCTCACTTGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:297422..298315-

>Ggra9174.t1 ID=Ggra9174.t1|Name=Ggra9174.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00000075_pilon:297422..298315- (Gracilaria gracilis GNS1m male)
ATGAATGCATCAAGAAAGGAAGATGAAGGAGAAAATCTGCTGGCTGAAGC
AGAAAAGAAATTGGCCACTCGAGGGGGCTTCTTCAAGTCTCTGATGGGTT
TGTCGTCCACAAACAAAGAAGAAGCAGCTGAGACATTTGTGAAGGCAGCC
AACTGCTTCAAGCTGGCCAAGGCATGGTCAAAAGCAGGAAATGCCCTTGA
GAAAGCCGCTGAATCCTTTGCAGAAATATCCGATATGGAGTACGAAGCCG
CTTCGAAGTATTCAGAAGCTGGAAAGGCATATAAGAATTCAGATATCAGA
AAAGCGGTTGCTGCGTATGAGAATGCTATTAACTTGTATTCAGATGCCGC
ACGGTTTCAACAATGCGCACGACTAAAGAAAGAAGTCGCGGAGATCTTTG
AAGGTGAAAGCAACAACGCTGGTGCTCTGGATGCGTACAGTGCTGCGGCA
GACTTCTACGATATGGATGATGCAAAATCGAATGCCAATTCCATGAGAGT
CAAGGTTGCAAGCTTATACGCACTAGAAGGAAAGTTTGCCGAAGCCGCAG
ATCTTTACGAATCTATTGCCGAAAATGCTCTAAGCAGTAATCTGCTCAAA
TTTGGAGCAAGAGAACATCTCTTGAGAGCTGGTTTGTGCCGTCTCTGCTT
GTCAGATGTGATTGGAGCTCAAAGAGCTCTTGAGAAATATGACACTATGG
ACCCCACTTTTGCAACTTCTCGAGAAGGTAGACTTTTGGAAGCTATCGTC
AAAGCCGTAGACGAGGGAGATGTCGAGGCGTTCACCAACAGCGTATACGA
ATACGACTCTATGAGTAAACTGGATGAATGGAAGACGACAGTCCTGTTGA
AAATCAAAAACAACATTAAGGCTGACGAGGATGATCTCACTTGA
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