Ggra9172.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9172.t1
Unique Name	Ggra9172.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	564

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:292737..294428 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707714.1
PFAMs	PH,Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04456,ko:K13303
KEGG Pathway	ko01521,ko01522,ko01524,ko04010,ko04012,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04140,ko04150,ko04151,ko04152,ko04210,ko04211,ko04212,ko04213,ko04218,ko04261,ko04370,ko04371,ko04380,ko04510,ko04550,ko04611,ko04620,ko04630,ko04660,ko04662,ko04664,ko04666,ko04668,ko04722,ko04725,ko04728,ko04910,ko04914,ko04915,ko04917,ko04919,ko04920,ko04922,ko04923,ko04926,ko04931,ko04932,ko04933,ko04973,ko05142,ko05145,ko05152,ko05160,ko05161,ko05162,ko05164,ko05165,ko05166,ko05167,ko05169,ko05200,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05218,ko05220,ko05221,ko05222,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,ko05418,map01521,map01522,map01524,map04010,map04012,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04140,map04150,map04151,map04152,map04210,map04211,map04212,map04213,map04218,map04261,map04370,map04371,map04380,map04510,map04550,map04611,map04620,map04630,map04660,map04662,map04664,map04666,map04668,map04722,map04725,map04728,map04910,map04914,map04915,map04917,map04919,map04920,map04922,map04923,map04926,map04931,map04932,map04933,map04973,map05142,map05145,map05152,map05160,map05161,map05162,map05164,map05165,map05166,map05167,map05169,map05200,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05218,map05220,map05221,map05222,map05223,map05224,map05225,map05226,map05230,map05231,map05418
KEGG Module	M00676
Evalue	2.72e-72
EggNOG OGs	KOG0598@1\|root,KOG0598@2759\|Eukaryota
EC	2.7.11.1
Description	protein serine/threonine kinase activity
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9172	Ggra9172	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 292737..294428 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9172.t1.stop1	Ggra9172.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 292737..292739 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9172.t1.CDS1	Ggra9172.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 292737..294428 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9172.t1.exon1	Ggra9172.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 292737..294428 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9172.t1.start1	Ggra9172.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 294426..294428 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9172.t1	Ggra9172.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 292737..294428 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:292737..294428-
coding sequence from alignment at tig00000075_pilon:292737..294428-

mRNA sequence

>Ggra9172.t1 ID=Ggra9172.t1|Name=Ggra9172.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp
MRGRSFLPNSLQRSAPLPFEPNAPAPSANTKTFRVNPHLDHLCLFKKLPL
RAEGQLFHKASVLQRSRLYHAELRSSTIVAFRNVARANARDSSLDDVIAV
LSVHKYSFDLVQKVDNCARIYITPRQPTSVQKSLLYIKVLNEDEAKIWTQ
ALAILQSHPLPSIPDLSVQAIIGSGFSSKVLMVQSSHDEKYYALKVMQKS
VIMRSVSSFIHVAAERQIMSTVAPHPFVIPLCFAFQTNTCLYMATPFCAG
GDLASYMRAKFDQPGQPSRLVVDSKTYHVSPSHLPEWQARLIAAEVILGL
EHLHMFDVVYRDLKLENVFIDGSGHIRIGDLGLAKYLDNKSSRDGCLRTT
TICGTRTYVAPEMLMGNPYSFEVDLWCLGVMLYRIMSGEYPYKAQRAKDL
FERIKYDKVFIPPYLSPDAQDLLAGLLHKDPSERLSVNTVKKHPFFRDIK
WNDVLNLRYEACIPDIHTGATPLDALHNFDLRHVEDETVGEFTPEADKMI
AQNIAQFVALENVLIGFEYVNTPFESVASPLSLSAKSGSLFSKIASIDVD
PTPLFQGFNRKWS*

spliced messenger RNA

>Ggra9172.t1 ID=Ggra9172.t1|Name=Ggra9172.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1692bp|location=Sequence derived from alignment at tig00000075_pilon:292737..294428- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGGACGCAGTTTTCTTCCAAACTCTTTGCAACGCAGTGCGCCGCT
ACCATTTGAACCGAATGCACCCGCACCGAGCGCTAACACCAAGACGTTCA
GGGTGAACCCGCACCTTGACCATCTTTGCCTTTTCAAGAAGCTACCGCTG
CGTGCTGAAGGCCAATTGTTCCACAAGGCTTCTGTACTACAACGCTCAAG
ACTCTACCACGCGGAACTGAGGAGTAGCACAATTGTTGCCTTTCGAAATG
TAGCGCGTGCAAATGCCAGGGACTCTAGTTTGGACGACGTTATAGCTGTG
CTTTCTGTTCACAAGTACAGCTTTGATCTGGTACAGAAAGTTGACAATTG
TGCGCGAATATACATCACGCCTAGACAGCCCACTTCTGTACAAAAGTCTT
TATTGTACATTAAGGTACTTAACGAAGACGAGGCGAAGATCTGGACACAG
GCCCTCGCCATACTTCAGTCGCACCCGCTACCATCTATTCCAGACCTCAG
TGTTCAGGCAATTATCGGGTCTGGATTCAGTTCAAAAGTGCTCATGGTTC
AATCTTCGCATGACGAGAAATACTATGCTCTCAAAGTGATGCAAAAGTCA
GTGATAATGAGATCAGTTTCCTCTTTTATCCATGTTGCTGCTGAGCGTCA
GATCATGTCAACAGTAGCACCGCATCCTTTCGTGATACCGCTTTGTTTTG
CCTTTCAAACGAACACATGCTTGTACATGGCAACTCCATTTTGCGCTGGA
GGCGATTTGGCATCATATATGCGAGCCAAGTTTGACCAACCAGGTCAGCC
ATCTAGACTCGTTGTTGATTCTAAGACTTACCATGTGTCTCCATCCCATC
TTCCAGAATGGCAAGCCCGTTTGATCGCCGCTGAAGTGATCTTAGGACTC
GAGCACCTTCACATGTTTGATGTTGTGTATAGAGATCTCAAACTAGAGAA
CGTTTTTATCGATGGATCGGGACACATTCGAATCGGGGATTTGGGTTTGG
CGAAGTACCTTGATAATAAATCATCCCGTGATGGATGCCTGAGAACAACC
ACCATTTGTGGAACTCGCACTTACGTGGCTCCAGAAATGCTGATGGGAAA
CCCGTATTCCTTTGAAGTAGACTTGTGGTGTCTCGGAGTTATGTTGTACA
GGATTATGTCCGGGGAGTACCCTTACAAAGCACAAAGAGCAAAGGATCTT
TTCGAAAGAATCAAGTACGACAAAGTTTTCATCCCCCCTTATCTTTCGCC
CGACGCTCAAGATCTTTTGGCTGGTCTGCTACACAAAGATCCGAGCGAAA
GACTCTCGGTTAACACCGTCAAGAAGCACCCGTTCTTTCGTGATATAAAA
TGGAATGATGTTCTGAATCTCCGCTACGAAGCCTGCATTCCCGACATACA
TACTGGTGCGACCCCTTTGGACGCTTTACACAACTTCGATCTTCGCCATG
TTGAAGATGAAACTGTGGGAGAATTCACACCCGAAGCCGACAAGATGATT
GCACAGAATATTGCTCAATTTGTGGCTCTGGAGAACGTTTTGATTGGCTT
TGAGTACGTGAATACTCCTTTCGAAAGTGTTGCTTCTCCGCTTTCTCTAT
CTGCCAAATCAGGAAGTTTGTTCTCAAAAATAGCATCCATTGATGTGGAT
CCGACCCCCCTTTTCCAAGGCTTCAATCGAAAATGGAGCTAA

protein sequence of Ggra9172.t1

>Ggra9172.t1 ID=Ggra9172.t1|Name=Ggra9172.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=564bp
MRGRSFLPNSLQRSAPLPFEPNAPAPSANTKTFRVNPHLDHLCLFKKLPL
RAEGQLFHKASVLQRSRLYHAELRSSTIVAFRNVARANARDSSLDDVIAV
LSVHKYSFDLVQKVDNCARIYITPRQPTSVQKSLLYIKVLNEDEAKIWTQ
ALAILQSHPLPSIPDLSVQAIIGSGFSSKVLMVQSSHDEKYYALKVMQKS
VIMRSVSSFIHVAAERQIMSTVAPHPFVIPLCFAFQTNTCLYMATPFCAG
GDLASYMRAKFDQPGQPSRLVVDSKTYHVSPSHLPEWQARLIAAEVILGL
EHLHMFDVVYRDLKLENVFIDGSGHIRIGDLGLAKYLDNKSSRDGCLRTT
TICGTRTYVAPEMLMGNPYSFEVDLWCLGVMLYRIMSGEYPYKAQRAKDL
FERIKYDKVFIPPYLSPDAQDLLAGLLHKDPSERLSVNTVKKHPFFRDIK
WNDVLNLRYEACIPDIHTGATPLDALHNFDLRHVEDETVGEFTPEADKMI
AQNIAQFVALENVLIGFEYVNTPFESVASPLSLSAKSGSLFSKIASIDVD
PTPLFQGFNRKWS*

mRNA from alignment at tig00000075_pilon:292737..294428-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9172.t1 ID=Ggra9172.t1|Name=Ggra9172.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1692bp|location=Sequence derived from alignment at tig00000075_pilon:292737..294428- (Gracilaria gracilis GNS1m male)
ATGCGAGGACGCAGTTTTCTTCCAAACTCTTTGCAACGCAGTGCGCCGCT
ACCATTTGAACCGAATGCACCCGCACCGAGCGCTAACACCAAGACGTTCA
GGGTGAACCCGCACCTTGACCATCTTTGCCTTTTCAAGAAGCTACCGCTG
CGTGCTGAAGGCCAATTGTTCCACAAGGCTTCTGTACTACAACGCTCAAG
ACTCTACCACGCGGAACTGAGGAGTAGCACAATTGTTGCCTTTCGAAATG
TAGCGCGTGCAAATGCCAGGGACTCTAGTTTGGACGACGTTATAGCTGTG
CTTTCTGTTCACAAGTACAGCTTTGATCTGGTACAGAAAGTTGACAATTG
TGCGCGAATATACATCACGCCTAGACAGCCCACTTCTGTACAAAAGTCTT
TATTGTACATTAAGGTACTTAACGAAGACGAGGCGAAGATCTGGACACAG
GCCCTCGCCATACTTCAGTCGCACCCGCTACCATCTATTCCAGACCTCAG
TGTTCAGGCAATTATCGGGTCTGGATTCAGTTCAAAAGTGCTCATGGTTC
AATCTTCGCATGACGAGAAATACTATGCTCTCAAAGTGATGCAAAAGTCA
GTGATAATGAGATCAGTTTCCTCTTTTATCCATGTTGCTGCTGAGCGTCA
GATCATGTCAACAGTAGCACCGCATCCTTTCGTGATACCGCTTTGTTTTG
CCTTTCAAACGAACACATGCTTGTACATGGCAACTCCATTTTGCGCTGGA
GGCGATTTGGCATCATATATGCGAGCCAAGTTTGACCAACCAGGTCAGCC
ATCTAGACTCGTTGTTGATTCTAAGACTTACCATGTGTCTCCATCCCATC
TTCCAGAATGGCAAGCCCGTTTGATCGCCGCTGAAGTGATCTTAGGACTC
GAGCACCTTCACATGTTTGATGTTGTGTATAGAGATCTCAAACTAGAGAA
CGTTTTTATCGATGGATCGGGACACATTCGAATCGGGGATTTGGGTTTGG
CGAAGTACCTTGATAATAAATCATCCCGTGATGGATGCCTGAGAACAACC
ACCATTTGTGGAACTCGCACTTACGTGGCTCCAGAAATGCTGATGGGAAA
CCCGTATTCCTTTGAAGTAGACTTGTGGTGTCTCGGAGTTATGTTGTACA
GGATTATGTCCGGGGAGTACCCTTACAAAGCACAAAGAGCAAAGGATCTT
TTCGAAAGAATCAAGTACGACAAAGTTTTCATCCCCCCTTATCTTTCGCC
CGACGCTCAAGATCTTTTGGCTGGTCTGCTACACAAAGATCCGAGCGAAA
GACTCTCGGTTAACACCGTCAAGAAGCACCCGTTCTTTCGTGATATAAAA
TGGAATGATGTTCTGAATCTCCGCTACGAAGCCTGCATTCCCGACATACA
TACTGGTGCGACCCCTTTGGACGCTTTACACAACTTCGATCTTCGCCATG
TTGAAGATGAAACTGTGGGAGAATTCACACCCGAAGCCGACAAGATGATT
GCACAGAATATTGCTCAATTTGTGGCTCTGGAGAACGTTTTGATTGGCTT
TGAGTACGTGAATACTCCTTTCGAAAGTGTTGCTTCTCCGCTTTCTCTAT
CTGCCAAATCAGGAAGTTTGTTCTCAAAAATAGCATCCATTGATGTGGAT
CCGACCCCCCTTTTCCAAGGCTTCAATCGAAAATGGAGCTAA

Coding sequence (CDS) from alignment at tig00000075_pilon:292737..294428-

>Ggra9172.t1 ID=Ggra9172.t1|Name=Ggra9172.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1692bp|location=Sequence derived from alignment at tig00000075_pilon:292737..294428- (Gracilaria gracilis GNS1m male)
ATGCGAGGACGCAGTTTTCTTCCAAACTCTTTGCAACGCAGTGCGCCGCT
ACCATTTGAACCGAATGCACCCGCACCGAGCGCTAACACCAAGACGTTCA
GGGTGAACCCGCACCTTGACCATCTTTGCCTTTTCAAGAAGCTACCGCTG
CGTGCTGAAGGCCAATTGTTCCACAAGGCTTCTGTACTACAACGCTCAAG
ACTCTACCACGCGGAACTGAGGAGTAGCACAATTGTTGCCTTTCGAAATG
TAGCGCGTGCAAATGCCAGGGACTCTAGTTTGGACGACGTTATAGCTGTG
CTTTCTGTTCACAAGTACAGCTTTGATCTGGTACAGAAAGTTGACAATTG
TGCGCGAATATACATCACGCCTAGACAGCCCACTTCTGTACAAAAGTCTT
TATTGTACATTAAGGTACTTAACGAAGACGAGGCGAAGATCTGGACACAG
GCCCTCGCCATACTTCAGTCGCACCCGCTACCATCTATTCCAGACCTCAG
TGTTCAGGCAATTATCGGGTCTGGATTCAGTTCAAAAGTGCTCATGGTTC
AATCTTCGCATGACGAGAAATACTATGCTCTCAAAGTGATGCAAAAGTCA
GTGATAATGAGATCAGTTTCCTCTTTTATCCATGTTGCTGCTGAGCGTCA
GATCATGTCAACAGTAGCACCGCATCCTTTCGTGATACCGCTTTGTTTTG
CCTTTCAAACGAACACATGCTTGTACATGGCAACTCCATTTTGCGCTGGA
GGCGATTTGGCATCATATATGCGAGCCAAGTTTGACCAACCAGGTCAGCC
ATCTAGACTCGTTGTTGATTCTAAGACTTACCATGTGTCTCCATCCCATC
TTCCAGAATGGCAAGCCCGTTTGATCGCCGCTGAAGTGATCTTAGGACTC
GAGCACCTTCACATGTTTGATGTTGTGTATAGAGATCTCAAACTAGAGAA
CGTTTTTATCGATGGATCGGGACACATTCGAATCGGGGATTTGGGTTTGG
CGAAGTACCTTGATAATAAATCATCCCGTGATGGATGCCTGAGAACAACC
ACCATTTGTGGAACTCGCACTTACGTGGCTCCAGAAATGCTGATGGGAAA
CCCGTATTCCTTTGAAGTAGACTTGTGGTGTCTCGGAGTTATGTTGTACA
GGATTATGTCCGGGGAGTACCCTTACAAAGCACAAAGAGCAAAGGATCTT
TTCGAAAGAATCAAGTACGACAAAGTTTTCATCCCCCCTTATCTTTCGCC
CGACGCTCAAGATCTTTTGGCTGGTCTGCTACACAAAGATCCGAGCGAAA
GACTCTCGGTTAACACCGTCAAGAAGCACCCGTTCTTTCGTGATATAAAA
TGGAATGATGTTCTGAATCTCCGCTACGAAGCCTGCATTCCCGACATACA
TACTGGTGCGACCCCTTTGGACGCTTTACACAACTTCGATCTTCGCCATG
TTGAAGATGAAACTGTGGGAGAATTCACACCCGAAGCCGACAAGATGATT
GCACAGAATATTGCTCAATTTGTGGCTCTGGAGAACGTTTTGATTGGCTT
TGAGTACGTGAATACTCCTTTCGAAAGTGTTGCTTCTCCGCTTTCTCTAT
CTGCCAAATCAGGAAGTTTGTTCTCAAAAATAGCATCCATTGATGTGGAT
CCGACCCCCCTTTTCCAAGGCTTCAATCGAAAATGGAGCTAA