Ggra9165.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9165.t1
Unique NameGgra9165.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:279210..280355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4096.XP_009777326.1
PFAMsATP_bind_1
Max annot lvl35493|Streptophyta
KEGG koko:K06883
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005874,GO:0006996,GO:0007275,GO:0008150,GO:0009657,GO:0009658,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009987,GO:0010154,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022414,GO:0032501,GO:0032502,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0048316,GO:0048507,GO:0048608,GO:0048731,GO:0048856,GO:0051301,GO:0061458,GO:0071840,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1902182
Evalue2.54e-102
EggNOG OGsCOG1100@1|root,KOG1533@2759|Eukaryota,37NMP@33090|Viridiplantae,3GDMU@35493|Streptophyta,44FA2@71274|asterids
DescriptionConserved hypothetical ATP binding protein
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9165Ggra9165Gracilaria gracilis GNS1m malegenetig00000075_pilon 279210..280355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9165.t1Ggra9165.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 279210..280355 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9165.t1.stop1Ggra9165.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 279210..279212 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9165.t1.CDS1Ggra9165.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 279210..279532 -
Ggra9165.t1.CDS2Ggra9165.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 279615..279771 -
Ggra9165.t1.CDS3Ggra9165.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000075_pilon 279862..280159 -
Ggra9165.t1.CDS4Ggra9165.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000075_pilon 280261..280355 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9165.t1.exon1Ggra9165.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 279210..279532 -
Ggra9165.t1.exon2Ggra9165.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 279615..279771 -
Ggra9165.t1.exon3Ggra9165.t1.exon3Gracilaria gracilis GNS1m maleexontig00000075_pilon 279862..280159 -
Ggra9165.t1.exon4Ggra9165.t1.exon4Gracilaria gracilis GNS1m maleexontig00000075_pilon 280261..280355 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9165.t1.intron1Ggra9165.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 279533..279614 -
Ggra9165.t1.intron2Ggra9165.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000075_pilon 279772..279861 -
Ggra9165.t1.intron3Ggra9165.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000075_pilon 280160..280260 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9165.t1.start1Ggra9165.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 280353..280355 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9165.t1 ID=Ggra9165.t1|Name=Ggra9165.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=291bp
MVGFGQVVVGAPGSGKTTYCAGLMQYFKAIGRDAVVFNMDPANEKLPYEA
AADISELVNTETVASELSLGPNGSLLYAMEFLEKNMEWLNKKLSENTGKY
VVFDFPGQIELYTHNECIRTIVQSLDKRGYRLTQVNMVDAHYCADASKFI
AVMLTSATMMLQLELPAVNVLSKVDLIEQYGTLSRNLDFYTEASDLGKLL
HELGQDPRLKKYAKLNEAIVDVVEDFPFVGYHTLDIQDKESVMRLVKAID
KSNGYMYANLDGQRVTYDVLVGKPDMDNRWVAEVQERYMK*
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spliced messenger RNA

>Ggra9165.t1 ID=Ggra9165.t1|Name=Ggra9165.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000075_pilon:279210..280355- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGGTTTTGGGCAGGTAGTTGTTGGGGCTCCTGGGTCGGGGAAAAC
AACGTATTGTGCTGGATTAATGCAGTACTTCAAAGCAATTGGGCGAGATG
CTGTTGTTTTCAACATGGACCCTGCAAATGAAAAGTTACCGTACGAAGCT
GCCGCGGATATATCAGAACTTGTCAACACCGAAACTGTAGCCTCCGAACT
TTCCCTTGGCCCTAATGGAAGCCTTCTTTATGCAATGGAGTTTCTTGAAA
AAAACATGGAGTGGTTAAACAAGAAGCTTTCTGAGAACACAGGCAAATAC
GTTGTTTTTGACTTTCCGGGACAAATTGAGCTATATACTCATAATGAATG
CATTCGAACCATTGTTCAAAGCCTTGATAAGCGAGGGTACAGATTGACGC
AGGTGAACATGGTTGATGCGCATTATTGCGCGGACGCATCCAAGTTTATC
GCTGTGATGCTTACATCTGCCACGATGATGTTACAACTTGAGCTTCCCGC
CGTTAACGTCCTTTCAAAAGTTGATCTCATAGAACAGTACGGGACTCTTT
CTCGAAACTTGGATTTTTATACGGAAGCGAGTGATCTTGGAAAACTTTTG
CACGAATTGGGACAAGATCCACGCCTTAAGAAGTATGCTAAGCTCAATGA
AGCAATTGTGGACGTTGTTGAAGACTTTCCCTTTGTCGGATATCATACTT
TGGACATTCAAGACAAAGAGAGTGTGATGCGATTAGTGAAAGCCATCGAC
AAATCCAATGGATACATGTACGCCAATTTAGATGGTCAAAGAGTCACGTA
TGACGTACTCGTAGGAAAGCCAGATATGGACAACAGATGGGTAGCCGAAG
TCCAGGAGCGGTACATGAAGTAG
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protein sequence of Ggra9165.t1

>Ggra9165.t1 ID=Ggra9165.t1|Name=Ggra9165.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=291bp
MVGFGQVVVGAPGSGKTTYCAGLMQYFKAIGRDAVVFNMDPANEKLPYEA
AADISELVNTETVASELSLGPNGSLLYAMEFLEKNMEWLNKKLSENTGKY
VVFDFPGQIELYTHNECIRTIVQSLDKRGYRLTQVNMVDAHYCADASKFI
AVMLTSATMMLQLELPAVNVLSKVDLIEQYGTLSRNLDFYTEASDLGKLL
HELGQDPRLKKYAKLNEAIVDVVEDFPFVGYHTLDIQDKESVMRLVKAID
KSNGYMYANLDGQRVTYDVLVGKPDMDNRWVAEVQERYMK*
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mRNA from alignment at tig00000075_pilon:279210..280355-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9165.t1 ID=Ggra9165.t1|Name=Ggra9165.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000075_pilon:279210..280355- (Gracilaria gracilis GNS1m male)
ATGGTCGGTTTTGGGCAGGTAGTTGTTGGGGCTCCTGGGTCGGGGAAAAC
AACGTATTGTGCTGGATTAATGCAGTACTTCAAAGCAATTGGGCGGTAAG
AATCAAAGAGCTCGACGTTCTGTTTTCACCCCAACGCTAACGCATTTGTT
TCCCTTTGATATGCGCTCCATATTGATGTTTGAATGCTCCTAATAGAGAT
GCTGTTGTTTTCAACATGGACCCTGCAAATGAAAAGTTACCGTACGAAGC
TGCCGCGGATATATCAGAACTTGTCAACACCGAAACTGTAGCCTCCGAAC
TTTCCCTTGGCCCTAATGGAAGCCTTCTTTATGCAATGGAGTTTCTTGAA
AAAAACATGGAGTGGTTAAACAAGAAGCTTTCTGAGAACACAGGCAAATA
CGTTGTTTTTGACTTTCCGGGACAAATTGAGCTATATACTCATAATGAAT
GCATTCGAACCATTGTTCAAAGCCTTGATAAGCGAGGGTACAGAGTAAGT
TGGCTGAAACCATGCAACGTTAATTGCGAGCCTTGTTATACGGTAGCCCT
AACATTGACATTATCCCGCCTAATTCGTTGGTAGTTGACGCAGGTGAACA
TGGTTGATGCGCATTATTGCGCGGACGCATCCAAGTTTATCGCTGTGATG
CTTACATCTGCCACGATGATGTTACAACTTGAGCTTCCCGCCGTTAACGT
CCTTTCAAAAGTTGATCTCATAGAACAGTACGGGACTCTTTGTACGTTTT
CAACAGTACTCACATTCTTAAGACGGGAGAGTAGTTCTAACTTGCTTGGA
TTGTCGAATTTTTCTCTTCCCAGCTCGAAACTTGGATTTTTATACGGAAG
CGAGTGATCTTGGAAAACTTTTGCACGAATTGGGACAAGATCCACGCCTT
AAGAAGTATGCTAAGCTCAATGAAGCAATTGTGGACGTTGTTGAAGACTT
TCCCTTTGTCGGATATCATACTTTGGACATTCAAGACAAAGAGAGTGTGA
TGCGATTAGTGAAAGCCATCGACAAATCCAATGGATACATGTACGCCAAT
TTAGATGGTCAAAGAGTCACGTATGACGTACTCGTAGGAAAGCCAGATAT
GGACAACAGATGGGTAGCCGAAGTCCAGGAGCGGTACATGAAGTAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:279210..280355-

>Ggra9165.t1 ID=Ggra9165.t1|Name=Ggra9165.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00000075_pilon:279210..280355- (Gracilaria gracilis GNS1m male)
ATGGTCGGTTTTGGGCAGGTAGTTGTTGGGGCTCCTGGGTCGGGGAAAAC
AACGTATTGTGCTGGATTAATGCAGTACTTCAAAGCAATTGGGCGAGATG
CTGTTGTTTTCAACATGGACCCTGCAAATGAAAAGTTACCGTACGAAGCT
GCCGCGGATATATCAGAACTTGTCAACACCGAAACTGTAGCCTCCGAACT
TTCCCTTGGCCCTAATGGAAGCCTTCTTTATGCAATGGAGTTTCTTGAAA
AAAACATGGAGTGGTTAAACAAGAAGCTTTCTGAGAACACAGGCAAATAC
GTTGTTTTTGACTTTCCGGGACAAATTGAGCTATATACTCATAATGAATG
CATTCGAACCATTGTTCAAAGCCTTGATAAGCGAGGGTACAGATTGACGC
AGGTGAACATGGTTGATGCGCATTATTGCGCGGACGCATCCAAGTTTATC
GCTGTGATGCTTACATCTGCCACGATGATGTTACAACTTGAGCTTCCCGC
CGTTAACGTCCTTTCAAAAGTTGATCTCATAGAACAGTACGGGACTCTTT
CTCGAAACTTGGATTTTTATACGGAAGCGAGTGATCTTGGAAAACTTTTG
CACGAATTGGGACAAGATCCACGCCTTAAGAAGTATGCTAAGCTCAATGA
AGCAATTGTGGACGTTGTTGAAGACTTTCCCTTTGTCGGATATCATACTT
TGGACATTCAAGACAAAGAGAGTGTGATGCGATTAGTGAAAGCCATCGAC
AAATCCAATGGATACATGTACGCCAATTTAGATGGTCAAAGAGTCACGTA
TGACGTACTCGTAGGAAAGCCAGATATGGACAACAGATGGGTAGCCGAAG
TCCAGGAGCGGTACATGAAGTAG
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