Ggra9163.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9163.t1
Unique NameGgra9163.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length332
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:273269..274264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S4_120V6.1
PFAMsAAA,Rep_fac_C
Max annot lvl35493|Streptophyta
KEGG koko:K10755
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
GOsGO:0000166,GO:0000723,GO:0000731,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0017076,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019725,GO:0019985,GO:0022402,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031390,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033260,GO:0033554,GO:0033683,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0042276,GO:0042592,GO:0042769,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044786,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051606,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070987,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0097159,GO:0097367,GO:1900262,GO:1900264,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:2000112,GO:2000278,GO:2000573
Evalue1.4e-137
EggNOG OGsCOG0470@1|root,KOG0991@2759|Eukaryota,37MIC@33090|Viridiplantae,3GB7C@35493|Streptophyta
Descriptionreplication factor C
COG categoryL
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9163Ggra9163Gracilaria gracilis GNS1m malegenetig00000075_pilon 273269..274264 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9163.t1.start1Ggra9163.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 273269..273271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9163.t1.CDS1Ggra9163.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 273269..274264 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9163.t1.exon1Ggra9163.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 273269..274264 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9163.t1.stop1Ggra9163.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 274262..274264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9163.t1Ggra9163.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 273269..274264 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9163.t1 ID=Ggra9163.t1|Name=Ggra9163.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=332bp
MQSTNKPHSKAGSQQTYELPWVEKYRPNTLDQVVGNPDVIDRMRVIAKNG
NMPNILLAGPPGCGKTTSILALARETLGSQLKNAVLELNASDDRGIDTVR
TKIKMFAQTKVTLPPGRHKIVLLDEADSMTPAAQQALRRTMELHSNTTRF
ALACNLSSKIIEPIQSRCAVVRFRRLTDEQIATRLKTVLHSEKAPYDQSG
IDAAVFTADGDMRIALNNIQSTFNGFGFVSEKNLNKVCDQPHPKVAAEFL
TLCLEKDIDKALAKVMFLVNQGYSSLDIIQTIFRVARTMKVDKEITKLNM
LREIGLIHMRMANGVTSPIQLAALASRLCQA*
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spliced messenger RNA

>Ggra9163.t1 ID=Ggra9163.t1|Name=Ggra9163.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000075_pilon:273269..274264+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTCTACCAACAAGCCGCATTCAAAGGCGGGGTCGCAGCAAACTTA
CGAACTTCCATGGGTTGAGAAGTATCGCCCCAACACGCTCGACCAAGTCG
TTGGCAACCCCGACGTCATAGACCGCATGCGCGTGATCGCCAAGAATGGA
AACATGCCCAATATCCTGCTGGCCGGGCCGCCCGGCTGCGGGAAAACCAC
CTCCATCCTGGCTCTAGCGCGAGAAACGCTTGGGAGTCAGCTCAAGAACG
CCGTGCTCGAGCTCAATGCTTCCGATGACCGAGGCATCGATACCGTGCGC
ACCAAGATCAAAATGTTTGCCCAAACCAAAGTAACTCTTCCGCCGGGTCG
TCACAAGATCGTACTCTTGGATGAGGCCGATTCTATGACGCCCGCCGCGC
AACAGGCGTTGAGACGCACAATGGAGCTGCACAGTAACACCACCCGATTC
GCCCTCGCTTGCAACCTGTCGTCCAAGATCATAGAGCCCATACAGAGCCG
CTGCGCCGTTGTACGATTTCGTCGTCTAACGGACGAGCAAATTGCCACCA
GGCTGAAGACAGTACTCCACTCTGAGAAGGCGCCATACGACCAGAGCGGC
ATTGATGCCGCTGTATTCACGGCAGACGGGGACATGCGCATAGCACTCAA
CAACATTCAGAGCACCTTTAACGGCTTTGGATTCGTCAGTGAGAAGAACC
TCAACAAGGTGTGTGATCAACCGCACCCCAAAGTAGCAGCTGAGTTCCTC
ACGTTGTGCTTGGAGAAAGATATTGACAAGGCCCTTGCGAAGGTTATGTT
TTTGGTTAACCAAGGTTACTCATCTCTTGACATCATTCAAACTATCTTTC
GCGTCGCTAGAACCATGAAGGTCGACAAGGAAATCACCAAGCTTAACATG
TTGCGAGAAATTGGTCTTATTCACATGAGAATGGCCAACGGGGTCACCTC
TCCCATTCAACTAGCTGCTCTTGCATCACGCCTATGCCAAGCGTAG
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protein sequence of Ggra9163.t1

>Ggra9163.t1 ID=Ggra9163.t1|Name=Ggra9163.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=332bp
MQSTNKPHSKAGSQQTYELPWVEKYRPNTLDQVVGNPDVIDRMRVIAKNG
NMPNILLAGPPGCGKTTSILALARETLGSQLKNAVLELNASDDRGIDTVR
TKIKMFAQTKVTLPPGRHKIVLLDEADSMTPAAQQALRRTMELHSNTTRF
ALACNLSSKIIEPIQSRCAVVRFRRLTDEQIATRLKTVLHSEKAPYDQSG
IDAAVFTADGDMRIALNNIQSTFNGFGFVSEKNLNKVCDQPHPKVAAEFL
TLCLEKDIDKALAKVMFLVNQGYSSLDIIQTIFRVARTMKVDKEITKLNM
LREIGLIHMRMANGVTSPIQLAALASRLCQA*
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mRNA from alignment at tig00000075_pilon:273269..274264+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9163.t1 ID=Ggra9163.t1|Name=Ggra9163.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000075_pilon:273269..274264+ (Gracilaria gracilis GNS1m male)
ATGCAGTCTACCAACAAGCCGCATTCAAAGGCGGGGTCGCAGCAAACTTA
CGAACTTCCATGGGTTGAGAAGTATCGCCCCAACACGCTCGACCAAGTCG
TTGGCAACCCCGACGTCATAGACCGCATGCGCGTGATCGCCAAGAATGGA
AACATGCCCAATATCCTGCTGGCCGGGCCGCCCGGCTGCGGGAAAACCAC
CTCCATCCTGGCTCTAGCGCGAGAAACGCTTGGGAGTCAGCTCAAGAACG
CCGTGCTCGAGCTCAATGCTTCCGATGACCGAGGCATCGATACCGTGCGC
ACCAAGATCAAAATGTTTGCCCAAACCAAAGTAACTCTTCCGCCGGGTCG
TCACAAGATCGTACTCTTGGATGAGGCCGATTCTATGACGCCCGCCGCGC
AACAGGCGTTGAGACGCACAATGGAGCTGCACAGTAACACCACCCGATTC
GCCCTCGCTTGCAACCTGTCGTCCAAGATCATAGAGCCCATACAGAGCCG
CTGCGCCGTTGTACGATTTCGTCGTCTAACGGACGAGCAAATTGCCACCA
GGCTGAAGACAGTACTCCACTCTGAGAAGGCGCCATACGACCAGAGCGGC
ATTGATGCCGCTGTATTCACGGCAGACGGGGACATGCGCATAGCACTCAA
CAACATTCAGAGCACCTTTAACGGCTTTGGATTCGTCAGTGAGAAGAACC
TCAACAAGGTGTGTGATCAACCGCACCCCAAAGTAGCAGCTGAGTTCCTC
ACGTTGTGCTTGGAGAAAGATATTGACAAGGCCCTTGCGAAGGTTATGTT
TTTGGTTAACCAAGGTTACTCATCTCTTGACATCATTCAAACTATCTTTC
GCGTCGCTAGAACCATGAAGGTCGACAAGGAAATCACCAAGCTTAACATG
TTGCGAGAAATTGGTCTTATTCACATGAGAATGGCCAACGGGGTCACCTC
TCCCATTCAACTAGCTGCTCTTGCATCACGCCTATGCCAAGCGTAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:273269..274264+

>Ggra9163.t1 ID=Ggra9163.t1|Name=Ggra9163.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=996bp|location=Sequence derived from alignment at tig00000075_pilon:273269..274264+ (Gracilaria gracilis GNS1m male)
ATGCAGTCTACCAACAAGCCGCATTCAAAGGCGGGGTCGCAGCAAACTTA
CGAACTTCCATGGGTTGAGAAGTATCGCCCCAACACGCTCGACCAAGTCG
TTGGCAACCCCGACGTCATAGACCGCATGCGCGTGATCGCCAAGAATGGA
AACATGCCCAATATCCTGCTGGCCGGGCCGCCCGGCTGCGGGAAAACCAC
CTCCATCCTGGCTCTAGCGCGAGAAACGCTTGGGAGTCAGCTCAAGAACG
CCGTGCTCGAGCTCAATGCTTCCGATGACCGAGGCATCGATACCGTGCGC
ACCAAGATCAAAATGTTTGCCCAAACCAAAGTAACTCTTCCGCCGGGTCG
TCACAAGATCGTACTCTTGGATGAGGCCGATTCTATGACGCCCGCCGCGC
AACAGGCGTTGAGACGCACAATGGAGCTGCACAGTAACACCACCCGATTC
GCCCTCGCTTGCAACCTGTCGTCCAAGATCATAGAGCCCATACAGAGCCG
CTGCGCCGTTGTACGATTTCGTCGTCTAACGGACGAGCAAATTGCCACCA
GGCTGAAGACAGTACTCCACTCTGAGAAGGCGCCATACGACCAGAGCGGC
ATTGATGCCGCTGTATTCACGGCAGACGGGGACATGCGCATAGCACTCAA
CAACATTCAGAGCACCTTTAACGGCTTTGGATTCGTCAGTGAGAAGAACC
TCAACAAGGTGTGTGATCAACCGCACCCCAAAGTAGCAGCTGAGTTCCTC
ACGTTGTGCTTGGAGAAAGATATTGACAAGGCCCTTGCGAAGGTTATGTT
TTTGGTTAACCAAGGTTACTCATCTCTTGACATCATTCAAACTATCTTTC
GCGTCGCTAGAACCATGAAGGTCGACAAGGAAATCACCAAGCTTAACATG
TTGCGAGAAATTGGTCTTATTCACATGAGAATGGCCAACGGGGTCACCTC
TCCCATTCAACTAGCTGCTCTTGCATCACGCCTATGCCAAGCGTAG
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