Ggra9161.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9161.t1
Unique NameGgra9161.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:269095..269847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog321332.CYB_0117
Preferred namessb
PFAMsSSB
Max annot lvl1117|Cyanobacteria
KEGG koko:K03111
KEGG Pathwayko03030,ko03430,ko03440,map03030,map03430,map03440
Evalue2.29e-19
EggNOG OGsCOG0629@1|root,COG0629@2|Bacteria,1G6JH@1117|Cyanobacteria,1H0EM@1129|Synechococcus
DescriptionPlays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
COG categoryL
BRITEko00000,ko00001,ko03029,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9161Ggra9161Gracilaria gracilis GNS1m malegenetig00000075_pilon 269095..269847 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9161.t1.start1Ggra9161.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 269095..269097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9161.t1.CDS1Ggra9161.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 269095..269847 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9161.t1.exon1Ggra9161.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 269095..269847 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9161.t1.stop1Ggra9161.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 269845..269847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9161.t1Ggra9161.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 269095..269847 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9161.t1 ID=Ggra9161.t1|Name=Ggra9161.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=251bp
MVIGNCLQSGVSRGSGAFVQCPLGLPTGLNTASIIGQCCRNSFTGFKIVH
TKRKQRPISLPVNCQNLGYEEDEGIQIDEHLDSQWDFEIDEDELVEIEAN
PSIPQINSVTLVGRLGADPLFKVTSSGAELCTFSMAVTHDYDPTDSDEDK
TSWFDIEVWGSLAKYASRAQKGVRVGVSGSLGFNCWTGRDGLEREDPIIR
ANTFEILQSRSEQRPYSRGHKENDGGRPPEPRSTSDSYPSLSGNLRDLPF
*
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spliced messenger RNA

>Ggra9161.t1 ID=Ggra9161.t1|Name=Ggra9161.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00000075_pilon:269095..269847+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTATCGGAAATTGCCTGCAGTCCGGAGTAAGCCGAGGCTCTGGCGC
TTTTGTCCAGTGTCCTCTTGGGCTCCCAACTGGACTTAATACTGCGTCTA
TTATTGGACAATGCTGCAGGAATTCATTCACAGGGTTTAAGATAGTACAT
ACCAAACGCAAACAGCGTCCCATCTCACTTCCTGTTAACTGTCAGAATCT
CGGTTATGAGGAAGACGAAGGTATACAAATCGACGAGCATCTTGATTCAC
AGTGGGATTTTGAAATAGACGAAGATGAGCTCGTGGAGATTGAGGCCAAC
CCGTCCATTCCGCAAATTAACTCAGTCACCCTTGTGGGTCGACTTGGTGC
TGATCCGTTGTTCAAAGTAACCTCTTCGGGCGCTGAGTTGTGTACATTTT
CCATGGCCGTGACCCATGATTATGATCCCACTGATAGTGACGAAGACAAG
ACAAGTTGGTTTGATATTGAAGTTTGGGGAAGTTTGGCTAAATATGCTTC
CAGGGCGCAAAAGGGGGTTCGTGTTGGAGTTAGCGGAAGTCTAGGGTTCA
ACTGCTGGACTGGAAGGGACGGCTTGGAGAGAGAGGATCCAATCATTAGA
GCAAATACTTTCGAAATCTTACAATCTCGTTCAGAACAACGACCCTATTC
AAGAGGTCACAAGGAGAATGATGGTGGTCGGCCACCAGAACCAAGATCCA
CAAGTGATTCGTATCCAAGCCTTAGTGGAAACCTTCGAGACCTTCCATTC
TAG
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protein sequence of Ggra9161.t1

>Ggra9161.t1 ID=Ggra9161.t1|Name=Ggra9161.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=251bp
MVIGNCLQSGVSRGSGAFVQCPLGLPTGLNTASIIGQCCRNSFTGFKIVH
TKRKQRPISLPVNCQNLGYEEDEGIQIDEHLDSQWDFEIDEDELVEIEAN
PSIPQINSVTLVGRLGADPLFKVTSSGAELCTFSMAVTHDYDPTDSDEDK
TSWFDIEVWGSLAKYASRAQKGVRVGVSGSLGFNCWTGRDGLEREDPIIR
ANTFEILQSRSEQRPYSRGHKENDGGRPPEPRSTSDSYPSLSGNLRDLPF
*
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mRNA from alignment at tig00000075_pilon:269095..269847+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9161.t1 ID=Ggra9161.t1|Name=Ggra9161.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00000075_pilon:269095..269847+ (Gracilaria gracilis GNS1m male)
ATGGTTATCGGAAATTGCCTGCAGTCCGGAGTAAGCCGAGGCTCTGGCGC
TTTTGTCCAGTGTCCTCTTGGGCTCCCAACTGGACTTAATACTGCGTCTA
TTATTGGACAATGCTGCAGGAATTCATTCACAGGGTTTAAGATAGTACAT
ACCAAACGCAAACAGCGTCCCATCTCACTTCCTGTTAACTGTCAGAATCT
CGGTTATGAGGAAGACGAAGGTATACAAATCGACGAGCATCTTGATTCAC
AGTGGGATTTTGAAATAGACGAAGATGAGCTCGTGGAGATTGAGGCCAAC
CCGTCCATTCCGCAAATTAACTCAGTCACCCTTGTGGGTCGACTTGGTGC
TGATCCGTTGTTCAAAGTAACCTCTTCGGGCGCTGAGTTGTGTACATTTT
CCATGGCCGTGACCCATGATTATGATCCCACTGATAGTGACGAAGACAAG
ACAAGTTGGTTTGATATTGAAGTTTGGGGAAGTTTGGCTAAATATGCTTC
CAGGGCGCAAAAGGGGGTTCGTGTTGGAGTTAGCGGAAGTCTAGGGTTCA
ACTGCTGGACTGGAAGGGACGGCTTGGAGAGAGAGGATCCAATCATTAGA
GCAAATACTTTCGAAATCTTACAATCTCGTTCAGAACAACGACCCTATTC
AAGAGGTCACAAGGAGAATGATGGTGGTCGGCCACCAGAACCAAGATCCA
CAAGTGATTCGTATCCAAGCCTTAGTGGAAACCTTCGAGACCTTCCATTC
TAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:269095..269847+

>Ggra9161.t1 ID=Ggra9161.t1|Name=Ggra9161.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=753bp|location=Sequence derived from alignment at tig00000075_pilon:269095..269847+ (Gracilaria gracilis GNS1m male)
ATGGTTATCGGAAATTGCCTGCAGTCCGGAGTAAGCCGAGGCTCTGGCGC
TTTTGTCCAGTGTCCTCTTGGGCTCCCAACTGGACTTAATACTGCGTCTA
TTATTGGACAATGCTGCAGGAATTCATTCACAGGGTTTAAGATAGTACAT
ACCAAACGCAAACAGCGTCCCATCTCACTTCCTGTTAACTGTCAGAATCT
CGGTTATGAGGAAGACGAAGGTATACAAATCGACGAGCATCTTGATTCAC
AGTGGGATTTTGAAATAGACGAAGATGAGCTCGTGGAGATTGAGGCCAAC
CCGTCCATTCCGCAAATTAACTCAGTCACCCTTGTGGGTCGACTTGGTGC
TGATCCGTTGTTCAAAGTAACCTCTTCGGGCGCTGAGTTGTGTACATTTT
CCATGGCCGTGACCCATGATTATGATCCCACTGATAGTGACGAAGACAAG
ACAAGTTGGTTTGATATTGAAGTTTGGGGAAGTTTGGCTAAATATGCTTC
CAGGGCGCAAAAGGGGGTTCGTGTTGGAGTTAGCGGAAGTCTAGGGTTCA
ACTGCTGGACTGGAAGGGACGGCTTGGAGAGAGAGGATCCAATCATTAGA
GCAAATACTTTCGAAATCTTACAATCTCGTTCAGAACAACGACCCTATTC
AAGAGGTCACAAGGAGAATGATGGTGGTCGGCCACCAGAACCAAGATCCA
CAAGTGATTCGTATCCAAGCCTTAGTGGAAACCTTCGAGACCTTCCATTC
TAG
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