Ggra916.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra916.t1
Unique NameGgra916.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:376653..377249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog244447.XP_008327778.1
PFAMsTIMP
Max annot lvl33208|Metazoa
Evalue0.000225
EggNOG OGsKOG4745@1|root,KOG4745@2759|Eukaryota,39ANF@33154|Opisthokonta,3B9NT@33208|Metazoa,3CXRT@33213|Bilateria,4816B@7711|Chordata,48WKF@7742|Vertebrata
Descriptioninhibitor
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra916Ggra916Gracilaria gracilis GNS1m malegenetig00000049_pilon 376653..377249 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra916.t1.stop1Ggra916.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 376653..376655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra916.t1.CDS1Ggra916.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 376653..377249 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra916.t1.exon1Ggra916.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 376653..377249 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra916.t1.start1Ggra916.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 377247..377249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra916.t1Ggra916.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 376653..377249 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra916.t1 ID=Ggra916.t1|Name=Ggra916.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=199bp
MKLLYGALLLACSLLVANACSCLPTTLKGDFFAPQTQRVIKGKVLFVTPG
GSGPGASRFFFIKPEIVYKGCNTPSFIVATSPVQSATCGVNLQRGTSYIL
PLSDEQTPSINLCQFIRKFDSLSDEDKEFLSTRTVCCGGSCKCADISTPM
VNCFRQPCSPPEQPPCEEAAQCVDNYCGECFAEWFTDEGRYACLPSPF*
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spliced messenger RNA

>Ggra916.t1 ID=Ggra916.t1|Name=Ggra916.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000049_pilon:376653..377249- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTTTTGTACGGTGCTTTGCTTCTCGCATGCTCGTTGCTGGTGGC
AAATGCCTGCTCGTGCCTCCCTACCACCCTCAAAGGCGATTTCTTTGCGC
CACAGACCCAGAGAGTTATCAAGGGAAAGGTGTTATTCGTCACCCCCGGT
GGTAGCGGACCAGGTGCCAGCCGTTTCTTCTTTATCAAGCCTGAGATTGT
GTACAAGGGATGTAATACTCCATCGTTCATCGTCGCGACGTCTCCCGTTC
AATCGGCCACATGTGGTGTCAATCTCCAAAGGGGCACGTCTTACATTCTA
CCGTTGTCTGACGAACAGACCCCGTCGATCAATCTGTGCCAGTTCATTCG
CAAATTCGACTCGCTATCGGATGAGGACAAGGAGTTCTTGAGCACTCGTA
CGGTGTGCTGTGGTGGCAGCTGTAAGTGTGCGGATATTAGCACACCCATG
GTGAACTGTTTTAGACAGCCGTGCTCGCCGCCCGAACAGCCTCCCTGTGA
AGAGGCTGCGCAGTGTGTGGATAACTACTGCGGCGAATGTTTCGCTGAAT
GGTTCACGGACGAAGGTCGCTATGCATGTCTTCCGTCTCCGTTCTGA
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protein sequence of Ggra916.t1

>Ggra916.t1 ID=Ggra916.t1|Name=Ggra916.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=199bp
MKLLYGALLLACSLLVANACSCLPTTLKGDFFAPQTQRVIKGKVLFVTPG
GSGPGASRFFFIKPEIVYKGCNTPSFIVATSPVQSATCGVNLQRGTSYIL
PLSDEQTPSINLCQFIRKFDSLSDEDKEFLSTRTVCCGGSCKCADISTPM
VNCFRQPCSPPEQPPCEEAAQCVDNYCGECFAEWFTDEGRYACLPSPF*
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mRNA from alignment at tig00000049_pilon:376653..377249-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra916.t1 ID=Ggra916.t1|Name=Ggra916.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000049_pilon:376653..377249- (Gracilaria gracilis GNS1m male)
ATGAAGCTTTTGTACGGTGCTTTGCTTCTCGCATGCTCGTTGCTGGTGGC
AAATGCCTGCTCGTGCCTCCCTACCACCCTCAAAGGCGATTTCTTTGCGC
CACAGACCCAGAGAGTTATCAAGGGAAAGGTGTTATTCGTCACCCCCGGT
GGTAGCGGACCAGGTGCCAGCCGTTTCTTCTTTATCAAGCCTGAGATTGT
GTACAAGGGATGTAATACTCCATCGTTCATCGTCGCGACGTCTCCCGTTC
AATCGGCCACATGTGGTGTCAATCTCCAAAGGGGCACGTCTTACATTCTA
CCGTTGTCTGACGAACAGACCCCGTCGATCAATCTGTGCCAGTTCATTCG
CAAATTCGACTCGCTATCGGATGAGGACAAGGAGTTCTTGAGCACTCGTA
CGGTGTGCTGTGGTGGCAGCTGTAAGTGTGCGGATATTAGCACACCCATG
GTGAACTGTTTTAGACAGCCGTGCTCGCCGCCCGAACAGCCTCCCTGTGA
AGAGGCTGCGCAGTGTGTGGATAACTACTGCGGCGAATGTTTCGCTGAAT
GGTTCACGGACGAAGGTCGCTATGCATGTCTTCCGTCTCCGTTCTGA
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Coding sequence (CDS) from alignment at tig00000049_pilon:376653..377249-

>Ggra916.t1 ID=Ggra916.t1|Name=Ggra916.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=597bp|location=Sequence derived from alignment at tig00000049_pilon:376653..377249- (Gracilaria gracilis GNS1m male)
ATGAAGCTTTTGTACGGTGCTTTGCTTCTCGCATGCTCGTTGCTGGTGGC
AAATGCCTGCTCGTGCCTCCCTACCACCCTCAAAGGCGATTTCTTTGCGC
CACAGACCCAGAGAGTTATCAAGGGAAAGGTGTTATTCGTCACCCCCGGT
GGTAGCGGACCAGGTGCCAGCCGTTTCTTCTTTATCAAGCCTGAGATTGT
GTACAAGGGATGTAATACTCCATCGTTCATCGTCGCGACGTCTCCCGTTC
AATCGGCCACATGTGGTGTCAATCTCCAAAGGGGCACGTCTTACATTCTA
CCGTTGTCTGACGAACAGACCCCGTCGATCAATCTGTGCCAGTTCATTCG
CAAATTCGACTCGCTATCGGATGAGGACAAGGAGTTCTTGAGCACTCGTA
CGGTGTGCTGTGGTGGCAGCTGTAAGTGTGCGGATATTAGCACACCCATG
GTGAACTGTTTTAGACAGCCGTGCTCGCCGCCCGAACAGCCTCCCTGTGA
AGAGGCTGCGCAGTGTGTGGATAACTACTGCGGCGAATGTTTCGCTGAAT
GGTTCACGGACGAAGGTCGCTATGCATGTCTTCCGTCTCCGTTCTGA
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