Ggra9155.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9155.t1
Unique NameGgra9155.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:258098..258817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7994.ENSAMXP00000005448
Preferred nameTPRKB
PFAMsCGI-121
Max annot lvl33208|Metazoa
KEGG koko:K15901
GOsGO:0000408,GO:0002949,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0019899,GO:0019900,GO:0019901,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360
Evalue8.52e-28
EggNOG OGsKOG4066@1|root,KOG4066@2759|Eukaryota,3A2H2@33154|Opisthokonta,3BMN2@33208|Metazoa,3D5RM@33213|Bilateria,489AK@7711|Chordata,4985J@7742|Vertebrata,4A344@7898|Actinopterygii
DescriptionBelongs to the CGI121 TPRKB family
COG categoryK
BRITEko00000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9155Ggra9155Gracilaria gracilis GNS1m malegenetig00000075_pilon 258098..258817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9155.t1Ggra9155.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 258098..258817 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9155.t1.start1Ggra9155.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 258098..258100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9155.t1.CDS1Ggra9155.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 258098..258232 +
Ggra9155.t1.CDS2Ggra9155.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 258342..258393 +
Ggra9155.t1.CDS3Ggra9155.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000075_pilon 258483..258817 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9155.t1.exon1Ggra9155.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 258098..258232 +
Ggra9155.t1.exon2Ggra9155.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 258342..258393 +
Ggra9155.t1.exon3Ggra9155.t1.exon3Gracilaria gracilis GNS1m maleexontig00000075_pilon 258483..258817 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9155.t1.intron1Ggra9155.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 258233..258341 +
Ggra9155.t1.intron2Ggra9155.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000075_pilon 258394..258482 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9155.t1.stop1Ggra9155.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 258815..258817 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9155.t1 ID=Ggra9155.t1|Name=Ggra9155.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=174bp
MRYKLHSGIGGSAEILLFQNVTNAKDVLPLILNGEIPSAFLQARLIPDLF
LALIAVSKAVQDEHSSSMSTRNLFTEIIYNLSGSRNISKALKTFGIEDDT
SDILVIVPNPQNDVLEKIRNYIKAEEKPATGNCMRHIVDHNAVKKVYGIS
EKELECGTLVDSVVTRMACRDVK*
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spliced messenger RNA

>Ggra9155.t1 ID=Ggra9155.t1|Name=Ggra9155.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00000075_pilon:258098..258817+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTACAAGCTCCATTCCGGGATTGGCGGTTCAGCGGAAATTCTGCT
CTTTCAGAATGTAACCAACGCGAAGGACGTTCTCCCTCTCATCCTGAACG
GTGAGATACCCTCTGCGTTTCTTCAAGCTCGATTGATTCCAGATTTGTTC
CTTGCTCTAATAGCTGTTTCTAAAGCCGTTCAGGATGAGCATTCTTCTTC
AATGAGTACGCGCAACCTGTTCACTGAAATCATATATAATCTGTCCGGAA
GCAGAAACATTAGCAAAGCGCTCAAAACTTTTGGCATTGAAGATGATACA
TCTGATATTCTGGTGATTGTTCCCAATCCCCAGAATGATGTACTAGAGAA
GATCCGCAACTATATCAAGGCTGAGGAGAAGCCAGCAACCGGAAACTGCA
TGAGGCATATCGTGGACCACAACGCAGTGAAAAAAGTATATGGTATTTCG
GAAAAGGAGTTAGAATGCGGAACACTTGTGGACTCAGTTGTCACGAGAAT
GGCCTGCAGAGATGTGAAATAG
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protein sequence of Ggra9155.t1

>Ggra9155.t1 ID=Ggra9155.t1|Name=Ggra9155.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=174bp
MRYKLHSGIGGSAEILLFQNVTNAKDVLPLILNGEIPSAFLQARLIPDLF
LALIAVSKAVQDEHSSSMSTRNLFTEIIYNLSGSRNISKALKTFGIEDDT
SDILVIVPNPQNDVLEKIRNYIKAEEKPATGNCMRHIVDHNAVKKVYGIS
EKELECGTLVDSVVTRMACRDVK*
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mRNA from alignment at tig00000075_pilon:258098..258817+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9155.t1 ID=Ggra9155.t1|Name=Ggra9155.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00000075_pilon:258098..258817+ (Gracilaria gracilis GNS1m male)
ATGCGCTACAAGCTCCATTCCGGGATTGGCGGTTCAGCGGAAATTCTGCT
CTTTCAGAATGTAACCAACGCGAAGGACGTTCTCCCTCTCATCCTGAACG
GTGAGATACCCTCTGCGTTTCTTCAAGCTCGATTGGTATGCTACTTGTGA
TTTTTCAGCCGAGCCTTGAAATCAAAACTAACTATCGTGTGACATATTTG
CATCATGCCTTCACGATTGCTCTACATCTTTGCCGATTTTGAAGATTCCA
GATTTGTTCCTTGCTCTAATAGCTGTTTCTAAAGCCGTTCAGGATGGTAA
GTCCTTCATGGAAAGCTAAAGGGGTTATGCTCCATTTATTCTAACCTATG
TCTTCTTCCAATCATGTTTTCTAAATCCCAAAAAGAGCATTCTTCTTCAA
TGAGTACGCGCAACCTGTTCACTGAAATCATATATAATCTGTCCGGAAGC
AGAAACATTAGCAAAGCGCTCAAAACTTTTGGCATTGAAGATGATACATC
TGATATTCTGGTGATTGTTCCCAATCCCCAGAATGATGTACTAGAGAAGA
TCCGCAACTATATCAAGGCTGAGGAGAAGCCAGCAACCGGAAACTGCATG
AGGCATATCGTGGACCACAACGCAGTGAAAAAAGTATATGGTATTTCGGA
AAAGGAGTTAGAATGCGGAACACTTGTGGACTCAGTTGTCACGAGAATGG
CCTGCAGAGATGTGAAATAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:258098..258817+

>Ggra9155.t1 ID=Ggra9155.t1|Name=Ggra9155.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=522bp|location=Sequence derived from alignment at tig00000075_pilon:258098..258817+ (Gracilaria gracilis GNS1m male)
ATGCGCTACAAGCTCCATTCCGGGATTGGCGGTTCAGCGGAAATTCTGCT
CTTTCAGAATGTAACCAACGCGAAGGACGTTCTCCCTCTCATCCTGAACG
GTGAGATACCCTCTGCGTTTCTTCAAGCTCGATTGATTCCAGATTTGTTC
CTTGCTCTAATAGCTGTTTCTAAAGCCGTTCAGGATGAGCATTCTTCTTC
AATGAGTACGCGCAACCTGTTCACTGAAATCATATATAATCTGTCCGGAA
GCAGAAACATTAGCAAAGCGCTCAAAACTTTTGGCATTGAAGATGATACA
TCTGATATTCTGGTGATTGTTCCCAATCCCCAGAATGATGTACTAGAGAA
GATCCGCAACTATATCAAGGCTGAGGAGAAGCCAGCAACCGGAAACTGCA
TGAGGCATATCGTGGACCACAACGCAGTGAAAAAAGTATATGGTATTTCG
GAAAAGGAGTTAGAATGCGGAACACTTGTGGACTCAGTTGTCACGAGAAT
GGCCTGCAGAGATGTGAAATAG
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