Ggra9151.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9151.t1
Unique NameGgra9151.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:129246..130142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9151Ggra9151Gracilaria gracilis GNS1m malegenetig00000075_pilon 129246..130142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9151.t1Ggra9151.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 129246..130142 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9151.t1.stop1Ggra9151.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 129246..129248 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9151.t1.CDS1Ggra9151.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 129246..129829 -
Ggra9151.t1.CDS2Ggra9151.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 129941..130142 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9151.t1.exon1Ggra9151.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 129246..129829 -
Ggra9151.t1.exon2Ggra9151.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 129941..130142 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9151.t1.intron1Ggra9151.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 129830..129940 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9151.t1.start1Ggra9151.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 130140..130142 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9151.t1 ID=Ggra9151.t1|Name=Ggra9151.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=262bp
MPPTKRPRLSDDSPAVRRLHQMFDCGELTGDEAASDVQNMDRLFEPFLPA
TFKNKYQKIRDLKCNEDGPSMANKAVFNVDYDETEEKNDLETGLEEQIAK
KSKPELLEFFSLVLKSMWDHEVTMTKNESLAILLPSRVLKSAIHSHVVKN
GKMLELVVDWPDMMTDSPKLFKFSLAKQFDPLKPYNPKIGGFNKALKELR
KERSQKIQSFCAIDLPFVVDTYVPLKQVINFGDGLLVLYIELKAPDDKYA
KKDDIDEVIVN*
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spliced messenger RNA

>Ggra9151.t1 ID=Ggra9151.t1|Name=Ggra9151.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000075_pilon:129246..130142- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCAACAAAAAGACCTCGTTTAAGTGACGATTCTCCTGCCGTCCG
CCGTCTACATCAAATGTTCGATTGTGGAGAACTAACTGGTGATGAAGCAG
CATCAGATGTACAGAACATGGATCGCCTTTTCGAACCCTTTCTACCTGCA
ACTTTCAAGAATAAGTACCAAAAAATTCGAGACCTGAAGTGCAATGAAGA
TGGGCCCTCGATGGCAAACAAAGCCGTTTTTAATGTCGATTATGATGAAA
CAGAGGAGAAGAATGACTTGGAAACTGGTTTGGAAGAACAAATAGCCAAG
AAGAGCAAGCCCGAGCTTTTAGAATTCTTTTCTCTGGTTTTAAAATCTAT
GTGGGACCATGAGGTGACAATGACTAAGAATGAAAGTTTGGCTATTTTGT
TGCCATCCAGAGTTTTAAAATCAGCAATCCACAGCCATGTTGTAAAGAAC
GGAAAGATGTTGGAATTGGTTGTAGACTGGCCTGATATGATGACGGATTC
TCCCAAGCTGTTCAAGTTTTCTCTTGCAAAGCAGTTTGATCCTCTAAAAC
CATATAATCCAAAAATTGGGGGGTTCAATAAGGCGTTGAAAGAGTTACGA
AAAGAGCGTTCTCAAAAGATTCAGTCTTTTTGTGCCATTGATCTACCTTT
TGTTGTGGATACTTATGTTCCTTTGAAGCAAGTTATTAACTTTGGTGACG
GGCTACTGGTGCTTTACATTGAATTGAAGGCGCCAGATGACAAGTACGCA
AAAAAGGATGATATTGATGAAGTTATTGTTAATTAG
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protein sequence of Ggra9151.t1

>Ggra9151.t1 ID=Ggra9151.t1|Name=Ggra9151.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=262bp
MPPTKRPRLSDDSPAVRRLHQMFDCGELTGDEAASDVQNMDRLFEPFLPA
TFKNKYQKIRDLKCNEDGPSMANKAVFNVDYDETEEKNDLETGLEEQIAK
KSKPELLEFFSLVLKSMWDHEVTMTKNESLAILLPSRVLKSAIHSHVVKN
GKMLELVVDWPDMMTDSPKLFKFSLAKQFDPLKPYNPKIGGFNKALKELR
KERSQKIQSFCAIDLPFVVDTYVPLKQVINFGDGLLVLYIELKAPDDKYA
KKDDIDEVIVN*
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mRNA from alignment at tig00000075_pilon:129246..130142-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9151.t1 ID=Ggra9151.t1|Name=Ggra9151.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00000075_pilon:129246..130142- (Gracilaria gracilis GNS1m male)
ATGCCGCCAACAAAAAGACCTCGTTTAAGTGACGATTCTCCTGCCGTCCG
CCGTCTACATCAAATGTTCGATTGTGGAGAACTAACTGGTGATGAAGCAG
CATCAGATGTACAGAACATGGATCGCCTTTTCGAACCCTTTCTACCTGCA
ACTTTCAAGAATAAGTACCAAAAAATTCGAGACCTGAAGTGCAATGAAGA
TGGTAAGAATATTTCTTTGTTTTGCTGGTATACGTAATTTTGGTTCCTCT
CGAAGCTACTAACATTTGTCGAAGACCGAGTACGCCGTTTGTTGAAACCA
AGATGCTCCGCAGGGCCCTCGATGGCAAACAAAGCCGTTTTTAATGTCGA
TTATGATGAAACAGAGGAGAAGAATGACTTGGAAACTGGTTTGGAAGAAC
AAATAGCCAAGAAGAGCAAGCCCGAGCTTTTAGAATTCTTTTCTCTGGTT
TTAAAATCTATGTGGGACCATGAGGTGACAATGACTAAGAATGAAAGTTT
GGCTATTTTGTTGCCATCCAGAGTTTTAAAATCAGCAATCCACAGCCATG
TTGTAAAGAACGGAAAGATGTTGGAATTGGTTGTAGACTGGCCTGATATG
ATGACGGATTCTCCCAAGCTGTTCAAGTTTTCTCTTGCAAAGCAGTTTGA
TCCTCTAAAACCATATAATCCAAAAATTGGGGGGTTCAATAAGGCGTTGA
AAGAGTTACGAAAAGAGCGTTCTCAAAAGATTCAGTCTTTTTGTGCCATT
GATCTACCTTTTGTTGTGGATACTTATGTTCCTTTGAAGCAAGTTATTAA
CTTTGGTGACGGGCTACTGGTGCTTTACATTGAATTGAAGGCGCCAGATG
ACAAGTACGCAAAAAAGGATGATATTGATGAAGTTATTGTTAATTAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:129246..130142-

>Ggra9151.t1 ID=Ggra9151.t1|Name=Ggra9151.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=786bp|location=Sequence derived from alignment at tig00000075_pilon:129246..130142- (Gracilaria gracilis GNS1m male)
ATGCCGCCAACAAAAAGACCTCGTTTAAGTGACGATTCTCCTGCCGTCCG
CCGTCTACATCAAATGTTCGATTGTGGAGAACTAACTGGTGATGAAGCAG
CATCAGATGTACAGAACATGGATCGCCTTTTCGAACCCTTTCTACCTGCA
ACTTTCAAGAATAAGTACCAAAAAATTCGAGACCTGAAGTGCAATGAAGA
TGGGCCCTCGATGGCAAACAAAGCCGTTTTTAATGTCGATTATGATGAAA
CAGAGGAGAAGAATGACTTGGAAACTGGTTTGGAAGAACAAATAGCCAAG
AAGAGCAAGCCCGAGCTTTTAGAATTCTTTTCTCTGGTTTTAAAATCTAT
GTGGGACCATGAGGTGACAATGACTAAGAATGAAAGTTTGGCTATTTTGT
TGCCATCCAGAGTTTTAAAATCAGCAATCCACAGCCATGTTGTAAAGAAC
GGAAAGATGTTGGAATTGGTTGTAGACTGGCCTGATATGATGACGGATTC
TCCCAAGCTGTTCAAGTTTTCTCTTGCAAAGCAGTTTGATCCTCTAAAAC
CATATAATCCAAAAATTGGGGGGTTCAATAAGGCGTTGAAAGAGTTACGA
AAAGAGCGTTCTCAAAAGATTCAGTCTTTTTGTGCCATTGATCTACCTTT
TGTTGTGGATACTTATGTTCCTTTGAAGCAAGTTATTAACTTTGGTGACG
GGCTACTGGTGCTTTACATTGAATTGAAGGCGCCAGATGACAAGTACGCA
AAAAAGGATGATATTGATGAAGTTATTGTTAATTAG
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