Ggra9150.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9150.t1
Unique NameGgra9150.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length154
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:100666..101127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9150Ggra9150Gracilaria gracilis GNS1m malegenetig00000075_pilon 100666..101127 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9150.t1.start1Ggra9150.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 100666..100668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9150.t1.CDS1Ggra9150.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 100666..101127 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9150.t1.exon1Ggra9150.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 100666..101127 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9150.t1.stop1Ggra9150.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 101125..101127 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9150.t1Ggra9150.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 100666..101127 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9150.t1 ID=Ggra9150.t1|Name=Ggra9150.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=154bp
MEQPQQYEPETHTACPNTNTPGSPTPSRPPSRPPSLTGRPGFSPRPLIRK
RSSPPPKNGDDLMSIYKMTLLEEQKRRAEEHERRMQEREKERTRREEERK
RREEERAAERERREEDNRRQDRFVQMLMVMAFGGKGNDVPCSLFPDPHEN
TGT*
back to top

spliced messenger RNA

>Ggra9150.t1 ID=Ggra9150.t1|Name=Ggra9150.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp|location=Sequence derived from alignment at tig00000075_pilon:100666..101127+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCAACCACAACAGTACGAACCTGAGACACACACTGCATGCCCTAA
CACGAACACACCGGGCAGCCCCACGCCCAGCAGGCCACCCAGCAGACCAC
CATCACTAACTGGCAGGCCAGGATTCTCACCACGACCTTTGATTAGAAAG
CGTTCGTCACCCCCGCCAAAGAATGGCGATGATCTCATGTCAATTTACAA
GATGACCCTGCTCGAAGAGCAGAAGCGCAGAGCTGAGGAGCACGAGCGCC
GGATGCAAGAACGAGAGAAGGAGCGAACACGACGAGAGGAAGAACGGAAG
AGACGTGAAGAAGAACGAGCAGCAGAGCGCGAGCGTCGTGAGGAGGACAA
TCGCCGTCAGGATAGATTTGTGCAGATGCTAATGGTAATGGCCTTTGGTG
GAAAGGGCAACGATGTGCCTTGTTCCCTTTTCCCAGACCCCCACGAAAAC
ACCGGGACTTAA
back to top

protein sequence of Ggra9150.t1

>Ggra9150.t1 ID=Ggra9150.t1|Name=Ggra9150.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=154bp
MEQPQQYEPETHTACPNTNTPGSPTPSRPPSRPPSLTGRPGFSPRPLIRK
RSSPPPKNGDDLMSIYKMTLLEEQKRRAEEHERRMQEREKERTRREEERK
RREEERAAERERREEDNRRQDRFVQMLMVMAFGGKGNDVPCSLFPDPHEN
TGT*
back to top

mRNA from alignment at tig00000075_pilon:100666..101127+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9150.t1 ID=Ggra9150.t1|Name=Ggra9150.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp|location=Sequence derived from alignment at tig00000075_pilon:100666..101127+ (Gracilaria gracilis GNS1m male)
ATGGAGCAACCACAACAGTACGAACCTGAGACACACACTGCATGCCCTAA
CACGAACACACCGGGCAGCCCCACGCCCAGCAGGCCACCCAGCAGACCAC
CATCACTAACTGGCAGGCCAGGATTCTCACCACGACCTTTGATTAGAAAG
CGTTCGTCACCCCCGCCAAAGAATGGCGATGATCTCATGTCAATTTACAA
GATGACCCTGCTCGAAGAGCAGAAGCGCAGAGCTGAGGAGCACGAGCGCC
GGATGCAAGAACGAGAGAAGGAGCGAACACGACGAGAGGAAGAACGGAAG
AGACGTGAAGAAGAACGAGCAGCAGAGCGCGAGCGTCGTGAGGAGGACAA
TCGCCGTCAGGATAGATTTGTGCAGATGCTAATGGTAATGGCCTTTGGTG
GAAAGGGCAACGATGTGCCTTGTTCCCTTTTCCCAGACCCCCACGAAAAC
ACCGGGACTTAA
back to top

Coding sequence (CDS) from alignment at tig00000075_pilon:100666..101127+

>Ggra9150.t1 ID=Ggra9150.t1|Name=Ggra9150.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=462bp|location=Sequence derived from alignment at tig00000075_pilon:100666..101127+ (Gracilaria gracilis GNS1m male)
ATGGAGCAACCACAACAGTACGAACCTGAGACACACACTGCATGCCCTAA
CACGAACACACCGGGCAGCCCCACGCCCAGCAGGCCACCCAGCAGACCAC
CATCACTAACTGGCAGGCCAGGATTCTCACCACGACCTTTGATTAGAAAG
CGTTCGTCACCCCCGCCAAAGAATGGCGATGATCTCATGTCAATTTACAA
GATGACCCTGCTCGAAGAGCAGAAGCGCAGAGCTGAGGAGCACGAGCGCC
GGATGCAAGAACGAGAGAAGGAGCGAACACGACGAGAGGAAGAACGGAAG
AGACGTGAAGAAGAACGAGCAGCAGAGCGCGAGCGTCGTGAGGAGGACAA
TCGCCGTCAGGATAGATTTGTGCAGATGCTAATGGTAATGGCCTTTGGTG
GAAAGGGCAACGATGTGCCTTGTTCCCTTTTCCCAGACCCCCACGAAAAC
ACCGGGACTTAA
back to top