Ggra9149.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9149.t1
Unique NameGgra9149.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length306
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:97629..98665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008865755.1
PFAMsELMO_CED12,zf-C2H2_jaz
Max annot lvl2759|Eukaryota
KEGG koko:K14821
Evalue9.52e-44
EggNOG OGsKOG2998@1|root,KOG2998@2759|Eukaryota
DescriptionELMO domain-containing protein
COG categoryZ
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9149Ggra9149Gracilaria gracilis GNS1m malegenetig00000075_pilon 97629..98665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9149.t1Ggra9149.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 97629..98665 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9149.t1.start1Ggra9149.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 97629..97631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9149.t1.CDS1Ggra9149.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 97629..97661 +
Ggra9149.t1.CDS2Ggra9149.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 97781..98665 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9149.t1.exon1Ggra9149.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 97629..97661 +
Ggra9149.t1.exon2Ggra9149.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 97781..98665 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9149.t1.intron1Ggra9149.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 97662..97780 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9149.t1.stop1Ggra9149.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 98663..98665 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9149.t1 ID=Ggra9149.t1|Name=Ggra9149.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=306bp
MVFPCFALSRLIHAIRLFLHRMVKRARRLVTGHTQVARICGAGTSTVQPH
TSAMSAALWRECSSSKQLASLLTTLQRADFDVQHVVSSICEHKNINPDSQ
VARNLCACVTDIKSVNRLIHSVRSMSALAFDSENDAHEQMLERLWQLLLP
HVQRAGGRYSKDWGRIGFQQADPASDFRGGGILALHQLLYISQQRQTVAR
RMIVEPAQELQRYPWACVGINLTMEALKILEARKIDHSLYGKSLEQGLAV
FHELYCDMFEILHRTWVTANPDNVLAFPPVMKQVICDIDQEISTTGSLVP
PPSEA*
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spliced messenger RNA

>Ggra9149.t1 ID=Ggra9149.t1|Name=Ggra9149.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00000075_pilon:97629..98665+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTTTCCCTGCTTCGCGCTTAGTCGTCTGATACACGCCATTCGATT
GTTCTTGCACAGAATGGTAAAGAGGGCTCGAAGATTGGTTACGGGACACA
CGCAGGTTGCACGAATATGCGGCGCGGGTACCTCCACTGTTCAGCCACAC
ACGTCCGCCATGTCCGCAGCTTTGTGGCGTGAATGTTCCTCCTCGAAACA
GCTTGCTTCTTTGCTCACCACGTTGCAACGCGCTGACTTTGACGTGCAGC
ATGTCGTGTCTTCCATCTGTGAGCACAAGAATATCAACCCCGACTCTCAA
GTGGCTCGCAATCTATGTGCCTGCGTCACCGACATCAAATCCGTCAATCG
ACTCATTCATAGCGTGCGTTCCATGAGTGCGCTAGCGTTTGACAGTGAGA
ACGACGCGCACGAACAAATGTTGGAGAGGTTGTGGCAGCTGTTATTGCCG
CACGTGCAGAGAGCTGGGGGGCGTTATTCAAAGGATTGGGGTCGTATTGG
CTTCCAACAAGCCGACCCTGCCAGCGATTTCAGAGGCGGTGGAATTCTTG
CCTTGCATCAATTGCTGTACATTTCGCAACAGCGACAGACGGTGGCGCGA
CGAATGATTGTAGAACCCGCGCAGGAGCTTCAACGATATCCGTGGGCGTG
TGTTGGAATCAATCTGACCATGGAGGCGTTGAAGATTTTGGAGGCGAGAA
AGATCGATCATAGCTTGTATGGAAAATCGCTGGAACAAGGCTTGGCTGTG
TTTCATGAATTGTACTGCGACATGTTTGAAATCTTGCATCGCACATGGGT
TACGGCTAATCCTGACAACGTTCTAGCCTTTCCTCCTGTGATGAAACAGG
TCATTTGTGACATAGATCAAGAGATATCCACCACGGGTTCGTTGGTACCG
CCACCCTCTGAGGCATAG
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protein sequence of Ggra9149.t1

>Ggra9149.t1 ID=Ggra9149.t1|Name=Ggra9149.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=306bp
MVFPCFALSRLIHAIRLFLHRMVKRARRLVTGHTQVARICGAGTSTVQPH
TSAMSAALWRECSSSKQLASLLTTLQRADFDVQHVVSSICEHKNINPDSQ
VARNLCACVTDIKSVNRLIHSVRSMSALAFDSENDAHEQMLERLWQLLLP
HVQRAGGRYSKDWGRIGFQQADPASDFRGGGILALHQLLYISQQRQTVAR
RMIVEPAQELQRYPWACVGINLTMEALKILEARKIDHSLYGKSLEQGLAV
FHELYCDMFEILHRTWVTANPDNVLAFPPVMKQVICDIDQEISTTGSLVP
PPSEA*
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mRNA from alignment at tig00000075_pilon:97629..98665+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9149.t1 ID=Ggra9149.t1|Name=Ggra9149.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1037bp|location=Sequence derived from alignment at tig00000075_pilon:97629..98665+ (Gracilaria gracilis GNS1m male)
ATGGTGTTTCCCTGCTTCGCGCTTAGTCGTCTGGTACGTATCTATTCGCG
CACAAACAGCCCAGCCACATACCACGACCACGCCGTGTTCTCTGACATCG
CCCCGTCTTCTGTTTGTGTTGCTTGCCTGCTTGTGTCTGCCGTTGTGCGT
AGATACACGCCATTCGATTGTTCTTGCACAGAATGGTAAAGAGGGCTCGA
AGATTGGTTACGGGACACACGCAGGTTGCACGAATATGCGGCGCGGGTAC
CTCCACTGTTCAGCCACACACGTCCGCCATGTCCGCAGCTTTGTGGCGTG
AATGTTCCTCCTCGAAACAGCTTGCTTCTTTGCTCACCACGTTGCAACGC
GCTGACTTTGACGTGCAGCATGTCGTGTCTTCCATCTGTGAGCACAAGAA
TATCAACCCCGACTCTCAAGTGGCTCGCAATCTATGTGCCTGCGTCACCG
ACATCAAATCCGTCAATCGACTCATTCATAGCGTGCGTTCCATGAGTGCG
CTAGCGTTTGACAGTGAGAACGACGCGCACGAACAAATGTTGGAGAGGTT
GTGGCAGCTGTTATTGCCGCACGTGCAGAGAGCTGGGGGGCGTTATTCAA
AGGATTGGGGTCGTATTGGCTTCCAACAAGCCGACCCTGCCAGCGATTTC
AGAGGCGGTGGAATTCTTGCCTTGCATCAATTGCTGTACATTTCGCAACA
GCGACAGACGGTGGCGCGACGAATGATTGTAGAACCCGCGCAGGAGCTTC
AACGATATCCGTGGGCGTGTGTTGGAATCAATCTGACCATGGAGGCGTTG
AAGATTTTGGAGGCGAGAAAGATCGATCATAGCTTGTATGGAAAATCGCT
GGAACAAGGCTTGGCTGTGTTTCATGAATTGTACTGCGACATGTTTGAAA
TCTTGCATCGCACATGGGTTACGGCTAATCCTGACAACGTTCTAGCCTTT
CCTCCTGTGATGAAACAGGTCATTTGTGACATAGATCAAGAGATATCCAC
CACGGGTTCGTTGGTACCGCCACCCTCTGAGGCATAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:97629..98665+

>Ggra9149.t1 ID=Ggra9149.t1|Name=Ggra9149.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=918bp|location=Sequence derived from alignment at tig00000075_pilon:97629..98665+ (Gracilaria gracilis GNS1m male)
ATGGTGTTTCCCTGCTTCGCGCTTAGTCGTCTGATACACGCCATTCGATT
GTTCTTGCACAGAATGGTAAAGAGGGCTCGAAGATTGGTTACGGGACACA
CGCAGGTTGCACGAATATGCGGCGCGGGTACCTCCACTGTTCAGCCACAC
ACGTCCGCCATGTCCGCAGCTTTGTGGCGTGAATGTTCCTCCTCGAAACA
GCTTGCTTCTTTGCTCACCACGTTGCAACGCGCTGACTTTGACGTGCAGC
ATGTCGTGTCTTCCATCTGTGAGCACAAGAATATCAACCCCGACTCTCAA
GTGGCTCGCAATCTATGTGCCTGCGTCACCGACATCAAATCCGTCAATCG
ACTCATTCATAGCGTGCGTTCCATGAGTGCGCTAGCGTTTGACAGTGAGA
ACGACGCGCACGAACAAATGTTGGAGAGGTTGTGGCAGCTGTTATTGCCG
CACGTGCAGAGAGCTGGGGGGCGTTATTCAAAGGATTGGGGTCGTATTGG
CTTCCAACAAGCCGACCCTGCCAGCGATTTCAGAGGCGGTGGAATTCTTG
CCTTGCATCAATTGCTGTACATTTCGCAACAGCGACAGACGGTGGCGCGA
CGAATGATTGTAGAACCCGCGCAGGAGCTTCAACGATATCCGTGGGCGTG
TGTTGGAATCAATCTGACCATGGAGGCGTTGAAGATTTTGGAGGCGAGAA
AGATCGATCATAGCTTGTATGGAAAATCGCTGGAACAAGGCTTGGCTGTG
TTTCATGAATTGTACTGCGACATGTTTGAAATCTTGCATCGCACATGGGT
TACGGCTAATCCTGACAACGTTCTAGCCTTTCCTCCTGTGATGAAACAGG
TCATTTGTGACATAGATCAAGAGATATCCACCACGGGTTCGTTGGTACCG
CCACCCTCTGAGGCATAG
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