Ggra9148.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9148.t1
Unique Name	Ggra9148.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	279

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:96402..97238 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705510.1
Preferred name	PCNA
PFAMs	PCNA_C,PCNA_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04802
KEGG Pathway	ko03030,ko03410,ko03420,ko03430,ko04110,ko04530,ko05161,ko05166,map03030,map03410,map03420,map03430,map04110,map04530,map05161,map05166
KEGG Module	M00295
GOs	GO:0000003,GO:0000070,GO:0000075,GO:0000077,GO:0000082,GO:0000083,GO:0000228,GO:0000278,GO:0000280,GO:0000700,GO:0000701,GO:0000710,GO:0000723,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003690,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006273,GO:0006275,GO:0006281,GO:0006282,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010948,GO:0015630,GO:0016043,GO:0016070,GO:0016458,GO:0016567,GO:0016604,GO:0016787,GO:0016798,GO:0016799,GO:0018130,GO:0019104,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019985,GO:0022402,GO:0022414,GO:0022616,GO:0023052,GO:0030154,GO:0030234,GO:0030330,GO:0030337,GO:0030466,GO:0030855,GO:0030894,GO:0030971,GO:0030983,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032075,GO:0032077,GO:0032135,GO:0032139,GO:0032200,GO:0032201,GO:0032268,GO:0032270,GO:0032404,GO:0032405,GO:0032446,GO:0032502,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0033683,GO:0034085,GO:0034087,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035035,GO:0035556,GO:0035753,GO:0035861,GO:0036211,GO:0040029,GO:0042176,GO:0042276,GO:0042592,GO:0042769,GO:0042770,GO:0042802,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043570,GO:0043596,GO:0043626,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044773,GO:0044774,GO:0044783,GO:0044786,GO:0044796,GO:0044819,GO:0044843,GO:0044877,GO:0045005,GO:0045732,GO:0045739,GO:0045740,GO:0045786,GO:0045787,GO:0045814,GO:0045892,GO:0045930,GO:0045934,GO:0045935,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051606,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0060429,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070182,GO:0070557,GO:0070647,GO:0070914,GO:0070987,GO:0071156,GO:0071158,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090304,GO:0090305,GO:0090329,GO:0090734,GO:0097159,GO:0098772,GO:0098813,GO:0104004,GO:0140014,GO:0140097,GO:1900262,GO:1900264,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902296,GO:1902319,GO:1902392,GO:1902394,GO:1902400,GO:1902402,GO:1902403,GO:1902679,GO:1902806,GO:1902807,GO:1902969,GO:1902983,GO:1902990,GO:1903021,GO:1903022,GO:1903046,GO:1903047,GO:1903362,GO:1903364,GO:1903459,GO:1903460,GO:1903506,GO:1903507,GO:1905777,GO:1905779,GO:1990782,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000278,GO:2000573,GO:2001020,GO:2001022,GO:2001141
Evalue	1.69e-90
EggNOG OGs	COG0592@1\|root,KOG1636@2759\|Eukaryota
Description	DNA polymerase processivity factor activity
COG category	L
BRITE	ko00000,ko00001,ko00002,ko03032,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9148	Ggra9148	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 96402..97238 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9148.t1.start1	Ggra9148.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 96402..96404 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9148.t1.CDS1	Ggra9148.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 96402..97238 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9148.t1.exon1	Ggra9148.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 96402..97238 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9148.t1.stop1	Ggra9148.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 97236..97238 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9148.t1	Ggra9148.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 96402..97238 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:96402..97238+
coding sequence from alignment at tig00000075_pilon:96402..97238+

mRNA sequence

>Ggra9148.t1 ID=Ggra9148.t1|Name=Ggra9148.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=279bp
MFEAKLTDGTTIKRVLDAIKDLIDQANFDCSADGLSLQAMDIPHVCLTTM
TLRSQAFEVYRCDRPLSMGINLSSFSKILKCAGPKDSVKIVANDEGADCA
EFIFENESADRIAHFELKLMDIDSEHLSIPEDSDYEAIISMPSQEYRRIF
SDLAIIGDTITIEITKNTACFSVEGDIGNGSLNLAQSDSADDKNAVTINV
KEPVKMTFPGKYLNTFTKAVPISEFVTLCLTDGNPLAIEFSLPDEAGFVR
YFLAPKIDQEVDADEEEEDADEDNDEEE*

spliced messenger RNA

>Ggra9148.t1 ID=Ggra9148.t1|Name=Ggra9148.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000075_pilon:96402..97238+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGAAGCGAAGCTCACCGATGGCACAACCATCAAGAGGGTTCTTGA
CGCCATCAAGGACCTCATCGACCAGGCAAACTTTGACTGCTCGGCCGATG
GACTCTCGCTTCAAGCTATGGATATACCGCATGTGTGCCTCACCACCATG
ACTCTGCGGTCGCAAGCGTTTGAGGTGTATAGGTGCGACCGGCCACTGTC
GATGGGCATCAACCTATCGTCTTTCTCAAAAATCCTGAAGTGTGCGGGGC
CCAAGGACTCCGTCAAGATCGTGGCGAACGATGAGGGTGCCGACTGTGCC
GAGTTCATCTTCGAGAATGAGTCGGCCGACCGTATCGCTCACTTCGAGCT
CAAGCTTATGGACATCGACTCGGAGCATCTGTCCATCCCTGAGGACAGCG
ACTACGAAGCTATCATCAGCATGCCGTCGCAGGAGTATCGACGAATCTTC
TCCGATCTGGCCATCATCGGTGATACCATCACCATCGAGATCACAAAAAA
TACCGCCTGCTTTTCGGTCGAGGGCGATATCGGAAATGGATCTCTCAACC
TGGCTCAAAGTGACTCGGCCGATGACAAGAACGCGGTCACTATCAACGTT
AAGGAACCGGTGAAGATGACGTTCCCGGGCAAGTACCTTAACACTTTCAC
GAAGGCGGTGCCAATATCGGAGTTCGTGACACTGTGTCTCACGGATGGCA
ACCCGCTGGCCATCGAGTTCTCGCTGCCGGACGAGGCCGGCTTTGTACGA
TACTTCCTCGCGCCCAAGATcgaccaggaggtggacgccgacgaggagga
ggaggacgccgatgaggacaacgacgaagaggaATAG

protein sequence of Ggra9148.t1

>Ggra9148.t1 ID=Ggra9148.t1|Name=Ggra9148.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=279bp
MFEAKLTDGTTIKRVLDAIKDLIDQANFDCSADGLSLQAMDIPHVCLTTM
TLRSQAFEVYRCDRPLSMGINLSSFSKILKCAGPKDSVKIVANDEGADCA
EFIFENESADRIAHFELKLMDIDSEHLSIPEDSDYEAIISMPSQEYRRIF
SDLAIIGDTITIEITKNTACFSVEGDIGNGSLNLAQSDSADDKNAVTINV
KEPVKMTFPGKYLNTFTKAVPISEFVTLCLTDGNPLAIEFSLPDEAGFVR
YFLAPKIDQEVDADEEEEDADEDNDEEE*

mRNA from alignment at tig00000075_pilon:96402..97238+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9148.t1 ID=Ggra9148.t1|Name=Ggra9148.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000075_pilon:96402..97238+ (Gracilaria gracilis GNS1m male)
ATGTTCGAAGCGAAGCTCACCGATGGCACAACCATCAAGAGGGTTCTTGA
CGCCATCAAGGACCTCATCGACCAGGCAAACTTTGACTGCTCGGCCGATG
GACTCTCGCTTCAAGCTATGGATATACCGCATGTGTGCCTCACCACCATG
ACTCTGCGGTCGCAAGCGTTTGAGGTGTATAGGTGCGACCGGCCACTGTC
GATGGGCATCAACCTATCGTCTTTCTCAAAAATCCTGAAGTGTGCGGGGC
CCAAGGACTCCGTCAAGATCGTGGCGAACGATGAGGGTGCCGACTGTGCC
GAGTTCATCTTCGAGAATGAGTCGGCCGACCGTATCGCTCACTTCGAGCT
CAAGCTTATGGACATCGACTCGGAGCATCTGTCCATCCCTGAGGACAGCG
ACTACGAAGCTATCATCAGCATGCCGTCGCAGGAGTATCGACGAATCTTC
TCCGATCTGGCCATCATCGGTGATACCATCACCATCGAGATCACAAAAAA
TACCGCCTGCTTTTCGGTCGAGGGCGATATCGGAAATGGATCTCTCAACC
TGGCTCAAAGTGACTCGGCCGATGACAAGAACGCGGTCACTATCAACGTT
AAGGAACCGGTGAAGATGACGTTCCCGGGCAAGTACCTTAACACTTTCAC
GAAGGCGGTGCCAATATCGGAGTTCGTGACACTGTGTCTCACGGATGGCA
ACCCGCTGGCCATCGAGTTCTCGCTGCCGGACGAGGCCGGCTTTGTACGA
TACTTCCTCGCGCCCAAGATcgaccaggaggtggacgccgacgaggagga
ggaggacgccgatgaggacaacgacgaagaggaATAG

Coding sequence (CDS) from alignment at tig00000075_pilon:96402..97238+

>Ggra9148.t1 ID=Ggra9148.t1|Name=Ggra9148.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00000075_pilon:96402..97238+ (Gracilaria gracilis GNS1m male)
ATGTTCGAAGCGAAGCTCACCGATGGCACAACCATCAAGAGGGTTCTTGA
CGCCATCAAGGACCTCATCGACCAGGCAAACTTTGACTGCTCGGCCGATG
GACTCTCGCTTCAAGCTATGGATATACCGCATGTGTGCCTCACCACCATG
ACTCTGCGGTCGCAAGCGTTTGAGGTGTATAGGTGCGACCGGCCACTGTC
GATGGGCATCAACCTATCGTCTTTCTCAAAAATCCTGAAGTGTGCGGGGC
CCAAGGACTCCGTCAAGATCGTGGCGAACGATGAGGGTGCCGACTGTGCC
GAGTTCATCTTCGAGAATGAGTCGGCCGACCGTATCGCTCACTTCGAGCT
CAAGCTTATGGACATCGACTCGGAGCATCTGTCCATCCCTGAGGACAGCG
ACTACGAAGCTATCATCAGCATGCCGTCGCAGGAGTATCGACGAATCTTC
TCCGATCTGGCCATCATCGGTGATACCATCACCATCGAGATCACAAAAAA
TACCGCCTGCTTTTCGGTCGAGGGCGATATCGGAAATGGATCTCTCAACC
TGGCTCAAAGTGACTCGGCCGATGACAAGAACGCGGTCACTATCAACGTT
AAGGAACCGGTGAAGATGACGTTCCCGGGCAAGTACCTTAACACTTTCAC
GAAGGCGGTGCCAATATCGGAGTTCGTGACACTGTGTCTCACGGATGGCA
ACCCGCTGGCCATCGAGTTCTCGCTGCCGGACGAGGCCGGCTTTGTACGA
TACTTCCTCGCGCCCAAGATcgaccaggaggtggacgccgacgaggagga
ggaggacgccgatgaggacaacgacgaagaggaATAG