Ggra9148.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9148.t1
Unique NameGgra9148.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length279
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:96402..97238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705510.1
Preferred namePCNA
PFAMsPCNA_C,PCNA_N
Max annot lvl2759|Eukaryota
KEGG koko:K04802
KEGG Pathwayko03030,ko03410,ko03420,ko03430,ko04110,ko04530,ko05161,ko05166,map03030,map03410,map03420,map03430,map04110,map04530,map05161,map05166
KEGG ModuleM00295
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000077,GO:0000082,GO:0000083,GO:0000228,GO:0000278,GO:0000280,GO:0000700,GO:0000701,GO:0000710,GO:0000723,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003690,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006273,GO:0006275,GO:0006281,GO:0006282,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010948,GO:0015630,GO:0016043,GO:0016070,GO:0016458,GO:0016567,GO:0016604,GO:0016787,GO:0016798,GO:0016799,GO:0018130,GO:0019104,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019985,GO:0022402,GO:0022414,GO:0022616,GO:0023052,GO:0030154,GO:0030234,GO:0030330,GO:0030337,GO:0030466,GO:0030855,GO:0030894,GO:0030971,GO:0030983,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032075,GO:0032077,GO:0032135,GO:0032139,GO:0032200,GO:0032201,GO:0032268,GO:0032270,GO:0032404,GO:0032405,GO:0032446,GO:0032502,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0033683,GO:0034085,GO:0034087,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035035,GO:0035556,GO:0035753,GO:0035861,GO:0036211,GO:0040029,GO:0042176,GO:0042276,GO:0042592,GO:0042769,GO:0042770,GO:0042802,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043570,GO:0043596,GO:0043626,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044773,GO:0044774,GO:0044783,GO:0044786,GO:0044796,GO:0044819,GO:0044843,GO:0044877,GO:0045005,GO:0045732,GO:0045739,GO:0045740,GO:0045786,GO:0045787,GO:0045814,GO:0045892,GO:0045930,GO:0045934,GO:0045935,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051606,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0060429,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070182,GO:0070557,GO:0070647,GO:0070914,GO:0070987,GO:0071156,GO:0071158,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090304,GO:0090305,GO:0090329,GO:0090734,GO:0097159,GO:0098772,GO:0098813,GO:0104004,GO:0140014,GO:0140097,GO:1900262,GO:1900264,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902296,GO:1902319,GO:1902392,GO:1902394,GO:1902400,GO:1902402,GO:1902403,GO:1902679,GO:1902806,GO:1902807,GO:1902969,GO:1902983,GO:1902990,GO:1903021,GO:1903022,GO:1903046,GO:1903047,GO:1903362,GO:1903364,GO:1903459,GO:1903460,GO:1903506,GO:1903507,GO:1905777,GO:1905779,GO:1990782,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000278,GO:2000573,GO:2001020,GO:2001022,GO:2001141
Evalue1.69e-90
EggNOG OGsCOG0592@1|root,KOG1636@2759|Eukaryota
DescriptionDNA polymerase processivity factor activity
COG categoryL
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9148Ggra9148Gracilaria gracilis GNS1m malegenetig00000075_pilon 96402..97238 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9148.t1.start1Ggra9148.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 96402..96404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9148.t1.CDS1Ggra9148.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 96402..97238 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9148.t1.exon1Ggra9148.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 96402..97238 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9148.t1.stop1Ggra9148.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 97236..97238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9148.t1Ggra9148.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 96402..97238 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9148.t1 ID=Ggra9148.t1|Name=Ggra9148.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=279bp
MFEAKLTDGTTIKRVLDAIKDLIDQANFDCSADGLSLQAMDIPHVCLTTM
TLRSQAFEVYRCDRPLSMGINLSSFSKILKCAGPKDSVKIVANDEGADCA
EFIFENESADRIAHFELKLMDIDSEHLSIPEDSDYEAIISMPSQEYRRIF
SDLAIIGDTITIEITKNTACFSVEGDIGNGSLNLAQSDSADDKNAVTINV
KEPVKMTFPGKYLNTFTKAVPISEFVTLCLTDGNPLAIEFSLPDEAGFVR
YFLAPKIDQEVDADEEEEDADEDNDEEE*
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spliced messenger RNA

>Ggra9148.t1 ID=Ggra9148.t1|Name=Ggra9148.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000075_pilon:96402..97238+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGAAGCGAAGCTCACCGATGGCACAACCATCAAGAGGGTTCTTGA
CGCCATCAAGGACCTCATCGACCAGGCAAACTTTGACTGCTCGGCCGATG
GACTCTCGCTTCAAGCTATGGATATACCGCATGTGTGCCTCACCACCATG
ACTCTGCGGTCGCAAGCGTTTGAGGTGTATAGGTGCGACCGGCCACTGTC
GATGGGCATCAACCTATCGTCTTTCTCAAAAATCCTGAAGTGTGCGGGGC
CCAAGGACTCCGTCAAGATCGTGGCGAACGATGAGGGTGCCGACTGTGCC
GAGTTCATCTTCGAGAATGAGTCGGCCGACCGTATCGCTCACTTCGAGCT
CAAGCTTATGGACATCGACTCGGAGCATCTGTCCATCCCTGAGGACAGCG
ACTACGAAGCTATCATCAGCATGCCGTCGCAGGAGTATCGACGAATCTTC
TCCGATCTGGCCATCATCGGTGATACCATCACCATCGAGATCACAAAAAA
TACCGCCTGCTTTTCGGTCGAGGGCGATATCGGAAATGGATCTCTCAACC
TGGCTCAAAGTGACTCGGCCGATGACAAGAACGCGGTCACTATCAACGTT
AAGGAACCGGTGAAGATGACGTTCCCGGGCAAGTACCTTAACACTTTCAC
GAAGGCGGTGCCAATATCGGAGTTCGTGACACTGTGTCTCACGGATGGCA
ACCCGCTGGCCATCGAGTTCTCGCTGCCGGACGAGGCCGGCTTTGTACGA
TACTTCCTCGCGCCCAAGATcgaccaggaggtggacgccgacgaggagga
ggaggacgccgatgaggacaacgacgaagaggaATAG
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protein sequence of Ggra9148.t1

>Ggra9148.t1 ID=Ggra9148.t1|Name=Ggra9148.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=279bp
MFEAKLTDGTTIKRVLDAIKDLIDQANFDCSADGLSLQAMDIPHVCLTTM
TLRSQAFEVYRCDRPLSMGINLSSFSKILKCAGPKDSVKIVANDEGADCA
EFIFENESADRIAHFELKLMDIDSEHLSIPEDSDYEAIISMPSQEYRRIF
SDLAIIGDTITIEITKNTACFSVEGDIGNGSLNLAQSDSADDKNAVTINV
KEPVKMTFPGKYLNTFTKAVPISEFVTLCLTDGNPLAIEFSLPDEAGFVR
YFLAPKIDQEVDADEEEEDADEDNDEEE*
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mRNA from alignment at tig00000075_pilon:96402..97238+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9148.t1 ID=Ggra9148.t1|Name=Ggra9148.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000075_pilon:96402..97238+ (Gracilaria gracilis GNS1m male)
ATGTTCGAAGCGAAGCTCACCGATGGCACAACCATCAAGAGGGTTCTTGA
CGCCATCAAGGACCTCATCGACCAGGCAAACTTTGACTGCTCGGCCGATG
GACTCTCGCTTCAAGCTATGGATATACCGCATGTGTGCCTCACCACCATG
ACTCTGCGGTCGCAAGCGTTTGAGGTGTATAGGTGCGACCGGCCACTGTC
GATGGGCATCAACCTATCGTCTTTCTCAAAAATCCTGAAGTGTGCGGGGC
CCAAGGACTCCGTCAAGATCGTGGCGAACGATGAGGGTGCCGACTGTGCC
GAGTTCATCTTCGAGAATGAGTCGGCCGACCGTATCGCTCACTTCGAGCT
CAAGCTTATGGACATCGACTCGGAGCATCTGTCCATCCCTGAGGACAGCG
ACTACGAAGCTATCATCAGCATGCCGTCGCAGGAGTATCGACGAATCTTC
TCCGATCTGGCCATCATCGGTGATACCATCACCATCGAGATCACAAAAAA
TACCGCCTGCTTTTCGGTCGAGGGCGATATCGGAAATGGATCTCTCAACC
TGGCTCAAAGTGACTCGGCCGATGACAAGAACGCGGTCACTATCAACGTT
AAGGAACCGGTGAAGATGACGTTCCCGGGCAAGTACCTTAACACTTTCAC
GAAGGCGGTGCCAATATCGGAGTTCGTGACACTGTGTCTCACGGATGGCA
ACCCGCTGGCCATCGAGTTCTCGCTGCCGGACGAGGCCGGCTTTGTACGA
TACTTCCTCGCGCCCAAGATcgaccaggaggtggacgccgacgaggagga
ggaggacgccgatgaggacaacgacgaagaggaATAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:96402..97238+

>Ggra9148.t1 ID=Ggra9148.t1|Name=Ggra9148.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00000075_pilon:96402..97238+ (Gracilaria gracilis GNS1m male)
ATGTTCGAAGCGAAGCTCACCGATGGCACAACCATCAAGAGGGTTCTTGA
CGCCATCAAGGACCTCATCGACCAGGCAAACTTTGACTGCTCGGCCGATG
GACTCTCGCTTCAAGCTATGGATATACCGCATGTGTGCCTCACCACCATG
ACTCTGCGGTCGCAAGCGTTTGAGGTGTATAGGTGCGACCGGCCACTGTC
GATGGGCATCAACCTATCGTCTTTCTCAAAAATCCTGAAGTGTGCGGGGC
CCAAGGACTCCGTCAAGATCGTGGCGAACGATGAGGGTGCCGACTGTGCC
GAGTTCATCTTCGAGAATGAGTCGGCCGACCGTATCGCTCACTTCGAGCT
CAAGCTTATGGACATCGACTCGGAGCATCTGTCCATCCCTGAGGACAGCG
ACTACGAAGCTATCATCAGCATGCCGTCGCAGGAGTATCGACGAATCTTC
TCCGATCTGGCCATCATCGGTGATACCATCACCATCGAGATCACAAAAAA
TACCGCCTGCTTTTCGGTCGAGGGCGATATCGGAAATGGATCTCTCAACC
TGGCTCAAAGTGACTCGGCCGATGACAAGAACGCGGTCACTATCAACGTT
AAGGAACCGGTGAAGATGACGTTCCCGGGCAAGTACCTTAACACTTTCAC
GAAGGCGGTGCCAATATCGGAGTTCGTGACACTGTGTCTCACGGATGGCA
ACCCGCTGGCCATCGAGTTCTCGCTGCCGGACGAGGCCGGCTTTGTACGA
TACTTCCTCGCGCCCAAGATcgaccaggaggtggacgccgacgaggagga
ggaggacgccgatgaggacaacgacgaagaggaATAG
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