Ggra9141.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9141.t1
Unique NameGgra9141.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length389
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:85858..87106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707403.1
Preferred nameFK
PFAMsERG4_ERG24
Max annot lvl2759|Eukaryota
KEGG rclassRC01441
KEGG koko:K00222,ko:K19532
KEGG ReactionR05639,R07483
KEGG Pathwayko00100,ko01100,ko01110,ko01130,map00100,map01100,map01110,map01130
KEGG ModuleM00101
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0008150,GO:0008152,GO:0012505,GO:0016020,GO:0016021,GO:0016491,GO:0016627,GO:0016628,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0036094,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048037,GO:0050613,GO:0050661,GO:0050662,GO:0055114,GO:0097159,GO:0098827,GO:1901265,GO:1901363
Evalue1.71e-140
EggNOG OGsKOG1435@1|root,KOG1435@2759|Eukaryota
EC1.3.1.70
Descriptionsterol delta7 reductase activity
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9141Ggra9141Gracilaria gracilis GNS1m malegenetig00000075_pilon 85858..87106 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9141.t1Ggra9141.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 85858..87106 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9141.t1.stop1Ggra9141.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 85858..85860 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9141.t1.CDS1Ggra9141.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 85858..86290 -
Ggra9141.t1.CDS2Ggra9141.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 86373..87106 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9141.t1.exon1Ggra9141.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 85858..86290 -
Ggra9141.t1.exon2Ggra9141.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 86373..87106 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9141.t1.intron1Ggra9141.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 86291..86372 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9141.t1.start1Ggra9141.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 87104..87106 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9141.t1 ID=Ggra9141.t1|Name=Ggra9141.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=389bp
MRWTHGYLLLCAFAALILARDFIPLVPSLNLSLPPARIYVALLSYVASLA
VLGAFLPGKIQLGAPLSDGSRLQYKCNGLLLTGFVVTMLAISVWHGYVPS
TWVADHYAELFVATNVFAFVLSAYLFVKGRLSRPPNWLKPRSVLADFVMG
SELNPFLFGVNLKFFSYRPSMCGWLIVNLSFVAKQYETLGFISGRMMLYQ
ITTAWYIWDYFVHETKIVSTWDIIAEHFGLMLVWGDYVFIVFAFSVQNFF
LLNDTTPLSYWNAIVILIAFTTGFAIFRGANSQKHQFKTNPNAFIWGKPA
ITVGGKLLASGFWGIARHLNYTGDLLLAMSFCLPCGCCSSLPYFYFIYLL
LLTVHREKRDDERCSHKYKSLWDDYCRLVPYRMVPFVY*
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spliced messenger RNA

>Ggra9141.t1 ID=Ggra9141.t1|Name=Ggra9141.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000075_pilon:85858..87106- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTGGACGCACGGCTATCTGCTTCTATGCGCGTTCGCCGCGCTCAT
TCTCGCGCGCGATTTCATCCCGCTCGTCCCTTCGTTGAATCTGTCGCTGC
CCCCGGCGCGCATCTACGTCGCCTTGCTGTCGTACGTCGCCTCGCTCGCC
GTGCTGGGCGCCTTTCTTCCGGGCAAGATCCAGCTGGGCGCTCCGCTTTC
GGACGGCTCGCGTCTGCAGTACAAGTGCAATGGCTTGTTGCTCACTGGCT
TTGTCGTGACCATGCTGGCCATCTCCGTGTGGCACGGCTATGTGCCGTCT
ACCTGGGTGGCTGATCACTATGCCGAGCTGTTTGTTGCTACCAATGTCTT
TGCCTTTGTTCTCAGTGCGTATCTGTTCGTCAAGGGCAGGCTGTCGAGGC
CGCCAAACTGGCTCAAGCCGCGCTCCGTGCTGGCCGATTTCGTCATGGGG
TCCGAGTTGAACCCTTTCTTGTTTGGCGTCAATCTCAAGTTCTTTTCGTA
TAGGCCTTCCATGTGCGGCTGGTTGATTGTCAACCTTTCGTTTGTCGCCA
AGCAATACGAGACGTTGGGCTTTATTAGCGGCAGAATGATGCTGTATCAG
ATCACCACTGCTTGGTATATATGGGATTATTTCGTGCATGAGACCAAGAT
CGTCTCGACTTGGGATATTATTGCGGAGCATTTTGGACTCATGCTAGTTT
GGGGAGATTATGTGTTCATTGTGTTCGCTTTCAGTGTACAAAACTTCTTC
TTGTTAAACGACACAACGCCTCTGTCATACTGGAATGCCATTGTGATCCT
CATCGCCTTCACCACGGGGTTTGCCATCTTCCGCGGAGCCAACTCTCAAA
AGCACCAGTTCAAGACGAACCCCAACGCCTTTATCTGGGGCAAGCCTGCT
ATAACCGTCGGTGGCAAGCTGCTGGCGTCTGGGTTTTGGGGAATCGCTCG
ACATCTCAACTACACTGGTGATTTACTGCTGGCCATGTCGTTCTGTCTTC
CGTGCGGATGCTGCTCTTCTCTGCCGTACTTTTACTTTATTTACCTGCTC
CTGCTCACCGTTCATCGCGAAAAACGCGACGATGAGCGATGCTCACACAA
GTACAAGTCTTTGTGGGACGACTATTGTAGACTTGTTCCTTACCGTATGG
TTCCGTTCGTGTACTAA
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protein sequence of Ggra9141.t1

>Ggra9141.t1 ID=Ggra9141.t1|Name=Ggra9141.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=389bp
MRWTHGYLLLCAFAALILARDFIPLVPSLNLSLPPARIYVALLSYVASLA
VLGAFLPGKIQLGAPLSDGSRLQYKCNGLLLTGFVVTMLAISVWHGYVPS
TWVADHYAELFVATNVFAFVLSAYLFVKGRLSRPPNWLKPRSVLADFVMG
SELNPFLFGVNLKFFSYRPSMCGWLIVNLSFVAKQYETLGFISGRMMLYQ
ITTAWYIWDYFVHETKIVSTWDIIAEHFGLMLVWGDYVFIVFAFSVQNFF
LLNDTTPLSYWNAIVILIAFTTGFAIFRGANSQKHQFKTNPNAFIWGKPA
ITVGGKLLASGFWGIARHLNYTGDLLLAMSFCLPCGCCSSLPYFYFIYLL
LLTVHREKRDDERCSHKYKSLWDDYCRLVPYRMVPFVY*
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mRNA from alignment at tig00000075_pilon:85858..87106-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9141.t1 ID=Ggra9141.t1|Name=Ggra9141.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1249bp|location=Sequence derived from alignment at tig00000075_pilon:85858..87106- (Gracilaria gracilis GNS1m male)
ATGCGTTGGACGCACGGCTATCTGCTTCTATGCGCGTTCGCCGCGCTCAT
TCTCGCGCGCGATTTCATCCCGCTCGTCCCTTCGTTGAATCTGTCGCTGC
CCCCGGCGCGCATCTACGTCGCCTTGCTGTCGTACGTCGCCTCGCTCGCC
GTGCTGGGCGCCTTTCTTCCGGGCAAGATCCAGCTGGGCGCTCCGCTTTC
GGACGGCTCGCGTCTGCAGTACAAGTGCAATGGCTTGTTGCTCACTGGCT
TTGTCGTGACCATGCTGGCCATCTCCGTGTGGCACGGCTATGTGCCGTCT
ACCTGGGTGGCTGATCACTATGCCGAGCTGTTTGTTGCTACCAATGTCTT
TGCCTTTGTTCTCAGTGCGTATCTGTTCGTCAAGGGCAGGCTGTCGAGGC
CGCCAAACTGGCTCAAGCCGCGCTCCGTGCTGGCCGATTTCGTCATGGGG
TCCGAGTTGAACCCTTTCTTGTTTGGCGTCAATCTCAAGTTCTTTTCGTA
TAGGCCTTCCATGTGCGGCTGGTTGATTGTCAACCTTTCGTTTGTCGCCA
AGCAATACGAGACGTTGGGCTTTATTAGCGGCAGAATGATGCTGTATCAG
ATCACCACTGCTTGGTATATATGGGATTATTTCGTGCATGAGACCAAGAT
CGTCTCGACTTGGGATATTATTGCGGAGCATTTTGGACTCATGCTAGTTT
GGGGAGATTATGTGTTCATTGTGTTCGCTTTCAGGTATGTTCGCTCCGCC
TTTCTTCGAAAACACACGTGCTGCAACAGAAAACGAAACAGCCTTCTAAC
AACAGCCACGCTGCAGTGTACAAAACTTCTTCTTGTTAAACGACACAACG
CCTCTGTCATACTGGAATGCCATTGTGATCCTCATCGCCTTCACCACGGG
GTTTGCCATCTTCCGCGGAGCCAACTCTCAAAAGCACCAGTTCAAGACGA
ACCCCAACGCCTTTATCTGGGGCAAGCCTGCTATAACCGTCGGTGGCAAG
CTGCTGGCGTCTGGGTTTTGGGGAATCGCTCGACATCTCAACTACACTGG
TGATTTACTGCTGGCCATGTCGTTCTGTCTTCCGTGCGGATGCTGCTCTT
CTCTGCCGTACTTTTACTTTATTTACCTGCTCCTGCTCACCGTTCATCGC
GAAAAACGCGACGATGAGCGATGCTCACACAAGTACAAGTCTTTGTGGGA
CGACTATTGTAGACTTGTTCCTTACCGTATGGTTCCGTTCGTGTACTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:85858..87106-

>Ggra9141.t1 ID=Ggra9141.t1|Name=Ggra9141.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1167bp|location=Sequence derived from alignment at tig00000075_pilon:85858..87106- (Gracilaria gracilis GNS1m male)
ATGCGTTGGACGCACGGCTATCTGCTTCTATGCGCGTTCGCCGCGCTCAT
TCTCGCGCGCGATTTCATCCCGCTCGTCCCTTCGTTGAATCTGTCGCTGC
CCCCGGCGCGCATCTACGTCGCCTTGCTGTCGTACGTCGCCTCGCTCGCC
GTGCTGGGCGCCTTTCTTCCGGGCAAGATCCAGCTGGGCGCTCCGCTTTC
GGACGGCTCGCGTCTGCAGTACAAGTGCAATGGCTTGTTGCTCACTGGCT
TTGTCGTGACCATGCTGGCCATCTCCGTGTGGCACGGCTATGTGCCGTCT
ACCTGGGTGGCTGATCACTATGCCGAGCTGTTTGTTGCTACCAATGTCTT
TGCCTTTGTTCTCAGTGCGTATCTGTTCGTCAAGGGCAGGCTGTCGAGGC
CGCCAAACTGGCTCAAGCCGCGCTCCGTGCTGGCCGATTTCGTCATGGGG
TCCGAGTTGAACCCTTTCTTGTTTGGCGTCAATCTCAAGTTCTTTTCGTA
TAGGCCTTCCATGTGCGGCTGGTTGATTGTCAACCTTTCGTTTGTCGCCA
AGCAATACGAGACGTTGGGCTTTATTAGCGGCAGAATGATGCTGTATCAG
ATCACCACTGCTTGGTATATATGGGATTATTTCGTGCATGAGACCAAGAT
CGTCTCGACTTGGGATATTATTGCGGAGCATTTTGGACTCATGCTAGTTT
GGGGAGATTATGTGTTCATTGTGTTCGCTTTCAGTGTACAAAACTTCTTC
TTGTTAAACGACACAACGCCTCTGTCATACTGGAATGCCATTGTGATCCT
CATCGCCTTCACCACGGGGTTTGCCATCTTCCGCGGAGCCAACTCTCAAA
AGCACCAGTTCAAGACGAACCCCAACGCCTTTATCTGGGGCAAGCCTGCT
ATAACCGTCGGTGGCAAGCTGCTGGCGTCTGGGTTTTGGGGAATCGCTCG
ACATCTCAACTACACTGGTGATTTACTGCTGGCCATGTCGTTCTGTCTTC
CGTGCGGATGCTGCTCTTCTCTGCCGTACTTTTACTTTATTTACCTGCTC
CTGCTCACCGTTCATCGCGAAAAACGCGACGATGAGCGATGCTCACACAA
GTACAAGTCTTTGTGGGACGACTATTGTAGACTTGTTCCTTACCGTATGG
TTCCGTTCGTGTACTAA
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