Ggra9139.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9139.t1
Unique NameGgra9139.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length369
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:83117..84223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog56107.Cylst_4896
Preferred nameribD
PFAMsRibD_C,dCMP_cyt_deam_1
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00204,RC00933
KEGG koko:K11752
KEGG ReactionR03458,R03459
KEGG Pathwayko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024
KEGG ModuleM00125
GOsGO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0034641,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360
Evalue2.53e-122
EggNOG OGsCOG0117@1|root,COG1985@1|root,COG0117@2|Bacteria,COG1985@2|Bacteria,1G0NF@1117|Cyanobacteria,1HJS2@1161|Nostocales
EC1.1.1.193,3.5.4.26
DescriptionConverts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9139Ggra9139Gracilaria gracilis GNS1m malegenetig00000075_pilon 83117..84223 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9139.t1.stop1Ggra9139.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 83117..83119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9139.t1.CDS1Ggra9139.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 83117..84223 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9139.t1.exon1Ggra9139.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 83117..84223 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9139.t1.start1Ggra9139.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 84221..84223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9139.t1Ggra9139.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 83117..84223 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9139.t1 ID=Ggra9139.t1|Name=Ggra9139.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=369bp
MRRAVHLARRAEGQTRPNPPVGCVITSASGELLGEGYHQRAGFAHAEVNA
LHDATQRGNDVTGATAYVSLEPCNHYGRTPPCSKALVDARIARVVVGIID
PDPRTAGNGLQTLQQAGIRVSVGVEAQLCQRLNEGFVHRVLTKRPFGILK
YAMTLDGKIAASDGSSKWVTGEAARLRVQQIRRSVDAIIVGGQTVRNDDP
RLTVRDGKSLDAYGLEQLSPLRVVMTRDLQLPPDARLWNHQQTAPTVVLA
DASHGRPAFATELIARGVKLEQVPGLTADDAMAYLYEQSCLNVLWECGGN
LASQAVRDGAVQKVYAFIAPKIVGGTNSPTPLANPPVAPIMNQAVSLEHT
AFNVYENGDVLVTGYINK*
back to top

spliced messenger RNA

>Ggra9139.t1 ID=Ggra9139.t1|Name=Ggra9139.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00000075_pilon:83117..84223- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCGCGCAGTACACCTCGCACGCCGCGCAGAGGGCCAGACTCGCCC
CAACCCGCCCGTGGGCTGCGTCATCACGTCCGCCAGCGGCGAGCTATTAG
GAGAAGGCTATCATCAACGCGCAGGCTTCGCACACGCAGAGGTGAACGCT
TTACACGACGCCACACAACGAGGTAACGATGTCACCGGAGCTACCGCCTA
TGTATCTTTAGAGCCGTGCAATCATTACGGCCGCACGCCTCCATGTTCCA
AAGCGCTCGTGGACGCACGCATTGCGCGCGTCGTCGTGGGTATCATAGAT
CCGGACCCGCGTACGGCCGGTAACGGCCTTCAAACGCTGCAGCAGGCAGG
AATTCGCGTTTCCGTCGGCGTGGAGGCCCAATTGTGTCAGCGTCTCAACG
AGGGCTTCGTTCACAGGGTACTCACCAAGCGCCCATTCGGCATTCTCAAG
TACGCCATGACGCTGGACGGCAAAATCGCCGCGTCTGACGGCAGCTCCAA
GTGGGTCACGGGTGAAGCCGCTCGTCTGCGAGTGCAACAAATTCGACGCT
CCGTCGACGCCATTATTGTTGGCGGACAAACCGTGCGCAACGATGATCCT
AGACTCACCGTTCGGGACGGCAAATCTTTAGACGCTTACGGCCTTGAGCA
ACTCTCTCCTCTCCGCGTCGTCATGACCAGGGATTTGCAACTCCCGCCCG
ACGCTAGGCTGTGGAACCACCAGCAGACTGCTCCAACCGTTGTGCTTGCT
GACGCCTCGCACGGCAGGCCTGCCTTCGCAACCGAGCTTATTGCACGTGG
CGTTAAACTCGAGCAAGTACCAGGTCTCACTGCGGACGATGCCATGGCTT
ACTTGTATGAACAGTCGTGTCTTAACGTGCTTTGGGAGTGCGGTGGAAAT
CTGGCCAGTCAAGCCGTTCGTGACGGTGCCGTGCAGAAAGTGTATGCATT
CATAGCGCCCAAAATAGTTGGCGGAACTAATTCGCCCACACCATTAGCTA
ATCCGCCAGTTGCGCCCATTATGAATCAAGCTGTTTCCCTTGAGCATACT
GCGTTCAATGTGTACGAAAACGGCGATGTGCTCGTTACCGGGTACATAAA
CAAATAG
back to top

protein sequence of Ggra9139.t1

>Ggra9139.t1 ID=Ggra9139.t1|Name=Ggra9139.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=369bp
MRRAVHLARRAEGQTRPNPPVGCVITSASGELLGEGYHQRAGFAHAEVNA
LHDATQRGNDVTGATAYVSLEPCNHYGRTPPCSKALVDARIARVVVGIID
PDPRTAGNGLQTLQQAGIRVSVGVEAQLCQRLNEGFVHRVLTKRPFGILK
YAMTLDGKIAASDGSSKWVTGEAARLRVQQIRRSVDAIIVGGQTVRNDDP
RLTVRDGKSLDAYGLEQLSPLRVVMTRDLQLPPDARLWNHQQTAPTVVLA
DASHGRPAFATELIARGVKLEQVPGLTADDAMAYLYEQSCLNVLWECGGN
LASQAVRDGAVQKVYAFIAPKIVGGTNSPTPLANPPVAPIMNQAVSLEHT
AFNVYENGDVLVTGYINK*
back to top

mRNA from alignment at tig00000075_pilon:83117..84223-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9139.t1 ID=Ggra9139.t1|Name=Ggra9139.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00000075_pilon:83117..84223- (Gracilaria gracilis GNS1m male)
ATGCGGCGCGCAGTACACCTCGCACGCCGCGCAGAGGGCCAGACTCGCCC
CAACCCGCCCGTGGGCTGCGTCATCACGTCCGCCAGCGGCGAGCTATTAG
GAGAAGGCTATCATCAACGCGCAGGCTTCGCACACGCAGAGGTGAACGCT
TTACACGACGCCACACAACGAGGTAACGATGTCACCGGAGCTACCGCCTA
TGTATCTTTAGAGCCGTGCAATCATTACGGCCGCACGCCTCCATGTTCCA
AAGCGCTCGTGGACGCACGCATTGCGCGCGTCGTCGTGGGTATCATAGAT
CCGGACCCGCGTACGGCCGGTAACGGCCTTCAAACGCTGCAGCAGGCAGG
AATTCGCGTTTCCGTCGGCGTGGAGGCCCAATTGTGTCAGCGTCTCAACG
AGGGCTTCGTTCACAGGGTACTCACCAAGCGCCCATTCGGCATTCTCAAG
TACGCCATGACGCTGGACGGCAAAATCGCCGCGTCTGACGGCAGCTCCAA
GTGGGTCACGGGTGAAGCCGCTCGTCTGCGAGTGCAACAAATTCGACGCT
CCGTCGACGCCATTATTGTTGGCGGACAAACCGTGCGCAACGATGATCCT
AGACTCACCGTTCGGGACGGCAAATCTTTAGACGCTTACGGCCTTGAGCA
ACTCTCTCCTCTCCGCGTCGTCATGACCAGGGATTTGCAACTCCCGCCCG
ACGCTAGGCTGTGGAACCACCAGCAGACTGCTCCAACCGTTGTGCTTGCT
GACGCCTCGCACGGCAGGCCTGCCTTCGCAACCGAGCTTATTGCACGTGG
CGTTAAACTCGAGCAAGTACCAGGTCTCACTGCGGACGATGCCATGGCTT
ACTTGTATGAACAGTCGTGTCTTAACGTGCTTTGGGAGTGCGGTGGAAAT
CTGGCCAGTCAAGCCGTTCGTGACGGTGCCGTGCAGAAAGTGTATGCATT
CATAGCGCCCAAAATAGTTGGCGGAACTAATTCGCCCACACCATTAGCTA
ATCCGCCAGTTGCGCCCATTATGAATCAAGCTGTTTCCCTTGAGCATACT
GCGTTCAATGTGTACGAAAACGGCGATGTGCTCGTTACCGGGTACATAAA
CAAATAG
back to top

Coding sequence (CDS) from alignment at tig00000075_pilon:83117..84223-

>Ggra9139.t1 ID=Ggra9139.t1|Name=Ggra9139.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1107bp|location=Sequence derived from alignment at tig00000075_pilon:83117..84223- (Gracilaria gracilis GNS1m male)
ATGCGGCGCGCAGTACACCTCGCACGCCGCGCAGAGGGCCAGACTCGCCC
CAACCCGCCCGTGGGCTGCGTCATCACGTCCGCCAGCGGCGAGCTATTAG
GAGAAGGCTATCATCAACGCGCAGGCTTCGCACACGCAGAGGTGAACGCT
TTACACGACGCCACACAACGAGGTAACGATGTCACCGGAGCTACCGCCTA
TGTATCTTTAGAGCCGTGCAATCATTACGGCCGCACGCCTCCATGTTCCA
AAGCGCTCGTGGACGCACGCATTGCGCGCGTCGTCGTGGGTATCATAGAT
CCGGACCCGCGTACGGCCGGTAACGGCCTTCAAACGCTGCAGCAGGCAGG
AATTCGCGTTTCCGTCGGCGTGGAGGCCCAATTGTGTCAGCGTCTCAACG
AGGGCTTCGTTCACAGGGTACTCACCAAGCGCCCATTCGGCATTCTCAAG
TACGCCATGACGCTGGACGGCAAAATCGCCGCGTCTGACGGCAGCTCCAA
GTGGGTCACGGGTGAAGCCGCTCGTCTGCGAGTGCAACAAATTCGACGCT
CCGTCGACGCCATTATTGTTGGCGGACAAACCGTGCGCAACGATGATCCT
AGACTCACCGTTCGGGACGGCAAATCTTTAGACGCTTACGGCCTTGAGCA
ACTCTCTCCTCTCCGCGTCGTCATGACCAGGGATTTGCAACTCCCGCCCG
ACGCTAGGCTGTGGAACCACCAGCAGACTGCTCCAACCGTTGTGCTTGCT
GACGCCTCGCACGGCAGGCCTGCCTTCGCAACCGAGCTTATTGCACGTGG
CGTTAAACTCGAGCAAGTACCAGGTCTCACTGCGGACGATGCCATGGCTT
ACTTGTATGAACAGTCGTGTCTTAACGTGCTTTGGGAGTGCGGTGGAAAT
CTGGCCAGTCAAGCCGTTCGTGACGGTGCCGTGCAGAAAGTGTATGCATT
CATAGCGCCCAAAATAGTTGGCGGAACTAATTCGCCCACACCATTAGCTA
ATCCGCCAGTTGCGCCCATTATGAATCAAGCTGTTTCCCTTGAGCATACT
GCGTTCAATGTGTACGAAAACGGCGATGTGCTCGTTACCGGGTACATAAA
CAAATAG
back to top