Ggra9135.t3 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9135.t3
Unique NameGgra9135.t3
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:75555..76073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1026970.XP_008837275.1
Preferred nameCTRL
PFAMsTrypsin
Max annot lvl33208|Metazoa
KEGG koko:K09632
KEGG Pathwayko04972,ko04974,map04972,map04974
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005615,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0016787,GO:0017171,GO:0019538,GO:0030163,GO:0043170,GO:0044238,GO:0044421,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue1.67e-13
EggNOG OGsCOG5640@1|root,KOG3627@2759|Eukaryota,39RFD@33154|Opisthokonta,3B9SA@33208|Metazoa,3CVMP@33213|Bilateria,48556@7711|Chordata,49608@7742|Vertebrata,3J3UK@40674|Mammalia,35C05@314146|Euarchontoglires,4PWMP@9989|Rodentia
DescriptionTrypsin-like peptidase domain
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9135Ggra9135Gracilaria gracilis GNS1m malegenetig00000075_pilon 74776..78824 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9135.t3.stop1Ggra9135.t3.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 75555..75557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9135.t3.CDS1Ggra9135.t3.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 75555..76073 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9135.t3.exon1Ggra9135.t3.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 75555..76073 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9135.t3.start1Ggra9135.t3.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 76071..76073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9135.t3Ggra9135.t3Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 75555..76073 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9135.t3 ID=Ggra9135.t3|Name=Ggra9135.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=173bp
MSFAFKQSLVNQSVCTCFAFLVLIVIVNAGKPDLKGRPMAANLKVDKQTC
DTILPTLSRQQQQSDRPDRIVNGEDAPAMRFYMAGLAARNGGIFCSATLL
SEYWVLTAAHCPIALPDEIVRVGAANENEGTDIEIEEVFVHPNYKEDGLG
TLKNDVQLVKLKAPSRRIPSSS*
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spliced messenger RNA

>Ggra9135.t3 ID=Ggra9135.t3|Name=Ggra9135.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00000075_pilon:75555..76073- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTTCGCCTTCAAACAGTCTTTGGTCAACCAAAGCGTATGCACTTG
TTTTGCGTTTCTGGTTCTCATCGTCATCGTCAATGCTGGAAAACCAGACC
TAAAAGGCAGGCCGATGGCCGCTAATTTGAAGGTTGATAAGCAGACATGT
GACACAATTCTCCCGACTCTTTCCCGCCAGCAACAGCAATCAGACCGACC
CGACCGAATCGTTAACGGAGAGGATGCGCCGGCCATGAGGTTTTATATGG
CTGGCTTGGCAGCGCGCAACGGAGGAATTTTTTGTTCAGCTACCTTGCTC
TCTGAGTACTGGGTCTTAACGGCTGCACATTGTCCGATTGCGCTTCCGGA
TGAAATAGTCCGAGTGGGAGCCGCCAACGAGAATGAAGGAACAGATATCG
AAATCGAAGAAGTATTCGTTCATCCCAATTACAAGGAGGATGGATTGGGA
ACGTTAAAGAACGACGTGCAGTTGGTTAAGTTGAAAGCGCCGTCCCGAAG
GATTCCCAGTTCTTCTTGA
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protein sequence of Ggra9135.t3

>Ggra9135.t3 ID=Ggra9135.t3|Name=Ggra9135.t3|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=173bp
MSFAFKQSLVNQSVCTCFAFLVLIVIVNAGKPDLKGRPMAANLKVDKQTC
DTILPTLSRQQQQSDRPDRIVNGEDAPAMRFYMAGLAARNGGIFCSATLL
SEYWVLTAAHCPIALPDEIVRVGAANENEGTDIEIEEVFVHPNYKEDGLG
TLKNDVQLVKLKAPSRRIPSSS*
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mRNA from alignment at tig00000075_pilon:75555..76073-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9135.t3 ID=Ggra9135.t3|Name=Ggra9135.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00000075_pilon:75555..76073- (Gracilaria gracilis GNS1m male)
ATGTCCTTCGCCTTCAAACAGTCTTTGGTCAACCAAAGCGTATGCACTTG
TTTTGCGTTTCTGGTTCTCATCGTCATCGTCAATGCTGGAAAACCAGACC
TAAAAGGCAGGCCGATGGCCGCTAATTTGAAGGTTGATAAGCAGACATGT
GACACAATTCTCCCGACTCTTTCCCGCCAGCAACAGCAATCAGACCGACC
CGACCGAATCGTTAACGGAGAGGATGCGCCGGCCATGAGGTTTTATATGG
CTGGCTTGGCAGCGCGCAACGGAGGAATTTTTTGTTCAGCTACCTTGCTC
TCTGAGTACTGGGTCTTAACGGCTGCACATTGTCCGATTGCGCTTCCGGA
TGAAATAGTCCGAGTGGGAGCCGCCAACGAGAATGAAGGAACAGATATCG
AAATCGAAGAAGTATTCGTTCATCCCAATTACAAGGAGGATGGATTGGGA
ACGTTAAAGAACGACGTGCAGTTGGTTAAGTTGAAAGCGCCGTCCCGAAG
GATTCCCAGTTCTTCTTGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:75555..76073-

>Ggra9135.t3 ID=Ggra9135.t3|Name=Ggra9135.t3|organism=Gracilaria gracilis GNS1m male|type=CDS|length=519bp|location=Sequence derived from alignment at tig00000075_pilon:75555..76073- (Gracilaria gracilis GNS1m male)
ATGTCCTTCGCCTTCAAACAGTCTTTGGTCAACCAAAGCGTATGCACTTG
TTTTGCGTTTCTGGTTCTCATCGTCATCGTCAATGCTGGAAAACCAGACC
TAAAAGGCAGGCCGATGGCCGCTAATTTGAAGGTTGATAAGCAGACATGT
GACACAATTCTCCCGACTCTTTCCCGCCAGCAACAGCAATCAGACCGACC
CGACCGAATCGTTAACGGAGAGGATGCGCCGGCCATGAGGTTTTATATGG
CTGGCTTGGCAGCGCGCAACGGAGGAATTTTTTGTTCAGCTACCTTGCTC
TCTGAGTACTGGGTCTTAACGGCTGCACATTGTCCGATTGCGCTTCCGGA
TGAAATAGTCCGAGTGGGAGCCGCCAACGAGAATGAAGGAACAGATATCG
AAATCGAAGAAGTATTCGTTCATCCCAATTACAAGGAGGATGGATTGGGA
ACGTTAAAGAACGACGTGCAGTTGGTTAAGTTGAAAGCGCCGTCCCGAAG
GATTCCCAGTTCTTCTTGA
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