Ggra9134.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9134.t1
Unique NameGgra9134.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length281
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:73073..73915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9134Ggra9134Gracilaria gracilis GNS1m malegenetig00000075_pilon 73073..73915 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9134.t1.stop1Ggra9134.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 73073..73075 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9134.t1.CDS1Ggra9134.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 73073..73915 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9134.t1.exon1Ggra9134.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 73073..73915 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9134.t1.start1Ggra9134.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 73913..73915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9134.t1Ggra9134.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 73073..73915 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9134.t1 ID=Ggra9134.t1|Name=Ggra9134.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=281bp
MFAFAPSTALTPARVATSGSSFTPSVTPASPARKHHAAPTMALRRSLVKP
IGLPVSAFGGAAAILNKADEYMAKSVLKQYLQMSQPSGVYGVQCTEGSVK
GAAEVTRIRALNARFRARQASPFKKYGDLYENRKNAIAADHICQYEESLF
TSYPKMSSTYNLARAEASATCPRYGAPETIEEAAMMRFMDIQQNNAANPS
GVYNTSCNEGAAKGQAEDIRIAALNVAYRNGQKPIGQLLNEKYQQKKFGY
IQCHGCNYEESLVSKYPAVGASFRSRSYGY*
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spliced messenger RNA

>Ggra9134.t1 ID=Ggra9134.t1|Name=Ggra9134.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00000075_pilon:73073..73915- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCATTCGCCCCGTCCACCGCCCTCACGCCCGCCCGCGTCGCCAC
CTCCGGCAGCTCGTTCACCCCGAGCGTCACCCCCGCGTCTCCCGCCCGCA
AGCACCATGCCGCCCCGACCATGGCGCTGCGCAGGTCGCTCGTCAAGCCC
ATCGGCCTGCCCGTGTCTGCCTTCGGCGGCGCTGCCGCCATTCTGAACAA
GGCAGACGAGTACATGGCCAAGTCCGTGCTCAAGCAGTACCTCCAGATGT
CCCAACCTTCCGGGGTGTACGGCGTGCAGTGCACCGAAGGCTCCGTCAAG
GGCGCCGCTGAAGTTACCAGAATCCGTGCGCTCAACGCTCGCTTCAGGGC
CAGGCAAGCAAGCCCGTTCAAGAAGTACGGAGACCTGTATGAGAACCGTA
AGAACGCGATTGCAGCCGACCATATCTGCCAGTATGAGGAGTCTTTGTTC
ACCTCGTACCCGAAGATGTCCAGCACTTACAACCTTGCCCGCGCTGAGGC
TAGTGCTACCTGCCCTCGCTATGGCGCTCCGGAAACCATTGAGGAGGCCG
CCATGATGCGTTTCATGGACATTCAGCAGAATAATGCTGCCAACCCCTCT
GGCGTGTACAACACCTCTTGTAACGAGGGTGCTGCCAAGGGTCAAGCCGA
GGATATCCGAATTGCCGCACTCAACGTCGCCTACCGCAACGGCCAGAAGC
CAATCGGCCAGCTCTTGAATGAGAAGTACCAACAGAAGAAGTTTGGATAC
ATTCAGTGCCATGGCTGCAACTATGAAGAATCTCTTGTCAGCAAGTATCC
CGCTGTCGGTGCTTCTTTCCGTTCCAGGTCGTACGGATACTGA
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protein sequence of Ggra9134.t1

>Ggra9134.t1 ID=Ggra9134.t1|Name=Ggra9134.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=281bp
MFAFAPSTALTPARVATSGSSFTPSVTPASPARKHHAAPTMALRRSLVKP
IGLPVSAFGGAAAILNKADEYMAKSVLKQYLQMSQPSGVYGVQCTEGSVK
GAAEVTRIRALNARFRARQASPFKKYGDLYENRKNAIAADHICQYEESLF
TSYPKMSSTYNLARAEASATCPRYGAPETIEEAAMMRFMDIQQNNAANPS
GVYNTSCNEGAAKGQAEDIRIAALNVAYRNGQKPIGQLLNEKYQQKKFGY
IQCHGCNYEESLVSKYPAVGASFRSRSYGY*
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mRNA from alignment at tig00000075_pilon:73073..73915-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9134.t1 ID=Ggra9134.t1|Name=Ggra9134.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00000075_pilon:73073..73915- (Gracilaria gracilis GNS1m male)
ATGTTCGCATTCGCCCCGTCCACCGCCCTCACGCCCGCCCGCGTCGCCAC
CTCCGGCAGCTCGTTCACCCCGAGCGTCACCCCCGCGTCTCCCGCCCGCA
AGCACCATGCCGCCCCGACCATGGCGCTGCGCAGGTCGCTCGTCAAGCCC
ATCGGCCTGCCCGTGTCTGCCTTCGGCGGCGCTGCCGCCATTCTGAACAA
GGCAGACGAGTACATGGCCAAGTCCGTGCTCAAGCAGTACCTCCAGATGT
CCCAACCTTCCGGGGTGTACGGCGTGCAGTGCACCGAAGGCTCCGTCAAG
GGCGCCGCTGAAGTTACCAGAATCCGTGCGCTCAACGCTCGCTTCAGGGC
CAGGCAAGCAAGCCCGTTCAAGAAGTACGGAGACCTGTATGAGAACCGTA
AGAACGCGATTGCAGCCGACCATATCTGCCAGTATGAGGAGTCTTTGTTC
ACCTCGTACCCGAAGATGTCCAGCACTTACAACCTTGCCCGCGCTGAGGC
TAGTGCTACCTGCCCTCGCTATGGCGCTCCGGAAACCATTGAGGAGGCCG
CCATGATGCGTTTCATGGACATTCAGCAGAATAATGCTGCCAACCCCTCT
GGCGTGTACAACACCTCTTGTAACGAGGGTGCTGCCAAGGGTCAAGCCGA
GGATATCCGAATTGCCGCACTCAACGTCGCCTACCGCAACGGCCAGAAGC
CAATCGGCCAGCTCTTGAATGAGAAGTACCAACAGAAGAAGTTTGGATAC
ATTCAGTGCCATGGCTGCAACTATGAAGAATCTCTTGTCAGCAAGTATCC
CGCTGTCGGTGCTTCTTTCCGTTCCAGGTCGTACGGATACTGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:73073..73915-

>Ggra9134.t1 ID=Ggra9134.t1|Name=Ggra9134.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=843bp|location=Sequence derived from alignment at tig00000075_pilon:73073..73915- (Gracilaria gracilis GNS1m male)
ATGTTCGCATTCGCCCCGTCCACCGCCCTCACGCCCGCCCGCGTCGCCAC
CTCCGGCAGCTCGTTCACCCCGAGCGTCACCCCCGCGTCTCCCGCCCGCA
AGCACCATGCCGCCCCGACCATGGCGCTGCGCAGGTCGCTCGTCAAGCCC
ATCGGCCTGCCCGTGTCTGCCTTCGGCGGCGCTGCCGCCATTCTGAACAA
GGCAGACGAGTACATGGCCAAGTCCGTGCTCAAGCAGTACCTCCAGATGT
CCCAACCTTCCGGGGTGTACGGCGTGCAGTGCACCGAAGGCTCCGTCAAG
GGCGCCGCTGAAGTTACCAGAATCCGTGCGCTCAACGCTCGCTTCAGGGC
CAGGCAAGCAAGCCCGTTCAAGAAGTACGGAGACCTGTATGAGAACCGTA
AGAACGCGATTGCAGCCGACCATATCTGCCAGTATGAGGAGTCTTTGTTC
ACCTCGTACCCGAAGATGTCCAGCACTTACAACCTTGCCCGCGCTGAGGC
TAGTGCTACCTGCCCTCGCTATGGCGCTCCGGAAACCATTGAGGAGGCCG
CCATGATGCGTTTCATGGACATTCAGCAGAATAATGCTGCCAACCCCTCT
GGCGTGTACAACACCTCTTGTAACGAGGGTGCTGCCAAGGGTCAAGCCGA
GGATATCCGAATTGCCGCACTCAACGTCGCCTACCGCAACGGCCAGAAGC
CAATCGGCCAGCTCTTGAATGAGAAGTACCAACAGAAGAAGTTTGGATAC
ATTCAGTGCCATGGCTGCAACTATGAAGAATCTCTTGTCAGCAAGTATCC
CGCTGTCGGTGCTTCTTTCCGTTCCAGGTCGTACGGATACTGA
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