Ggra913.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra913.t1
Unique Name	Ggra913.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	432

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000049_pilon	contig	tig00000049_pilon:365078..366373 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	400682.PAC_15713168
PFAMs	PSDC,PS_Dcarbxylase
Max annot lvl	33154\|Opisthokonta
KEGG rclass	RC00299
KEGG ko	ko:K01613
KEGG Reaction	R02055
KEGG Pathway	ko00564,ko01100,ko01110,map00564,map01100,map01110
KEGG Module	M00093
Evalue	3.16e-118
EggNOG OGs	COG0688@1\|root,KOG2419@2759\|Eukaryota,39VNP@33154\|Opisthokonta
EC	4.1.1.65
Description	phosphatidylserine decarboxylase
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra913	Ggra913	Gracilaria gracilis GNS1m male	gene	tig00000049_pilon 365078..366373 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra913.t1.start1	Ggra913.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000049_pilon 365078..365080 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra913.t1.CDS1	Ggra913.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000049_pilon 365078..366373 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra913.t1.exon1	Ggra913.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000049_pilon 365078..366373 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra913.t1.stop1	Ggra913.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000049_pilon 366371..366373 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra913.t1	Ggra913.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000049_pilon 365078..366373 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000049_pilon:365078..366373+
coding sequence from alignment at tig00000049_pilon:365078..366373+

mRNA sequence

>Ggra913.t1 ID=Ggra913.t1|Name=Ggra913.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=432bp
MAPKKRLTKIPRVVQGISKGRFVGGWLPNDPEVIRAFVRKLVMKVRALKD
IQLLPCVQDYQDLIETDPRVNMGAVLMIQQQPPDEPTDPSGGPLITNYRM
MCQLINTAISEPPPYNDSGLVAFPINAIINWTMGTEAGHAYYLMSEVNDK
LKAILDFWGEYLCTSDSLVAFEDPPQGGGWMTEAAKRKLHMDWYKPGTTG
DKLAWGYPSWNDWFIREFLPGMRDVEDPDTNLTIANACESTPFRIEQNVQ
LFSEFWIKSQPYSLKFLLNNHPKAEEFVGGMVYQAFLSAFDYHRWHSPVN
GTIIHAEVVPGSYYAESPSVGKDEAGPDLSQGYISNVAARAVILIKADEP
GPGLVGFVAIGMSEVSSNVLSVEKDDPINKGQELGYFQFGGSTHCVIFKK
DVIKMWSEEAIPSTEKAFPLSATIASICEAE*

spliced messenger RNA

>Ggra913.t1 ID=Ggra913.t1|Name=Ggra913.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1296bp|location=Sequence derived from alignment at tig00000049_pilon:365078..366373+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCGAAGAAAAGATTAACCAAGATCCCTCGGGTCGTTCAGGGTAT
CTCTAAGGGCCGTTTTGTCGGGGGATGGCTACCAAACGATCCCGAGGTCA
TTCGTGCTTTTGTGAGGAAACTTGTCATGAAAGTCAGAGCCCTGAAAGAC
ATTCAGCTTCTCCCATGTGTTCAAGATTACCAGGACCTTATTGAAACCGA
TCCTCGAGTTAACATGGGTGCTGTTCTCATGATACAGCAGCAACCTCCTG
ATGAACCCACTGATCCCTCGGGTGGCCCCCTCATAACAAACTACAGAATG
ATGTGCCAGCTTATCAACACCGCCATTTCTGAACCGCCACCTTACAACGA
TTCCGGCCTTGTAGCTTTCCCGATCAACGCCATTATCAACTGGACCATGG
GTACAGAGGCTGGTCATGCGTACTATTTAATGTCTGAGGTCAATGACAAA
CTCAAAGCCATTCTTGATTTCTGGGGGGAATACTTGTGCACCTCGGACTC
TCTTGTGGCCTTCGAAGATCCTCCACAGGGTGGTGGTTGGATGACCGAAG
CCGCGAAAAGAAAACTGCACATGGATTGGTATAAACCGGGAACTACTGGA
GACAAACTTGCTTGGGGCTATCCGTCGTGGAATGACTGGTTCATCCGCGA
ATTCCTTCCGGGCATGCGTGATGTAGAAGACCCGGACACTAATCTCACCA
TCGCCAACGCATGCGAATCGACTCCTTTTAGAATTGAACAGAATGTACAG
CTCTTCTCTGAGTTCTGGATCAAGAGCCAGCCGTACTCGCTCAAATTCTT
ACTGAACAATCACCCTAAGGCTGAAGAATTCGTCGGGGGTATGGTGTACC
AGGCATTCCTTAGTGCATTCGATTACCACCGTTGGCACTCTCCCGTCAAC
GGTACGATAATTCACGCGGAAGTGGTACCCGGGTCATACTACGCCGAATC
ACCCAGCGTTGGAAAGGATGAAGCAGGCCCCGATCTCTCTCAGGGTTACA
TATCTAATGTTGCTGCACGTGCTGTCATATTAATCAAAGCAGATGAACCT
GGCCCTGGTCTAGTGGGATTTGTTGCAATAGGTATGTCTGAAGTGTCGTC
AAACGTATTGAGCGTCGAAAAAGATGATCCAATCAACAAAGGACAAGAAC
TGGGATACTTTCAGTTCGGTGGCAGCACGCACTGCGTTATCTTTAAGAAA
GATGTGATCAAAATGTGGAGTGAAGAGGCTATACCAAGCACGGAAAAAGC
GTTCCCCCTGTCAGCGACTATTGCATCTATTTGTGAGGCCGAGTAA

protein sequence of Ggra913.t1

>Ggra913.t1 ID=Ggra913.t1|Name=Ggra913.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=432bp
MAPKKRLTKIPRVVQGISKGRFVGGWLPNDPEVIRAFVRKLVMKVRALKD
IQLLPCVQDYQDLIETDPRVNMGAVLMIQQQPPDEPTDPSGGPLITNYRM
MCQLINTAISEPPPYNDSGLVAFPINAIINWTMGTEAGHAYYLMSEVNDK
LKAILDFWGEYLCTSDSLVAFEDPPQGGGWMTEAAKRKLHMDWYKPGTTG
DKLAWGYPSWNDWFIREFLPGMRDVEDPDTNLTIANACESTPFRIEQNVQ
LFSEFWIKSQPYSLKFLLNNHPKAEEFVGGMVYQAFLSAFDYHRWHSPVN
GTIIHAEVVPGSYYAESPSVGKDEAGPDLSQGYISNVAARAVILIKADEP
GPGLVGFVAIGMSEVSSNVLSVEKDDPINKGQELGYFQFGGSTHCVIFKK
DVIKMWSEEAIPSTEKAFPLSATIASICEAE*

mRNA from alignment at tig00000049_pilon:365078..366373+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra913.t1 ID=Ggra913.t1|Name=Ggra913.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1296bp|location=Sequence derived from alignment at tig00000049_pilon:365078..366373+ (Gracilaria gracilis GNS1m male)
ATGGCACCGAAGAAAAGATTAACCAAGATCCCTCGGGTCGTTCAGGGTAT
CTCTAAGGGCCGTTTTGTCGGGGGATGGCTACCAAACGATCCCGAGGTCA
TTCGTGCTTTTGTGAGGAAACTTGTCATGAAAGTCAGAGCCCTGAAAGAC
ATTCAGCTTCTCCCATGTGTTCAAGATTACCAGGACCTTATTGAAACCGA
TCCTCGAGTTAACATGGGTGCTGTTCTCATGATACAGCAGCAACCTCCTG
ATGAACCCACTGATCCCTCGGGTGGCCCCCTCATAACAAACTACAGAATG
ATGTGCCAGCTTATCAACACCGCCATTTCTGAACCGCCACCTTACAACGA
TTCCGGCCTTGTAGCTTTCCCGATCAACGCCATTATCAACTGGACCATGG
GTACAGAGGCTGGTCATGCGTACTATTTAATGTCTGAGGTCAATGACAAA
CTCAAAGCCATTCTTGATTTCTGGGGGGAATACTTGTGCACCTCGGACTC
TCTTGTGGCCTTCGAAGATCCTCCACAGGGTGGTGGTTGGATGACCGAAG
CCGCGAAAAGAAAACTGCACATGGATTGGTATAAACCGGGAACTACTGGA
GACAAACTTGCTTGGGGCTATCCGTCGTGGAATGACTGGTTCATCCGCGA
ATTCCTTCCGGGCATGCGTGATGTAGAAGACCCGGACACTAATCTCACCA
TCGCCAACGCATGCGAATCGACTCCTTTTAGAATTGAACAGAATGTACAG
CTCTTCTCTGAGTTCTGGATCAAGAGCCAGCCGTACTCGCTCAAATTCTT
ACTGAACAATCACCCTAAGGCTGAAGAATTCGTCGGGGGTATGGTGTACC
AGGCATTCCTTAGTGCATTCGATTACCACCGTTGGCACTCTCCCGTCAAC
GGTACGATAATTCACGCGGAAGTGGTACCCGGGTCATACTACGCCGAATC
ACCCAGCGTTGGAAAGGATGAAGCAGGCCCCGATCTCTCTCAGGGTTACA
TATCTAATGTTGCTGCACGTGCTGTCATATTAATCAAAGCAGATGAACCT
GGCCCTGGTCTAGTGGGATTTGTTGCAATAGGTATGTCTGAAGTGTCGTC
AAACGTATTGAGCGTCGAAAAAGATGATCCAATCAACAAAGGACAAGAAC
TGGGATACTTTCAGTTCGGTGGCAGCACGCACTGCGTTATCTTTAAGAAA
GATGTGATCAAAATGTGGAGTGAAGAGGCTATACCAAGCACGGAAAAAGC
GTTCCCCCTGTCAGCGACTATTGCATCTATTTGTGAGGCCGAGTAA

Coding sequence (CDS) from alignment at tig00000049_pilon:365078..366373+

>Ggra913.t1 ID=Ggra913.t1|Name=Ggra913.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1296bp|location=Sequence derived from alignment at tig00000049_pilon:365078..366373+ (Gracilaria gracilis GNS1m male)
ATGGCACCGAAGAAAAGATTAACCAAGATCCCTCGGGTCGTTCAGGGTAT
CTCTAAGGGCCGTTTTGTCGGGGGATGGCTACCAAACGATCCCGAGGTCA
TTCGTGCTTTTGTGAGGAAACTTGTCATGAAAGTCAGAGCCCTGAAAGAC
ATTCAGCTTCTCCCATGTGTTCAAGATTACCAGGACCTTATTGAAACCGA
TCCTCGAGTTAACATGGGTGCTGTTCTCATGATACAGCAGCAACCTCCTG
ATGAACCCACTGATCCCTCGGGTGGCCCCCTCATAACAAACTACAGAATG
ATGTGCCAGCTTATCAACACCGCCATTTCTGAACCGCCACCTTACAACGA
TTCCGGCCTTGTAGCTTTCCCGATCAACGCCATTATCAACTGGACCATGG
GTACAGAGGCTGGTCATGCGTACTATTTAATGTCTGAGGTCAATGACAAA
CTCAAAGCCATTCTTGATTTCTGGGGGGAATACTTGTGCACCTCGGACTC
TCTTGTGGCCTTCGAAGATCCTCCACAGGGTGGTGGTTGGATGACCGAAG
CCGCGAAAAGAAAACTGCACATGGATTGGTATAAACCGGGAACTACTGGA
GACAAACTTGCTTGGGGCTATCCGTCGTGGAATGACTGGTTCATCCGCGA
ATTCCTTCCGGGCATGCGTGATGTAGAAGACCCGGACACTAATCTCACCA
TCGCCAACGCATGCGAATCGACTCCTTTTAGAATTGAACAGAATGTACAG
CTCTTCTCTGAGTTCTGGATCAAGAGCCAGCCGTACTCGCTCAAATTCTT
ACTGAACAATCACCCTAAGGCTGAAGAATTCGTCGGGGGTATGGTGTACC
AGGCATTCCTTAGTGCATTCGATTACCACCGTTGGCACTCTCCCGTCAAC
GGTACGATAATTCACGCGGAAGTGGTACCCGGGTCATACTACGCCGAATC
ACCCAGCGTTGGAAAGGATGAAGCAGGCCCCGATCTCTCTCAGGGTTACA
TATCTAATGTTGCTGCACGTGCTGTCATATTAATCAAAGCAGATGAACCT
GGCCCTGGTCTAGTGGGATTTGTTGCAATAGGTATGTCTGAAGTGTCGTC
AAACGTATTGAGCGTCGAAAAAGATGATCCAATCAACAAAGGACAAGAAC
TGGGATACTTTCAGTTCGGTGGCAGCACGCACTGCGTTATCTTTAAGAAA
GATGTGATCAAAATGTGGAGTGAAGAGGCTATACCAAGCACGGAAAAAGC
GTTCCCCCTGTCAGCGACTATTGCATCTATTTGTGAGGCCGAGTAA