Ggra9127.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9127.t1
Unique NameGgra9127.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length454
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:59485..60846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706874.1
Preferred nameINT6
PFAMsPCI,eIF3_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC00868,RC00887
KEGG koko:K03250,ko:K19562
KEGG ReactionR03182,R03231
KEGG Pathwayko00780,ko01100,ko03013,ko05160,map00780,map01100,map03013,map05160
KEGG ModuleM00123
GOsGO:0000003,GO:0000184,GO:0000502,GO:0000956,GO:0001732,GO:0002181,GO:0002183,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005852,GO:0005886,GO:0006139,GO:0006351,GO:0006352,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008104,GO:0008135,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009651,GO:0009791,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009908,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016282,GO:0016604,GO:0016605,GO:0017148,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030162,GO:0030371,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032434,GO:0032436,GO:0032501,GO:0032502,GO:0032774,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0034248,GO:0034249,GO:0034250,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042176,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044464,GO:0045182,GO:0045727,GO:0045732,GO:0045862,GO:0045947,GO:0046483,GO:0046700,GO:0047485,GO:0048367,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051246,GO:0051247,GO:0051248,GO:0051641,GO:0060255,GO:0060341,GO:0061136,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070196,GO:0070727,GO:0070993,GO:0071540,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0090567,GO:0097159,GO:0097659,GO:1900180,GO:1900182,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901800,GO:1902415,GO:1902416,GO:1902494,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903827,GO:1903829,GO:1905214,GO:1905216,GO:1905368,GO:1905369,GO:1990904,GO:2000058,GO:2000060,GO:2000112,GO:2000113
Evalue3.09e-183
EggNOG OGsKOG2758@1|root,KOG2758@2759|Eukaryota
EC2.6.1.62,6.3.3.3
Descriptiontranslation initiation factor activity
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko03051,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9127Ggra9127Gracilaria gracilis GNS1m malegenetig00000075_pilon 59485..60846 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9127.t1.start1Ggra9127.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 59485..59487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9127.t1.CDS1Ggra9127.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 59485..60846 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9127.t1.exon1Ggra9127.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 59485..60846 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9127.t1.stop1Ggra9127.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 60844..60846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9127.t1Ggra9127.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 59485..60846 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9127.t1 ID=Ggra9127.t1|Name=Ggra9127.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=454bp
MEFDLTSTISEFLDRHLVIPLLDFIGQHPHMAGCYNQEDIMRAKLDLLSN
TGMVDYAIEVHQDLYGTDPPEELVTRRDRVLLALQSLSEDAGPLLKVISD
EELFTELRETNSFNLEFLSAAHGVTPDVVEAAYEFGKFQFDCGSYQDTAT
LMQVYRMLMNGSNPEREFFALWGKFAADILSFNWDEALEDMNMLREVIDA
TGRHVLLNPLQQLQHRTWLIHWSLFVFFNHRDGRNGIIDLLFSDKYLNTI
QTNCPHVLRYLTTAVITNKKRRGVLKDLVKVIQQEAYAYSDPITEFVEYL
YVNFDFEGAQDMLQNCENTLRRDFFLYRMLDDFLEDARRTIFETYCRIHQ
VIDISMLASKLNMEQDEAEKWVVNLIRNARLDAKIDSQANQVIMGVSVPS
VYEQVVDTTKNLLIRATVLAQNSDRPHGYSGGFKGDDERRSRKGSRRDTR
IAA*
back to top

spliced messenger RNA

>Ggra9127.t1 ID=Ggra9127.t1|Name=Ggra9127.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1362bp|location=Sequence derived from alignment at tig00000075_pilon:59485..60846+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTTCGATCTCACCAGTACCATCTCCGAGTTTCTGGACCGCCATCT
GGTCATCCCTCTGCTGGATTTCATCGGCCAGCACCCACACATGGCAGGTT
GCTACAATCAAGAAGACATTATGCGCGCAAAACTGGATCTGCTCTCGAAT
ACCGGAATGGTTGATTATGCCATCGAAGTGCACCAGGATCTGTACGGAAC
CGATCCTCCGGAGGAACTCGTCACCAGACGTGATCGCGTGCTTCTCGCCT
TGCAAAGCTTGAGTGAGGATGCTGGGCCCTTGTTAAAGGTTATTAGCGAC
GAGGAACTTTTCACAGAGCTTCGAGAGACCAATTCTTTTAATCTGGAGTT
TCTCTCCGCGGCTCATGGCGTTACGCCTGATGTGGTTGAAGCGGCCTATG
AGTTCGGAAAGTTCCAATTCGATTGCGGAAGTTATCAAGATACTGCAACA
CTTATGCAGGTGTATCGAATGTTGATGAATGGTTCTAATCCCGAACGAGA
ATTCTTTGCTTTGTGGGGTAAATTTGCCGCCGACATTCTGAGCTTTAACT
GGGATGAAGCCTTGGAAGATATGAATATGTTGCGAGAAGTTATTGACGCT
ACCGGTCGTCATGTCCTGCTTAACCCTCTGCAACAACTGCAGCATCGCAC
ATGGCTTATTCACTGGAGTCTTTTTGTTTTCTTCAACCATAGAGATGGCC
GAAATGGAATCATTGACCTCCTGTTCAGTGACAAATATCTCAACACAATT
CAAACTAACTGCCCTCATGTCTTACGGTACCTCACCACTGCGGTCATCAC
CAACAAGAAGAGACGTGGTGTGTTGAAAGATTTGGTCAAGGTGATCCAGC
AGGAAGCCTACGCGTACTCAGATCCCATCACGGAGTTTGTCGAGTACCTC
TACGTCAACTTTGATTTCGAAGGAGCACAGGATATGCTGCAAAACTGCGA
AAACACTCTCAGACGAGACTTTTTCCTTTACCGTATGCTTGATGATTTTC
TTGAAGATGCTCGACGCACGATTTTCGAGACGTATTGTCGCATTCATCAA
GTTATTGACATTAGCATGCTTGCAAGCAAGTTAAACATGGAGCAAGATGA
GGCTGAGAAATGGGTCGTGAATCTTATCCGAAATGCAAGGTTGGATGCCA
AGATAGACTCACAGGCAAATCAGGTTATTATGGGCGTCAGCGTACCAAGC
GTGTATGAACAGGTGGTCGATACCACCAAAAACCTGTTGATACGGGCTAC
AGTTCTGGCTCAGAACTCAGACCGACCGCACGGTTATAGTGGAGGCTTTA
AGGGAGACGATGAACGAAGAAGTAGGAAGGGTAGTCGGAGAGATACAAGA
ATAGCAGCATGA
back to top

protein sequence of Ggra9127.t1

>Ggra9127.t1 ID=Ggra9127.t1|Name=Ggra9127.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=454bp
MEFDLTSTISEFLDRHLVIPLLDFIGQHPHMAGCYNQEDIMRAKLDLLSN
TGMVDYAIEVHQDLYGTDPPEELVTRRDRVLLALQSLSEDAGPLLKVISD
EELFTELRETNSFNLEFLSAAHGVTPDVVEAAYEFGKFQFDCGSYQDTAT
LMQVYRMLMNGSNPEREFFALWGKFAADILSFNWDEALEDMNMLREVIDA
TGRHVLLNPLQQLQHRTWLIHWSLFVFFNHRDGRNGIIDLLFSDKYLNTI
QTNCPHVLRYLTTAVITNKKRRGVLKDLVKVIQQEAYAYSDPITEFVEYL
YVNFDFEGAQDMLQNCENTLRRDFFLYRMLDDFLEDARRTIFETYCRIHQ
VIDISMLASKLNMEQDEAEKWVVNLIRNARLDAKIDSQANQVIMGVSVPS
VYEQVVDTTKNLLIRATVLAQNSDRPHGYSGGFKGDDERRSRKGSRRDTR
IAA*
back to top

mRNA from alignment at tig00000075_pilon:59485..60846+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9127.t1 ID=Ggra9127.t1|Name=Ggra9127.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1362bp|location=Sequence derived from alignment at tig00000075_pilon:59485..60846+ (Gracilaria gracilis GNS1m male)
ATGGAGTTCGATCTCACCAGTACCATCTCCGAGTTTCTGGACCGCCATCT
GGTCATCCCTCTGCTGGATTTCATCGGCCAGCACCCACACATGGCAGGTT
GCTACAATCAAGAAGACATTATGCGCGCAAAACTGGATCTGCTCTCGAAT
ACCGGAATGGTTGATTATGCCATCGAAGTGCACCAGGATCTGTACGGAAC
CGATCCTCCGGAGGAACTCGTCACCAGACGTGATCGCGTGCTTCTCGCCT
TGCAAAGCTTGAGTGAGGATGCTGGGCCCTTGTTAAAGGTTATTAGCGAC
GAGGAACTTTTCACAGAGCTTCGAGAGACCAATTCTTTTAATCTGGAGTT
TCTCTCCGCGGCTCATGGCGTTACGCCTGATGTGGTTGAAGCGGCCTATG
AGTTCGGAAAGTTCCAATTCGATTGCGGAAGTTATCAAGATACTGCAACA
CTTATGCAGGTGTATCGAATGTTGATGAATGGTTCTAATCCCGAACGAGA
ATTCTTTGCTTTGTGGGGTAAATTTGCCGCCGACATTCTGAGCTTTAACT
GGGATGAAGCCTTGGAAGATATGAATATGTTGCGAGAAGTTATTGACGCT
ACCGGTCGTCATGTCCTGCTTAACCCTCTGCAACAACTGCAGCATCGCAC
ATGGCTTATTCACTGGAGTCTTTTTGTTTTCTTCAACCATAGAGATGGCC
GAAATGGAATCATTGACCTCCTGTTCAGTGACAAATATCTCAACACAATT
CAAACTAACTGCCCTCATGTCTTACGGTACCTCACCACTGCGGTCATCAC
CAACAAGAAGAGACGTGGTGTGTTGAAAGATTTGGTCAAGGTGATCCAGC
AGGAAGCCTACGCGTACTCAGATCCCATCACGGAGTTTGTCGAGTACCTC
TACGTCAACTTTGATTTCGAAGGAGCACAGGATATGCTGCAAAACTGCGA
AAACACTCTCAGACGAGACTTTTTCCTTTACCGTATGCTTGATGATTTTC
TTGAAGATGCTCGACGCACGATTTTCGAGACGTATTGTCGCATTCATCAA
GTTATTGACATTAGCATGCTTGCAAGCAAGTTAAACATGGAGCAAGATGA
GGCTGAGAAATGGGTCGTGAATCTTATCCGAAATGCAAGGTTGGATGCCA
AGATAGACTCACAGGCAAATCAGGTTATTATGGGCGTCAGCGTACCAAGC
GTGTATGAACAGGTGGTCGATACCACCAAAAACCTGTTGATACGGGCTAC
AGTTCTGGCTCAGAACTCAGACCGACCGCACGGTTATAGTGGAGGCTTTA
AGGGAGACGATGAACGAAGAAGTAGGAAGGGTAGTCGGAGAGATACAAGA
ATAGCAGCATGA
back to top

Coding sequence (CDS) from alignment at tig00000075_pilon:59485..60846+

>Ggra9127.t1 ID=Ggra9127.t1|Name=Ggra9127.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1362bp|location=Sequence derived from alignment at tig00000075_pilon:59485..60846+ (Gracilaria gracilis GNS1m male)
ATGGAGTTCGATCTCACCAGTACCATCTCCGAGTTTCTGGACCGCCATCT
GGTCATCCCTCTGCTGGATTTCATCGGCCAGCACCCACACATGGCAGGTT
GCTACAATCAAGAAGACATTATGCGCGCAAAACTGGATCTGCTCTCGAAT
ACCGGAATGGTTGATTATGCCATCGAAGTGCACCAGGATCTGTACGGAAC
CGATCCTCCGGAGGAACTCGTCACCAGACGTGATCGCGTGCTTCTCGCCT
TGCAAAGCTTGAGTGAGGATGCTGGGCCCTTGTTAAAGGTTATTAGCGAC
GAGGAACTTTTCACAGAGCTTCGAGAGACCAATTCTTTTAATCTGGAGTT
TCTCTCCGCGGCTCATGGCGTTACGCCTGATGTGGTTGAAGCGGCCTATG
AGTTCGGAAAGTTCCAATTCGATTGCGGAAGTTATCAAGATACTGCAACA
CTTATGCAGGTGTATCGAATGTTGATGAATGGTTCTAATCCCGAACGAGA
ATTCTTTGCTTTGTGGGGTAAATTTGCCGCCGACATTCTGAGCTTTAACT
GGGATGAAGCCTTGGAAGATATGAATATGTTGCGAGAAGTTATTGACGCT
ACCGGTCGTCATGTCCTGCTTAACCCTCTGCAACAACTGCAGCATCGCAC
ATGGCTTATTCACTGGAGTCTTTTTGTTTTCTTCAACCATAGAGATGGCC
GAAATGGAATCATTGACCTCCTGTTCAGTGACAAATATCTCAACACAATT
CAAACTAACTGCCCTCATGTCTTACGGTACCTCACCACTGCGGTCATCAC
CAACAAGAAGAGACGTGGTGTGTTGAAAGATTTGGTCAAGGTGATCCAGC
AGGAAGCCTACGCGTACTCAGATCCCATCACGGAGTTTGTCGAGTACCTC
TACGTCAACTTTGATTTCGAAGGAGCACAGGATATGCTGCAAAACTGCGA
AAACACTCTCAGACGAGACTTTTTCCTTTACCGTATGCTTGATGATTTTC
TTGAAGATGCTCGACGCACGATTTTCGAGACGTATTGTCGCATTCATCAA
GTTATTGACATTAGCATGCTTGCAAGCAAGTTAAACATGGAGCAAGATGA
GGCTGAGAAATGGGTCGTGAATCTTATCCGAAATGCAAGGTTGGATGCCA
AGATAGACTCACAGGCAAATCAGGTTATTATGGGCGTCAGCGTACCAAGC
GTGTATGAACAGGTGGTCGATACCACCAAAAACCTGTTGATACGGGCTAC
AGTTCTGGCTCAGAACTCAGACCGACCGCACGGTTATAGTGGAGGCTTTA
AGGGAGACGATGAACGAAGAAGTAGGAAGGGTAGTCGGAGAGATACAAGA
ATAGCAGCATGA
back to top