Ggra9125.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9125.t1
Unique Name	Ggra9125.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	715

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:54312..56456 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	517418.Ctha_1986
Preferred name	menC
PFAMs	MR_MLE_C
Max annot lvl	1090\|Chlorobi
KEGG rclass	RC01053
KEGG ko	ko:K02549
KEGG Reaction	R04031
KEGG Pathway	ko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG Module	M00116
Evalue	6.49e-27
EggNOG OGs	COG4948@1\|root,COG4948@2\|Bacteria,1FE1S@1090\|Chlorobi
EC	4.2.1.113
Description	Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB)
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9125	Ggra9125	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 54312..56456 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9125.t1.start1	Ggra9125.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 54312..54314 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9125.t1.CDS1	Ggra9125.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 54312..56456 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9125.t1.exon1	Ggra9125.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 54312..56456 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9125.t1.stop1	Ggra9125.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 56454..56456 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9125.t1	Ggra9125.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 54312..56456 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:54312..56456+
coding sequence from alignment at tig00000075_pilon:54312..56456+

mRNA sequence

>Ggra9125.t1 ID=Ggra9125.t1|Name=Ggra9125.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=715bp
MSQQQDIQLVWRQVQHNTFHADICFAPSDSSHVENRKYVVLLHGWMGHRG
DLHSLASPFVKRGYSVVAPDLPYHGDSGGEEVLSCSDAARLLSDTIPNLF
QCHEQRPLHVILVGYSLGGRIALEIAILAQEGRIDYSIHVETLVLISSAV
PPQDESERSSCRRVSISRYEKLLDKKFSVEKYEDWLRNSWYATELWGNIR
EKPFFSELVSQRVHAFSKRKRTGWALASKNMCRSTMTSISEPLQCPVLYF
YGTHDRKYAAMSIRLQKICLNIRCRPIEGAGHNIHLDSLSSLLSHIEASL
EDRSHMVVDSIPKVSEVKFVTYSIPLKQKIIVGGQEVKEREGIAVALLAT
NRCIGVGDICPLPGLHHETVGHCVKEVKDLASALQALNRPLNVMSIQDLL
MFLDLVQCYSRVSRNGFEAAFVHLLSQVLHQPISASIRMCASHFLQAEDF
TTSEFVDLNGVLPRMSKNTDPSEERPLGSQYHESVRMSPFKVMKLKVGAC
GTIEEEVKAVRKAASLANSSRKRIRLDANRAWTISEYEQFETGLKEFVEW
IEYIEEPFSTPEQLFQFLAAQPEKSCRIPLALDESLNQCPYGRIRDMASS
ELCRAFVLKPAVIGSLRHLLQLLSIAKRHDCEVVFSTVFESGIGTAWTAA
LASVLGSTDQHHGIGTFQHLVHDVIEPSFEEAVVKGGGRIWMESCEHFLC
QAASSVLDNEVVQV*

spliced messenger RNA

>Ggra9125.t1 ID=Ggra9125.t1|Name=Ggra9125.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2145bp|location=Sequence derived from alignment at tig00000075_pilon:54312..56456+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCAACAGCAAGATATACAGCTCGTTTGGAGGCAGGTCCAGCACAA
TACGTTTCACGCCGATATATGCTTTGCGCCCTCCGATTCGTCACACGTTG
AGAATCGCAAATACGTTGTTTTGCTCCACGGATGGATGGGTCATAGAGGC
GACCTTCACTCTCTCGCGTCTCCATTTGTGAAGCGTGGGTACTCTGTTGT
AGCACCAGACTTACCTTATCATGGCGACTCTGGGGGTGAAGAGGTGTTGT
CCTGTTCCGATGCGGCAAGACTCTTGTCGGACACTATACCCAACTTGTTT
CAATGTCATGAACAGAGGCCCCTGCATGTCATCCTGGTGGGTTATTCCTT
GGGAGGCCGGATCGCCTTGGAAATTGCCATATTAGCACAGGAGGGGCGCA
TAGACTACTCAATCCATGTTGAAACACTAGTTTTGATTAGTTCAGCTGTC
CCACCTCAAGACGAATCCGAAAGAAGTAGCTGTAGACGTGTTTCAATAAG
CAGATATGAGAAGCTGCTAGACAAAAAGTTCTCGGTTGAAAAGTACGAAG
ACTGGCTGAGAAATTCTTGGTATGCTACAGAATTGTGGGGCAACATTCGG
GAGAAACCGTTCTTTAGCGAGCTCGTTTCTCAGAGAGTGCACGCTTTCTC
CAAAAGGAAGAGAACTGGCTGGGCACTGGCTTCGAAGAACATGTGTCGTT
CTACGATGACTTCTATATCGGAGCCTTTGCAATGCCCCGTTCTTTATTTT
TATGGAACTCATGACAGAAAGTACGCGGCAATGTCCATCAGGCTGCAGAA
GATTTGTTTGAACATTCGCTGCCGTCCGATCGAAGGCGCCGGTCACAATA
TACATCTCGATTCACTGAGTTCGTTATTGTCTCATATAGAGGCATCCTTA
GAAGACAGAAGTCACATGGTTGTAGATTCCATTCCCAAAGTGTCAGAGGT
GAAGTTCGTAACCTATTCGATTCCCCTCAAGCAGAAAATAATTGTTGGTG
GGCAAGAAGTCAAAGAAAGGGAAGGAATTGCCGTCGCTTTACTGGCCACG
AATCGTTGCATAGGCGTAGGAGATATATGTCCGCTTCCTGGCCTTCACCA
TGAAACTGTCGGCCATTGTGTTAAAGAGGTTAAAGATCTTGCATCGGCGC
TTCAAGCTTTGAATAGACCGCTCAACGTGATGTCAATCCAAGATTTACTT
ATGTTTCTCGATTTGGTCCAGTGTTACTCTCGTGTATCAAGAAACGGATT
TGAAGCAGCTTTCGTTCACCTTCTTAGCCAAGTACTTCATCAACCGATTT
CTGCTTCGATTCGGATGTGCGCTTCACACTTTTTACAGGCTGAAGACTTC
ACAACTTCGGAGTTTGTCGACCTGAACGGTGTACTACCGAGAATGTCAAA
AAACACTGATCCGTCTGAAGAACGCCCATTAGGAAGTCAATATCATGAAT
CTGTGCGAATGTCCCCGTTCAAGGTAATGAAGTTGAAAGTTGGTGCTTGT
GGAACCATAGAAGAAGAAGTTAAAGCAGTTCGAAAAGCAGCCTCATTAGC
AAATAGTTCTAGAAAACGGATACGACTTGATGCCAATAGAGCCTGGACGA
TATCAGAATACGAACAATTCGAGACCGGTCTAAAGGAATTCGTCGAATGG
ATTGAATACATTGAGGAGCCGTTCAGCACTCCCGAGCAGCTGTTTCAGTT
CCTTGCAGCCCAGCCTGAGAAATCTTGCAGAATTCCTCTGGCTTTGGATG
AATCACTAAATCAGTGTCCATATGGCAGAATCCGAGATATGGCTTCTTCC
GAACTATGTCGGGCTTTTGTCCTGAAGCCCGCAGTAATAGGCTCGCTTCG
CCATCTTCTTCAGCTCCTGTCGATTGCGAAAAGACATGACTGCGAGGTTG
TGTTCAGCACAGTGTTCGAAAGTGGGATTGGCACAGCCTGGACCGCTGCA
CTTGCCAGTGTATTAGGGAGTACAGATCAGCATCATGGGATAGGAACTTT
TCAGCACCTGGTGCATGACGTTATCGAACCATCCTTTGAAGAAGCAGTCG
TGAAGGGAGGCGGTCGAATATGGATGGAATCGTGCGAGCATTTCCTTTGC
CAAGCGGCGAGCTCAGTCTTAGACAATGAAGTTGTACAGGTGTAG

protein sequence of Ggra9125.t1

>Ggra9125.t1 ID=Ggra9125.t1|Name=Ggra9125.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=715bp
MSQQQDIQLVWRQVQHNTFHADICFAPSDSSHVENRKYVVLLHGWMGHRG
DLHSLASPFVKRGYSVVAPDLPYHGDSGGEEVLSCSDAARLLSDTIPNLF
QCHEQRPLHVILVGYSLGGRIALEIAILAQEGRIDYSIHVETLVLISSAV
PPQDESERSSCRRVSISRYEKLLDKKFSVEKYEDWLRNSWYATELWGNIR
EKPFFSELVSQRVHAFSKRKRTGWALASKNMCRSTMTSISEPLQCPVLYF
YGTHDRKYAAMSIRLQKICLNIRCRPIEGAGHNIHLDSLSSLLSHIEASL
EDRSHMVVDSIPKVSEVKFVTYSIPLKQKIIVGGQEVKEREGIAVALLAT
NRCIGVGDICPLPGLHHETVGHCVKEVKDLASALQALNRPLNVMSIQDLL
MFLDLVQCYSRVSRNGFEAAFVHLLSQVLHQPISASIRMCASHFLQAEDF
TTSEFVDLNGVLPRMSKNTDPSEERPLGSQYHESVRMSPFKVMKLKVGAC
GTIEEEVKAVRKAASLANSSRKRIRLDANRAWTISEYEQFETGLKEFVEW
IEYIEEPFSTPEQLFQFLAAQPEKSCRIPLALDESLNQCPYGRIRDMASS
ELCRAFVLKPAVIGSLRHLLQLLSIAKRHDCEVVFSTVFESGIGTAWTAA
LASVLGSTDQHHGIGTFQHLVHDVIEPSFEEAVVKGGGRIWMESCEHFLC
QAASSVLDNEVVQV*

mRNA from alignment at tig00000075_pilon:54312..56456+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9125.t1 ID=Ggra9125.t1|Name=Ggra9125.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2145bp|location=Sequence derived from alignment at tig00000075_pilon:54312..56456+ (Gracilaria gracilis GNS1m male)
ATGTCCCAACAGCAAGATATACAGCTCGTTTGGAGGCAGGTCCAGCACAA
TACGTTTCACGCCGATATATGCTTTGCGCCCTCCGATTCGTCACACGTTG
AGAATCGCAAATACGTTGTTTTGCTCCACGGATGGATGGGTCATAGAGGC
GACCTTCACTCTCTCGCGTCTCCATTTGTGAAGCGTGGGTACTCTGTTGT
AGCACCAGACTTACCTTATCATGGCGACTCTGGGGGTGAAGAGGTGTTGT
CCTGTTCCGATGCGGCAAGACTCTTGTCGGACACTATACCCAACTTGTTT
CAATGTCATGAACAGAGGCCCCTGCATGTCATCCTGGTGGGTTATTCCTT
GGGAGGCCGGATCGCCTTGGAAATTGCCATATTAGCACAGGAGGGGCGCA
TAGACTACTCAATCCATGTTGAAACACTAGTTTTGATTAGTTCAGCTGTC
CCACCTCAAGACGAATCCGAAAGAAGTAGCTGTAGACGTGTTTCAATAAG
CAGATATGAGAAGCTGCTAGACAAAAAGTTCTCGGTTGAAAAGTACGAAG
ACTGGCTGAGAAATTCTTGGTATGCTACAGAATTGTGGGGCAACATTCGG
GAGAAACCGTTCTTTAGCGAGCTCGTTTCTCAGAGAGTGCACGCTTTCTC
CAAAAGGAAGAGAACTGGCTGGGCACTGGCTTCGAAGAACATGTGTCGTT
CTACGATGACTTCTATATCGGAGCCTTTGCAATGCCCCGTTCTTTATTTT
TATGGAACTCATGACAGAAAGTACGCGGCAATGTCCATCAGGCTGCAGAA
GATTTGTTTGAACATTCGCTGCCGTCCGATCGAAGGCGCCGGTCACAATA
TACATCTCGATTCACTGAGTTCGTTATTGTCTCATATAGAGGCATCCTTA
GAAGACAGAAGTCACATGGTTGTAGATTCCATTCCCAAAGTGTCAGAGGT
GAAGTTCGTAACCTATTCGATTCCCCTCAAGCAGAAAATAATTGTTGGTG
GGCAAGAAGTCAAAGAAAGGGAAGGAATTGCCGTCGCTTTACTGGCCACG
AATCGTTGCATAGGCGTAGGAGATATATGTCCGCTTCCTGGCCTTCACCA
TGAAACTGTCGGCCATTGTGTTAAAGAGGTTAAAGATCTTGCATCGGCGC
TTCAAGCTTTGAATAGACCGCTCAACGTGATGTCAATCCAAGATTTACTT
ATGTTTCTCGATTTGGTCCAGTGTTACTCTCGTGTATCAAGAAACGGATT
TGAAGCAGCTTTCGTTCACCTTCTTAGCCAAGTACTTCATCAACCGATTT
CTGCTTCGATTCGGATGTGCGCTTCACACTTTTTACAGGCTGAAGACTTC
ACAACTTCGGAGTTTGTCGACCTGAACGGTGTACTACCGAGAATGTCAAA
AAACACTGATCCGTCTGAAGAACGCCCATTAGGAAGTCAATATCATGAAT
CTGTGCGAATGTCCCCGTTCAAGGTAATGAAGTTGAAAGTTGGTGCTTGT
GGAACCATAGAAGAAGAAGTTAAAGCAGTTCGAAAAGCAGCCTCATTAGC
AAATAGTTCTAGAAAACGGATACGACTTGATGCCAATAGAGCCTGGACGA
TATCAGAATACGAACAATTCGAGACCGGTCTAAAGGAATTCGTCGAATGG
ATTGAATACATTGAGGAGCCGTTCAGCACTCCCGAGCAGCTGTTTCAGTT
CCTTGCAGCCCAGCCTGAGAAATCTTGCAGAATTCCTCTGGCTTTGGATG
AATCACTAAATCAGTGTCCATATGGCAGAATCCGAGATATGGCTTCTTCC
GAACTATGTCGGGCTTTTGTCCTGAAGCCCGCAGTAATAGGCTCGCTTCG
CCATCTTCTTCAGCTCCTGTCGATTGCGAAAAGACATGACTGCGAGGTTG
TGTTCAGCACAGTGTTCGAAAGTGGGATTGGCACAGCCTGGACCGCTGCA
CTTGCCAGTGTATTAGGGAGTACAGATCAGCATCATGGGATAGGAACTTT
TCAGCACCTGGTGCATGACGTTATCGAACCATCCTTTGAAGAAGCAGTCG
TGAAGGGAGGCGGTCGAATATGGATGGAATCGTGCGAGCATTTCCTTTGC
CAAGCGGCGAGCTCAGTCTTAGACAATGAAGTTGTACAGGTGTAG

Coding sequence (CDS) from alignment at tig00000075_pilon:54312..56456+

>Ggra9125.t1 ID=Ggra9125.t1|Name=Ggra9125.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2145bp|location=Sequence derived from alignment at tig00000075_pilon:54312..56456+ (Gracilaria gracilis GNS1m male)
ATGTCCCAACAGCAAGATATACAGCTCGTTTGGAGGCAGGTCCAGCACAA
TACGTTTCACGCCGATATATGCTTTGCGCCCTCCGATTCGTCACACGTTG
AGAATCGCAAATACGTTGTTTTGCTCCACGGATGGATGGGTCATAGAGGC
GACCTTCACTCTCTCGCGTCTCCATTTGTGAAGCGTGGGTACTCTGTTGT
AGCACCAGACTTACCTTATCATGGCGACTCTGGGGGTGAAGAGGTGTTGT
CCTGTTCCGATGCGGCAAGACTCTTGTCGGACACTATACCCAACTTGTTT
CAATGTCATGAACAGAGGCCCCTGCATGTCATCCTGGTGGGTTATTCCTT
GGGAGGCCGGATCGCCTTGGAAATTGCCATATTAGCACAGGAGGGGCGCA
TAGACTACTCAATCCATGTTGAAACACTAGTTTTGATTAGTTCAGCTGTC
CCACCTCAAGACGAATCCGAAAGAAGTAGCTGTAGACGTGTTTCAATAAG
CAGATATGAGAAGCTGCTAGACAAAAAGTTCTCGGTTGAAAAGTACGAAG
ACTGGCTGAGAAATTCTTGGTATGCTACAGAATTGTGGGGCAACATTCGG
GAGAAACCGTTCTTTAGCGAGCTCGTTTCTCAGAGAGTGCACGCTTTCTC
CAAAAGGAAGAGAACTGGCTGGGCACTGGCTTCGAAGAACATGTGTCGTT
CTACGATGACTTCTATATCGGAGCCTTTGCAATGCCCCGTTCTTTATTTT
TATGGAACTCATGACAGAAAGTACGCGGCAATGTCCATCAGGCTGCAGAA
GATTTGTTTGAACATTCGCTGCCGTCCGATCGAAGGCGCCGGTCACAATA
TACATCTCGATTCACTGAGTTCGTTATTGTCTCATATAGAGGCATCCTTA
GAAGACAGAAGTCACATGGTTGTAGATTCCATTCCCAAAGTGTCAGAGGT
GAAGTTCGTAACCTATTCGATTCCCCTCAAGCAGAAAATAATTGTTGGTG
GGCAAGAAGTCAAAGAAAGGGAAGGAATTGCCGTCGCTTTACTGGCCACG
AATCGTTGCATAGGCGTAGGAGATATATGTCCGCTTCCTGGCCTTCACCA
TGAAACTGTCGGCCATTGTGTTAAAGAGGTTAAAGATCTTGCATCGGCGC
TTCAAGCTTTGAATAGACCGCTCAACGTGATGTCAATCCAAGATTTACTT
ATGTTTCTCGATTTGGTCCAGTGTTACTCTCGTGTATCAAGAAACGGATT
TGAAGCAGCTTTCGTTCACCTTCTTAGCCAAGTACTTCATCAACCGATTT
CTGCTTCGATTCGGATGTGCGCTTCACACTTTTTACAGGCTGAAGACTTC
ACAACTTCGGAGTTTGTCGACCTGAACGGTGTACTACCGAGAATGTCAAA
AAACACTGATCCGTCTGAAGAACGCCCATTAGGAAGTCAATATCATGAAT
CTGTGCGAATGTCCCCGTTCAAGGTAATGAAGTTGAAAGTTGGTGCTTGT
GGAACCATAGAAGAAGAAGTTAAAGCAGTTCGAAAAGCAGCCTCATTAGC
AAATAGTTCTAGAAAACGGATACGACTTGATGCCAATAGAGCCTGGACGA
TATCAGAATACGAACAATTCGAGACCGGTCTAAAGGAATTCGTCGAATGG
ATTGAATACATTGAGGAGCCGTTCAGCACTCCCGAGCAGCTGTTTCAGTT
CCTTGCAGCCCAGCCTGAGAAATCTTGCAGAATTCCTCTGGCTTTGGATG
AATCACTAAATCAGTGTCCATATGGCAGAATCCGAGATATGGCTTCTTCC
GAACTATGTCGGGCTTTTGTCCTGAAGCCCGCAGTAATAGGCTCGCTTCG
CCATCTTCTTCAGCTCCTGTCGATTGCGAAAAGACATGACTGCGAGGTTG
TGTTCAGCACAGTGTTCGAAAGTGGGATTGGCACAGCCTGGACCGCTGCA
CTTGCCAGTGTATTAGGGAGTACAGATCAGCATCATGGGATAGGAACTTT
TCAGCACCTGGTGCATGACGTTATCGAACCATCCTTTGAAGAAGCAGTCG
TGAAGGGAGGCGGTCGAATATGGATGGAATCGTGCGAGCATTTCCTTTGC
CAAGCGGCGAGCTCAGTCTTAGACAATGAAGTTGTACAGGTGTAG