Ggra9122.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9122.t1
Unique NameGgra9122.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length382
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:45584..48928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD30412
Preferred namePSMC5
PFAMsAAA
Max annot lvl2759|Eukaryota
KEGG koko:K03066
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000166,GO:0000428,GO:0000502,GO:0001664,GO:0003674,GO:0003824,GO:0004175,GO:0004176,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006401,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007088,GO:0007346,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008540,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010941,GO:0010965,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016075,GO:0016234,GO:0016462,GO:0016579,GO:0016591,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017025,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019904,GO:0019941,GO:0022607,GO:0022624,GO:0023051,GO:0030071,GO:0030162,GO:0030163,GO:0030433,GO:0030554,GO:0030880,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031410,GO:0031531,GO:0031595,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032436,GO:0032553,GO:0032555,GO:0032559,GO:0032784,GO:0032786,GO:0032806,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0034243,GO:0034515,GO:0034622,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0035639,GO:0036094,GO:0036211,GO:0036402,GO:0036503,GO:0042176,GO:0042221,GO:0042623,GO:0042802,GO:0043067,GO:0043069,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043254,GO:0043412,GO:0043433,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044456,GO:0044464,GO:0044798,GO:0045202,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045892,GO:0045893,GO:0045898,GO:0045899,GO:0045931,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050804,GO:0050896,GO:0051090,GO:0051091,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051427,GO:0051428,GO:0051603,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0055029,GO:0060255,GO:0060260,GO:0060261,GO:0060548,GO:0061136,GO:0061695,GO:0062033,GO:0065003,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0070651,GO:0070682,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090068,GO:0090083,GO:0090261,GO:0090304,GO:0090575,GO:0097159,GO:0097367,GO:0097708,GO:0098794,GO:0099170,GO:0099177,GO:0099574,GO:0099576,GO:0140096,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902554,GO:1902679,GO:1902680,GO:1902911,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903507,GO:1903508,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990234,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2001141,GO:2001252
Evalue2.52e-41
EggNOG OGsCOG0554@1|root,KOG0728@2759|Eukaryota
Descriptionproteasome-activating ATPase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9122Ggra9122Gracilaria gracilis GNS1m malegenetig00000075_pilon 45584..48928 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9122.t1Ggra9122.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 45584..48928 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9122.t1.stop1Ggra9122.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 45584..45586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9122.t1.CDS1Ggra9122.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 45584..46294 -
Ggra9122.t1.CDS2Ggra9122.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 48494..48928 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9122.t1.exon1Ggra9122.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 45584..46294 -
Ggra9122.t1.exon2Ggra9122.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 48494..48928 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9122.t1.intron1Ggra9122.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 46295..48493 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9122.t1.start1Ggra9122.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 48926..48928 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9122.t1 ID=Ggra9122.t1|Name=Ggra9122.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=382bp
MATADTMKTGVPTTMESGLSIGLKSYYQTKMDQLESRIRERQENLRRLQA
QRNELNSRVRDLREELQLLQEPGGYVGEVVKIMGRKKVLVKVHPEGKYIV
DVDSSIDITKLPSTARVALRNDSYTLYKVLPSKVDPLVSLMRVENSEEKA
LLEGPVDCRTLDSADDAARTVKEMVTMMKNMDPEVVRRLVQARTAAEGIH
LAFPGGDQRFTEMDCDMDDMDNDENVEEHEIPFTGSSDKPPNDDRQEEED
VCYGLLDNSLYRSPEVCLMKTKENFGFDIVSDMNNAGVNLIERIRLVNYI
RKLKNENVPTEDIINRARRVLSERNEDVLDNDALLIPVVEGDLLLTTLET
GDEFDDDSRLEASAVRDAVEASLREERIIPE*
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spliced messenger RNA

>Ggra9122.t1 ID=Ggra9122.t1|Name=Ggra9122.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000075_pilon:45584..48928- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACCGCAGACACCATGAAGACTGGTGTCCCTACCACAATGGAATC
TGGACTGAGTATTGGTTTAAAGTCCTACTATCAAACCAAGATGGATCAGC
TCGAAAGCAGAATCCGCGAAAGACAAGAAAATCTTCGTCGTTTACAAGCG
CAACGCAATGAGCTCAATTCAAGAGTTCGCGATCTACGCGAGGAATTGCA
GCTACTGCAGGAGCCAGGTGGATACGTCGGTGAAGTGGTTAAGATAATGG
GTAGGAAAAAGGTTCTAGTCAAGGTTCATCCTGAAGGCAAGTACATCGTC
GATGTTGATAGTTCCATTGACATCACAAAGCTTCCATCAACAGCTCGCGT
CGCCCTGAGGAACGATTCTTATACGCTTTACAAGGTTTTGCCGAGTAAAG
TCGATCCGTTGGTCTCGCTAATGAGGGTGGAAAATTCAGAGGAAAAGGCG
TTGCTGGAAGGCCCAGTGGACTGCAGAACACTTGACTCTGCCGACGACGC
TGCGAGAACAGTAAAGGAAATGGTGACCATGATGAAGAACATGGATCCTG
AGGTAGTGAGAAGACTTGTTCAGGCTAGGACTGCTGCAGAGGGCATTCAC
CTCGCCTTTCCCGGAGGTGACCAGAGATTCACAGAAATGGATTGTGACAT
GGATGATATGGATAACGATGAAAATGTTGAAGAGCATGAAATACCATTCA
CAGGGTCTTCAGATAAACCACCAAACGATGACCGCCAAGAAGAGGAAGAC
GTTTGTTATGGTTTATTGGACAACTCACTGTATCGCAGCCCGGAAGTTTG
TCTTATGAAGACTAAAGAAAACTTTGGTTTTGATATTGTTTCTGATATGA
ATAATGCTGGTGTCAACCTTATTGAACGAATACGGCTAGTGAACTATATC
AGAAAGCTCAAAAACGAAAACGTTCCGACAGAAGACATCATAAATCGCGC
TCGGAGGGTACTTTCTGAGCGAAACGAAGACGTATTGGACAACGATGCAC
TGCTGATACCCGTTGTAGAAGGAGACCTTTTGCTTACTACATTGGAAACA
GGAGATGAGTTTGATGACGATTCTCGTCTGGAGGCTTCGGCAGTTCGGGA
TGCTGTGGAAGCATCTCTACGGGAGGAGCGAATCATACCGGAATGA
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protein sequence of Ggra9122.t1

>Ggra9122.t1 ID=Ggra9122.t1|Name=Ggra9122.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=382bp
MATADTMKTGVPTTMESGLSIGLKSYYQTKMDQLESRIRERQENLRRLQA
QRNELNSRVRDLREELQLLQEPGGYVGEVVKIMGRKKVLVKVHPEGKYIV
DVDSSIDITKLPSTARVALRNDSYTLYKVLPSKVDPLVSLMRVENSEEKA
LLEGPVDCRTLDSADDAARTVKEMVTMMKNMDPEVVRRLVQARTAAEGIH
LAFPGGDQRFTEMDCDMDDMDNDENVEEHEIPFTGSSDKPPNDDRQEEED
VCYGLLDNSLYRSPEVCLMKTKENFGFDIVSDMNNAGVNLIERIRLVNYI
RKLKNENVPTEDIINRARRVLSERNEDVLDNDALLIPVVEGDLLLTTLET
GDEFDDDSRLEASAVRDAVEASLREERIIPE*
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mRNA from alignment at tig00000075_pilon:45584..48928-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9122.t1 ID=Ggra9122.t1|Name=Ggra9122.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3345bp|location=Sequence derived from alignment at tig00000075_pilon:45584..48928- (Gracilaria gracilis GNS1m male)
ATGGCTACCGCAGACACCATGAAGACTGGTGTCCCTACCACAATGGAATC
TGGACTGAGTATTGGTTTAAAGTCCTACTATCAAACCAAGATGGATCAGC
TCGAAAGCAGAATCCGCGAAAGACAAGAAAATCTTCGTCGTTTACAAGCG
CAACGCAATGAGCTCAATTCAAGAGTTCGCGATCTACGCGAGGAATTGCA
GCTACTGCAGGAGCCAGGTGGATACGTCGGTGAAGTGGTTAAGATAATGG
GTAGGAAAAAGGTTCTAGTCAAGGTTCATCCTGAAGGCAAGTACATCGTC
GATGTTGATAGTTCCATTGACATCACAAAGCTTCCATCAACAGCTCGCGT
CGCCCTGAGGAACGATTCTTATACGCTTTACAAGGTTTTGCCGAGTAAAG
TCGATCCGTTGGTCTCGCTAATGAGGGTGGAAAATGTACCTGATTCCACA
TACGAAATGATTGGCGGTCTAGATGAGCAACTCAAAGCTATTCGTGAAGT
CATTGAACTTCCTGTTCTGCACCCGGAGCTGTTTGATGCACTTGGTATCG
CTCAGCCCAAAGGTGTACTTCTGTACGGCCCCCCTGGAACGGGAAAGACG
CTTTTGGCTCGTGCTGTTGCGCATCATACCAAGTGCACATTCATTCGCGT
CTCAGGTTCGGAACTTGTGCAGAAATATATCGGAGAAGGTAGTCGAATGG
TTCGTGAGCTCTTTGTAATGGCACGTGAACATGCCCCGTCCATTATATTT
ATGGATGAGATTGATTCCATTGGTTCCACTCGAATGAACAGCAGTGGTAG
TGGTGGTGGTGATTCTGAAGTCCAGAGAACTATGCTTGAGTTGCTCAATC
AATTAGACGGTTTCGAAGCTACCAAGAACATCAAAGTTCTAATGGCGACA
AACAGGCTTGACATTCTTGACTCTGCACTTCTGAGGCCTGGAAGAATTGA
CAGGAAGATCGAATTTCCGGCCCCCAACGAGGAGGCTCGGAAGCAAATCT
TGAAGATCCACTCACGGAAAATGAATCTCATGCGTGGTATCGATCTCGCA
AAAATTGCCAAGAAGATGTCAGGCGCATCCGGAGCAGAGACGAAGGCAGT
TTGTACTGAAGCTGGTATGTTTGCTCTTCGGGAACGTCGTCTATACGTGC
AGCAGGAGGACTTTGAACTTGCAGTAGCCAAGGTAATGCGAAAAGATCGC
GACCAGAGTGAGTCTTTGCGGAGGTTATGGAAGTAAGTTGCTTATGTACC
TAAAGTGTGTCGCAATGTATGGAACAATCAGTACTCTTTAAAGCGTAACC
TTTCGGTCCCGACCATTGTACCAAGAATCTAGGGACGTCCTGCGATGTAT
CGTCGAGACCGGTTTGACATTTTGCAATCCCAATTCTAGTTTACATGGTG
AGAGGAACGTCTTCTGCTCTAACGGCTTGCTCCAAGGGTATTACGGACGA
AAGATCTTTGTCACGACTTAGCGCTTTCCGCATATCATAGGCATCTTCGT
TACCCCCATAATAATTCAGAATTGTTCGATATACGACATAGCCCATCTTT
TTATACATCGAGATGGCGAGGGAATTAGACTTCCGCACAAATAAATCGAC
GAAGTAACAGTTGTACGTCTCATCTGACAAGCTCTCAGTAAAGCTCATTA
ACTTGGATGCTAAACTCAACCTACGATACTCTGGGGCAACAGTTACGGCA
GATACATGCCCGTGCCATTCACGACCGCGACCTTCCGCTTTGCCAATAAC
ATACGCCATCATTGTTCCATCGGGAGAAGTCACTGTCTGCTGAAATTCAG
GCCACCTTAGCATGTACTGGAAATAAAAATGTAGGTTGTACGTCTCGGTG
AGTTTATCAAGATTAACAGGGTTTATCTGAAACAGATCACACGGTCGAAA
TCGTCGTGTTGAAGACATTTGCGCGAACCCGAACACCTTCCAGACGTTCC
AGGTAAAAAACGCAAACGAATCTACCTTCGAAGTTACGGAAGCACGGCTT
GGTGTGAAACCGTCGAGAGATCTATACGTCAACGAAACGTAGTGCTCATT
CGCGGTCCGTTTTCACGCACCCCAATATCCGGTATGAACGGAAGTGCGTC
TTCGATTGTCGCCAGACGGGGTAGAGGAAGGCCGTGGGTCAACTTTGACT
TGGCCCTGCCTCACGGGTAAATAATATTTACTACTGTACCAAGGGTAAAT
ATCATGCAGAGTCTGAATTGCAGACTACAAAACCTCCCTTTGCATAATGT
GACAGGTGTACTGTTGTAACCTTGGTAAGTCAGAATAGCGCAAAATCTAC
ACGTATAGAAAACTAGATCGGCAAGAACCCGGATGGAAGAAATGAAGAAT
AGCCAGCGATTGCATGCAGCCAATCTCGAGAAACTACCGTTGGTAAGGTT
ACTTCGTATTTCGGCTTTCCTATCTACTCGTCAAACATTCCGAACTGTTC
GAGAAGTCATAATTTCAGTTAGGAAACGTTGAGTGGTACCGTTGTGTTTA
AATTCTTGTTTGACCGTTCTTCTCGCTCGTAGCAGAGTGCTTGCGAAACC
AAAACTTCGCTCCGACATTGTTCTCCAGTAGAGTGAAAATAAACGGTCAG
GTGTCTGATGGTATCCCCTGCGCCTGAAAGGCAGTCAGAGGAAAAGGCGT
TGCTGGAAGGCCCAGTGGACTGCAGAACACTTGACTCTGCCGACGACGCT
GCGAGAACAGTAAAGGAAATGGTGACCATGATGAAGAACATGGATCCTGA
GGTAGTGAGAAGACTTGTTCAGGCTAGGACTGCTGCAGAGGGCATTCACC
TCGCCTTTCCCGGAGGTGACCAGAGATTCACAGAAATGGATTGTGACATG
GATGATATGGATAACGATGAAAATGTTGAAGAGCATGAAATACCATTCAC
AGGGTCTTCAGATAAACCACCAAACGATGACCGCCAAGAAGAGGAAGACG
TTTGTTATGGTTTATTGGACAACTCACTGTATCGCAGCCCGGAAGTTTGT
CTTATGAAGACTAAAGAAAACTTTGGTTTTGATATTGTTTCTGATATGAA
TAATGCTGGTGTCAACCTTATTGAACGAATACGGCTAGTGAACTATATCA
GAAAGCTCAAAAACGAAAACGTTCCGACAGAAGACATCATAAATCGCGCT
CGGAGGGTACTTTCTGAGCGAAACGAAGACGTATTGGACAACGATGCACT
GCTGATACCCGTTGTAGAAGGAGACCTTTTGCTTACTACATTGGAAACAG
GAGATGAGTTTGATGACGATTCTCGTCTGGAGGCTTCGGCAGTTCGGGAT
GCTGTGGAAGCATCTCTACGGGAGGAGCGAATCATACCGGAATGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:45584..48928-

>Ggra9122.t1 ID=Ggra9122.t1|Name=Ggra9122.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1146bp|location=Sequence derived from alignment at tig00000075_pilon:45584..48928- (Gracilaria gracilis GNS1m male)
ATGGCTACCGCAGACACCATGAAGACTGGTGTCCCTACCACAATGGAATC
TGGACTGAGTATTGGTTTAAAGTCCTACTATCAAACCAAGATGGATCAGC
TCGAAAGCAGAATCCGCGAAAGACAAGAAAATCTTCGTCGTTTACAAGCG
CAACGCAATGAGCTCAATTCAAGAGTTCGCGATCTACGCGAGGAATTGCA
GCTACTGCAGGAGCCAGGTGGATACGTCGGTGAAGTGGTTAAGATAATGG
GTAGGAAAAAGGTTCTAGTCAAGGTTCATCCTGAAGGCAAGTACATCGTC
GATGTTGATAGTTCCATTGACATCACAAAGCTTCCATCAACAGCTCGCGT
CGCCCTGAGGAACGATTCTTATACGCTTTACAAGGTTTTGCCGAGTAAAG
TCGATCCGTTGGTCTCGCTAATGAGGGTGGAAAATTCAGAGGAAAAGGCG
TTGCTGGAAGGCCCAGTGGACTGCAGAACACTTGACTCTGCCGACGACGC
TGCGAGAACAGTAAAGGAAATGGTGACCATGATGAAGAACATGGATCCTG
AGGTAGTGAGAAGACTTGTTCAGGCTAGGACTGCTGCAGAGGGCATTCAC
CTCGCCTTTCCCGGAGGTGACCAGAGATTCACAGAAATGGATTGTGACAT
GGATGATATGGATAACGATGAAAATGTTGAAGAGCATGAAATACCATTCA
CAGGGTCTTCAGATAAACCACCAAACGATGACCGCCAAGAAGAGGAAGAC
GTTTGTTATGGTTTATTGGACAACTCACTGTATCGCAGCCCGGAAGTTTG
TCTTATGAAGACTAAAGAAAACTTTGGTTTTGATATTGTTTCTGATATGA
ATAATGCTGGTGTCAACCTTATTGAACGAATACGGCTAGTGAACTATATC
AGAAAGCTCAAAAACGAAAACGTTCCGACAGAAGACATCATAAATCGCGC
TCGGAGGGTACTTTCTGAGCGAAACGAAGACGTATTGGACAACGATGCAC
TGCTGATACCCGTTGTAGAAGGAGACCTTTTGCTTACTACATTGGAAACA
GGAGATGAGTTTGATGACGATTCTCGTCTGGAGGCTTCGGCAGTTCGGGA
TGCTGTGGAAGCATCTCTACGGGAGGAGCGAATCATACCGGAATGA
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