Ggra9114.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9114.t1
Unique NameGgra9114.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length85
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:13556..14215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4513.MLOC_51200.1
Max annot lvl35493|Streptophyta
Evalue5.2e-08
EggNOG OGs2CVGS@1|root,2S4GF@2759|Eukaryota,37W8B@33090|Viridiplantae,3GK4N@35493|Streptophyta,3M0K2@4447|Liliopsida,3IIBE@38820|Poales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9114Ggra9114Gracilaria gracilis GNS1m malegenetig00000075_pilon 13556..14215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9114.t1Ggra9114.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 13556..14215 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9114.t1.start1Ggra9114.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 13556..13558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9114.t1.CDS1Ggra9114.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 13556..13570 +
Ggra9114.t1.CDS2Ggra9114.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 13719..13793 +
Ggra9114.t1.CDS3Ggra9114.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000075_pilon 13900..13987 +
Ggra9114.t1.CDS4Ggra9114.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000075_pilon 14139..14215 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9114.t1.exon1Ggra9114.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 13556..13570 +
Ggra9114.t1.exon2Ggra9114.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 13719..13793 +
Ggra9114.t1.exon3Ggra9114.t1.exon3Gracilaria gracilis GNS1m maleexontig00000075_pilon 13900..13987 +
Ggra9114.t1.exon4Ggra9114.t1.exon4Gracilaria gracilis GNS1m maleexontig00000075_pilon 14139..14215 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9114.t1.intron1Ggra9114.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 13571..13718 +
Ggra9114.t1.intron2Ggra9114.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000075_pilon 13794..13899 +
Ggra9114.t1.intron3Ggra9114.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000075_pilon 13988..14138 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9114.t1.stop1Ggra9114.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 14213..14215 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9114.t1 ID=Ggra9114.t1|Name=Ggra9114.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=85bp
MSAPLMNATARQLSRAAATRAFHTTRAAQAGGGYDYLHAQYMYKLRFKPA
PKLLTAVLIGGGVSAGIGIPLFAVWFGQKKAGLV*
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spliced messenger RNA

>Ggra9114.t1 ID=Ggra9114.t1|Name=Ggra9114.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=255bp|location=Sequence derived from alignment at tig00000075_pilon:13556..14215+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atGTCCGCGCCGCTGATGAACGCCACCGCGCGACAGCTCTCTCGCGCCGC
CGCCACGCGCGCCTTTCACACCACGCGCGCCGCTCAAGCCGGCGGCGGAT
ACGACTATCTGCACGCGCAATACATGTACAAGCTGCGCTTCAAACCGGCG
CCCAAGCTGCTCACCGCCGTCTTGATTGGCGGCGGCGTCTCGGCCGGTAT
TGGCATCCCGCTGTTTGCCGTGTGGTTCGGCCAGAAGAAGGCGGGCCTTG
TCTAG
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protein sequence of Ggra9114.t1

>Ggra9114.t1 ID=Ggra9114.t1|Name=Ggra9114.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=85bp
MSAPLMNATARQLSRAAATRAFHTTRAAQAGGGYDYLHAQYMYKLRFKPA
PKLLTAVLIGGGVSAGIGIPLFAVWFGQKKAGLV*
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mRNA from alignment at tig00000075_pilon:13556..14215+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9114.t1 ID=Ggra9114.t1|Name=Ggra9114.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00000075_pilon:13556..14215+ (Gracilaria gracilis GNS1m male)
atGTCCGCGCCGCTGGTACGTTATCGCCAATGCGcgcgcatcgcgcatcg
cgcatcgcgcatcgcgcatcgcgcatcgcCAACAGCCCGGCCGTGGTCTG
ACTTTAGTTTGGATGCGACTGCCACTGCCACTGCCACTGCGATACTGCGA
TACGCGCCAAAAGATGAACGCCACCGCGCGACAGCTCTCTCGCGCCGCCG
CCACGCGCGCCTTTCACACCACGCGCGCCGCTCAAGCCGTACGTTGTTCA
AcgcgccgcgcgcgcgcgcgcctgtttcgccgcgcgcacacgcCCCGCTG
ACTCAGCGCTCTGCTTTTCTGCTCGCCGCTCGCGCGCTTTGTAGGGCGGC
GGATACGACTATCTGCACGCGCAATACATGTACAAGCTGCGCTTCAAACC
GGCGCCCAAGCTGCTCACCGCCGTCTTGATTGGTACGTGCACActctctc
tctctctctttctctttctctctttctcGGCGCTGCTCACACCGCTCGTG
GACGCTGACCCCCTTTTCGCACCCGCGCGCTGCCCGTGCCCTgcaccgca
ccgcaccgcaccgcaccgcacGCAACTTGACAGGCGGCGGCGTCTCGGCC
GGTATTGGCATCCCGCTGTTTGCCGTGTGGTTCGGCCAGAAGAAGGCGGG
CCTTGTCTAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:13556..14215+

>Ggra9114.t1 ID=Ggra9114.t1|Name=Ggra9114.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=255bp|location=Sequence derived from alignment at tig00000075_pilon:13556..14215+ (Gracilaria gracilis GNS1m male)
atGTCCGCGCCGCTGATGAACGCCACCGCGCGACAGCTCTCTCGCGCCGC
CGCCACGCGCGCCTTTCACACCACGCGCGCCGCTCAAGCCGGCGGCGGAT
ACGACTATCTGCACGCGCAATACATGTACAAGCTGCGCTTCAAACCGGCG
CCCAAGCTGCTCACCGCCGTCTTGATTGGCGGCGGCGTCTCGGCCGGTAT
TGGCATCCCGCTGTTTGCCGTGTGGTTCGGCCAGAAGAAGGCGGGCCTTG
TCTAG
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