Ggra9113.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9113.t1
Unique NameGgra9113.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length392
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:11707..12882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S209_51V6.1
PFAMsSLAC1
Max annot lvl35493|Streptophyta
Evalue1.54e-20
EggNOG OGs28IA4@1|root,2QQKN@2759|Eukaryota,37JZS@33090|Viridiplantae,3G826@35493|Streptophyta
DescriptionS-type anion channel
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9113Ggra9113Gracilaria gracilis GNS1m malegenetig00000075_pilon 11707..12882 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9113.t1.stop1Ggra9113.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 11707..11709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9113.t1.CDS1Ggra9113.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 11707..12882 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9113.t1.exon1Ggra9113.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 11707..12882 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9113.t1.start1Ggra9113.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 12880..12882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9113.t1Ggra9113.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 11707..12882 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9113.t1 ID=Ggra9113.t1|Name=Ggra9113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=392bp
MPSPLGVRARSHYGRIAPWRRWLVQFDMSHNAIALALFAFTSMWHTACEH
FAMLPLPSAIATVLYIISCIMLSCALIILLLRACVFPSAYFADFQHPRLV
NFFFLPVMIGALCVLTTPPSLRSVLQFQIAFYVLSAYQVALTLYLYGEWL
FHAHPTAFIHPLVFMQTIGFFLLANIGASAHLLDQAYAMFSVGCLFWLLV
FITNFQHISPALRKRSENPQPTFFLFIAPPAHAAVSVVLLTLAESARGRA
DSTQLLRARALPWPPLAQAFMYVDLFLYLLMLRLLPTLCSARFAVSWWAY
IFPLSAAAAMTMLRYASEGGLFWGVLSAVLALVATAAMAVVSAFTVWALC
TARVPCNHDALERYYQSYAAELDAAELDAADEAASAPPRST*
back to top

spliced messenger RNA

>Ggra9113.t1 ID=Ggra9113.t1|Name=Ggra9113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000075_pilon:11707..12882- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATCGCCGCTTGGCGTGCGCGCGCGCTCACACTATGGCCGAATCGC
GCCGTGGCGCCGCTGGCTCGTTCAGTTTGACATGTCGCACAATGCCATCG
CGCTCGCCTTGTTCGCCTTCACCTCCATGTGGCACACGGCGTGCGAGCAC
TTTGCCATGCTGCCACTGCCGTCCGCCATCGCCACCGTCTTGTACATCAT
CTCCTGTATCATGCTGTCGTGCGCGCTCATCATCCTGCTGCTGCGCGCCT
GTGTATTCCCCTCCGCCTATTTTGCAGACTTTCAACACCCGCGTCTGGTC
AACTTCTTCTTCCTGCCAGTCATGATCGGCGCGCTGTGCGTGCTCACCAC
CCCGCCCTCCCTGCGCTCCGTGCTGCAGTTCCAGATTGCCTTTTACGTGC
TCTCTGCGTACCAAGTCGCCCTCACGCTCTACCTGTACGGCGAGTGGCTG
TTCCACGCCCACCCCACCGCCTTTATCCACCCGCTGGTCTTCATGCAGAC
CATCGGCTTCTTCCTGCTGGCCAACATTGGCGCCTCCGCCCACCTACTCG
ACCAGGCCTACGCCATGTTCTCCGTGGGCTGTCTCTTCTGGCTGCTGGTC
TTCATCACCAACTTTCAGCACATCTCGCCCGCGCTGCGCAAGCGCAGCGA
GAACCCGCAGCCCACCTTCTTCCTCTTCATCGCGCCGCCGGCGCACGCCG
CCGTGTCCGTGGTGCTGCTCACGCTCGCCGAGTCTGCGCGCGGCCGCGCC
GACAGCACGCAGCTGCTGCGCGCGCGCGCGCTGCCCTGGCCGCCGCTGGC
GCAGGCCTTCATGTACGTGGACCTGTTCCTGTACCTGCTCATGCTCCGGC
TGCTGCCCACGCTGTGCAGCGCGCGCTTTGCCGTGTCGTGGTGGGCGTAC
ATCTTCCCGCTCAGCGCCGCCGCCGCCATGACCATGCTGCGCTACGCGTC
GGAGGGCGGCCTGTTCTGGGGCGTGCTCAGCGCCGTGTTGGCGCTCGTCG
CTACCGCCGCTATGGCCGTCGTGTCTGCCTTCACCGTGTGGGCGCTCTGT
ACGGCGCGCGTGCCGTGCAATCACGACGCGCTCGAGCGCTACTACCAGTC
GTATGCCGCCGAGCTTGACGCCGCCGAGCTTGACGCCGCCGATGAAGCCG
CCAGCGCGCCGCCGCGTTCAACGTGA
back to top

protein sequence of Ggra9113.t1

>Ggra9113.t1 ID=Ggra9113.t1|Name=Ggra9113.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=392bp
MPSPLGVRARSHYGRIAPWRRWLVQFDMSHNAIALALFAFTSMWHTACEH
FAMLPLPSAIATVLYIISCIMLSCALIILLLRACVFPSAYFADFQHPRLV
NFFFLPVMIGALCVLTTPPSLRSVLQFQIAFYVLSAYQVALTLYLYGEWL
FHAHPTAFIHPLVFMQTIGFFLLANIGASAHLLDQAYAMFSVGCLFWLLV
FITNFQHISPALRKRSENPQPTFFLFIAPPAHAAVSVVLLTLAESARGRA
DSTQLLRARALPWPPLAQAFMYVDLFLYLLMLRLLPTLCSARFAVSWWAY
IFPLSAAAAMTMLRYASEGGLFWGVLSAVLALVATAAMAVVSAFTVWALC
TARVPCNHDALERYYQSYAAELDAAELDAADEAASAPPRST*
back to top

mRNA from alignment at tig00000075_pilon:11707..12882-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9113.t1 ID=Ggra9113.t1|Name=Ggra9113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000075_pilon:11707..12882- (Gracilaria gracilis GNS1m male)
ATGCCATCGCCGCTTGGCGTGCGCGCGCGCTCACACTATGGCCGAATCGC
GCCGTGGCGCCGCTGGCTCGTTCAGTTTGACATGTCGCACAATGCCATCG
CGCTCGCCTTGTTCGCCTTCACCTCCATGTGGCACACGGCGTGCGAGCAC
TTTGCCATGCTGCCACTGCCGTCCGCCATCGCCACCGTCTTGTACATCAT
CTCCTGTATCATGCTGTCGTGCGCGCTCATCATCCTGCTGCTGCGCGCCT
GTGTATTCCCCTCCGCCTATTTTGCAGACTTTCAACACCCGCGTCTGGTC
AACTTCTTCTTCCTGCCAGTCATGATCGGCGCGCTGTGCGTGCTCACCAC
CCCGCCCTCCCTGCGCTCCGTGCTGCAGTTCCAGATTGCCTTTTACGTGC
TCTCTGCGTACCAAGTCGCCCTCACGCTCTACCTGTACGGCGAGTGGCTG
TTCCACGCCCACCCCACCGCCTTTATCCACCCGCTGGTCTTCATGCAGAC
CATCGGCTTCTTCCTGCTGGCCAACATTGGCGCCTCCGCCCACCTACTCG
ACCAGGCCTACGCCATGTTCTCCGTGGGCTGTCTCTTCTGGCTGCTGGTC
TTCATCACCAACTTTCAGCACATCTCGCCCGCGCTGCGCAAGCGCAGCGA
GAACCCGCAGCCCACCTTCTTCCTCTTCATCGCGCCGCCGGCGCACGCCG
CCGTGTCCGTGGTGCTGCTCACGCTCGCCGAGTCTGCGCGCGGCCGCGCC
GACAGCACGCAGCTGCTGCGCGCGCGCGCGCTGCCCTGGCCGCCGCTGGC
GCAGGCCTTCATGTACGTGGACCTGTTCCTGTACCTGCTCATGCTCCGGC
TGCTGCCCACGCTGTGCAGCGCGCGCTTTGCCGTGTCGTGGTGGGCGTAC
ATCTTCCCGCTCAGCGCCGCCGCCGCCATGACCATGCTGCGCTACGCGTC
GGAGGGCGGCCTGTTCTGGGGCGTGCTCAGCGCCGTGTTGGCGCTCGTCG
CTACCGCCGCTATGGCCGTCGTGTCTGCCTTCACCGTGTGGGCGCTCTGT
ACGGCGCGCGTGCCGTGCAATCACGACGCGCTCGAGCGCTACTACCAGTC
GTATGCCGCCGAGCTTGACGCCGCCGAGCTTGACGCCGCCGATGAAGCCG
CCAGCGCGCCGCCGCGTTCAACGTGA
back to top

Coding sequence (CDS) from alignment at tig00000075_pilon:11707..12882-

>Ggra9113.t1 ID=Ggra9113.t1|Name=Ggra9113.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1176bp|location=Sequence derived from alignment at tig00000075_pilon:11707..12882- (Gracilaria gracilis GNS1m male)
ATGCCATCGCCGCTTGGCGTGCGCGCGCGCTCACACTATGGCCGAATCGC
GCCGTGGCGCCGCTGGCTCGTTCAGTTTGACATGTCGCACAATGCCATCG
CGCTCGCCTTGTTCGCCTTCACCTCCATGTGGCACACGGCGTGCGAGCAC
TTTGCCATGCTGCCACTGCCGTCCGCCATCGCCACCGTCTTGTACATCAT
CTCCTGTATCATGCTGTCGTGCGCGCTCATCATCCTGCTGCTGCGCGCCT
GTGTATTCCCCTCCGCCTATTTTGCAGACTTTCAACACCCGCGTCTGGTC
AACTTCTTCTTCCTGCCAGTCATGATCGGCGCGCTGTGCGTGCTCACCAC
CCCGCCCTCCCTGCGCTCCGTGCTGCAGTTCCAGATTGCCTTTTACGTGC
TCTCTGCGTACCAAGTCGCCCTCACGCTCTACCTGTACGGCGAGTGGCTG
TTCCACGCCCACCCCACCGCCTTTATCCACCCGCTGGTCTTCATGCAGAC
CATCGGCTTCTTCCTGCTGGCCAACATTGGCGCCTCCGCCCACCTACTCG
ACCAGGCCTACGCCATGTTCTCCGTGGGCTGTCTCTTCTGGCTGCTGGTC
TTCATCACCAACTTTCAGCACATCTCGCCCGCGCTGCGCAAGCGCAGCGA
GAACCCGCAGCCCACCTTCTTCCTCTTCATCGCGCCGCCGGCGCACGCCG
CCGTGTCCGTGGTGCTGCTCACGCTCGCCGAGTCTGCGCGCGGCCGCGCC
GACAGCACGCAGCTGCTGCGCGCGCGCGCGCTGCCCTGGCCGCCGCTGGC
GCAGGCCTTCATGTACGTGGACCTGTTCCTGTACCTGCTCATGCTCCGGC
TGCTGCCCACGCTGTGCAGCGCGCGCTTTGCCGTGTCGTGGTGGGCGTAC
ATCTTCCCGCTCAGCGCCGCCGCCGCCATGACCATGCTGCGCTACGCGTC
GGAGGGCGGCCTGTTCTGGGGCGTGCTCAGCGCCGTGTTGGCGCTCGTCG
CTACCGCCGCTATGGCCGTCGTGTCTGCCTTCACCGTGTGGGCGCTCTGT
ACGGCGCGCGTGCCGTGCAATCACGACGCGCTCGAGCGCTACTACCAGTC
GTATGCCGCCGAGCTTGACGCCGCCGAGCTTGACGCCGCCGATGAAGCCG
CCAGCGCGCCGCCGCGTTCAACGTGA
back to top