Ggra9110.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9110.t1
Unique NameGgra9110.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:227520..228402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1415780.JPOG01000001_gene1476
PFAMsUDG
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K10800
KEGG Pathwayko03410,map03410
Evalue5.4e-84
EggNOG OGsCOG1573@1|root,COG1573@2|Bacteria,1PIX8@1224|Proteobacteria,1S0RN@1236|Gammaproteobacteria
DescriptionPFAM Uracil-DNA glycosylase superfamily
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9110Ggra9110Gracilaria gracilis GNS1m malegenetig00000176_pilon 227520..228402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9110.t1Ggra9110.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 227520..228402 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9110.t1.stop1Ggra9110.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 227520..227522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9110.t1.CDS1Ggra9110.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 227520..228150 -
Ggra9110.t1.CDS2Ggra9110.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000176_pilon 228230..228402 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9110.t1.exon1Ggra9110.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 227520..228150 -
Ggra9110.t1.exon2Ggra9110.t1.exon2Gracilaria gracilis GNS1m maleexontig00000176_pilon 228230..228402 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9110.t1.intron1Ggra9110.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000176_pilon 228151..228229 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9110.t1.start1Ggra9110.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 228400..228402 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9110.t1 ID=Ggra9110.t1|Name=Ggra9110.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=268bp
MAMPEKPRSAKRKRGADIASRILEAEKDMSDELSKLSFAKPVTHVYNPLE
YAWDAHEWYVRKFGNSKKKVLLVGMNPGPWGMAQTGVPFGEVTAVREFLK
MPNDISINRPQLENAKRPVSGFSCTRSEVSGKRLWREWAQIEYGDAPTFF
ETFFVHNYCPLMFMESGGRNRTPVQLKAVERKTIMEACDIALRKVAEVLE
VQAVCGIGGFAEKRCKIALEGTGLTVHCVLHPSPASPAANRGWAPQAKKQ
ISEMLQVLESGTSQREN*
back to top

spliced messenger RNA

>Ggra9110.t1 ID=Ggra9110.t1|Name=Ggra9110.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000176_pilon:227520..228402- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAATGCCCGAGAAGCCTCGCTCTGCGAAGCGAAAGAGAGGTGCAGA
TATTGCATCGCGAATTTTGGAAGCAGAGAAAGATATGAGCGATGAGCTAT
CGAAGCTATCTTTTGCAAAACCCGTAACACATGTCTATAATCCTCTTGAA
TACGCGTGGGACGCTCATGAATGGTATGTACGGAAATTTGGGAACTCAAA
GAAGAAAGTGCTACTGGTTGGGATGAATCCCGGTCCATGGGGCATGGCTC
AAACAGGAGTTCCGTTTGGTGAAGTAACTGCTGTCCGCGAATTTCTAAAG
ATGCCAAATGACATAAGCATAAATCGCCCACAGCTCGAGAACGCCAAAAG
GCCCGTGTCTGGCTTTTCGTGTACTAGAAGTGAGGTTTCAGGAAAAAGAT
TGTGGAGGGAATGGGCCCAGATTGAGTACGGTGATGCTCCGACCTTCTTC
GAAACTTTTTTTGTTCACAACTACTGTCCGCTGATGTTTATGGAGAGTGG
GGGTCGCAATCGCACACCCGTTCAGTTGAAGGCAGTAGAGCGGAAAACGA
TTATGGAAGCATGTGATATTGCCTTAAGAAAAGTTGCGGAGGTTCTTGAA
GTACAGGCCGTGTGTGGGATTGGAGGATTTGCGGAAAAACGATGCAAAAT
TGCGCTGGAAGGAACAGGATTAACCGTGCATTGTGTATTGCATCCCAGTC
CAGCATCCCCGGCAGCAAATCGAGGATGGGCACCCCAAGCCAAGAAGCAG
ATTAGCGAAATGCTACAAGTTCTTGAGTCCGGTACATCGCAACGGGAGAA
CTAG
back to top

protein sequence of Ggra9110.t1

>Ggra9110.t1 ID=Ggra9110.t1|Name=Ggra9110.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=268bp
MAMPEKPRSAKRKRGADIASRILEAEKDMSDELSKLSFAKPVTHVYNPLE
YAWDAHEWYVRKFGNSKKKVLLVGMNPGPWGMAQTGVPFGEVTAVREFLK
MPNDISINRPQLENAKRPVSGFSCTRSEVSGKRLWREWAQIEYGDAPTFF
ETFFVHNYCPLMFMESGGRNRTPVQLKAVERKTIMEACDIALRKVAEVLE
VQAVCGIGGFAEKRCKIALEGTGLTVHCVLHPSPASPAANRGWAPQAKKQ
ISEMLQVLESGTSQREN*
back to top

mRNA from alignment at tig00000176_pilon:227520..228402-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9110.t1 ID=Ggra9110.t1|Name=Ggra9110.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=883bp|location=Sequence derived from alignment at tig00000176_pilon:227520..228402- (Gracilaria gracilis GNS1m male)
ATGGCAATGCCCGAGAAGCCTCGCTCTGCGAAGCGAAAGAGAGGTGCAGA
TATTGCATCGCGAATTTTGGAAGCAGAGAAAGATATGAGCGATGAGCTAT
CGAAGCTATCTTTTGCAAAACCCGTAACACATGTCTATAATCCTCTTGAA
TACGCGTGGGACGCTCATGAATGGTATGTTCAATCTCTACGTGTCTAGGC
AACTTTTCCGACTGCGTGATGTTCTAACTGTCTAAATCTGTATAATGAGC
AGGTATGTACGGAAATTTGGGAACTCAAAGAAGAAAGTGCTACTGGTTGG
GATGAATCCCGGTCCATGGGGCATGGCTCAAACAGGAGTTCCGTTTGGTG
AAGTAACTGCTGTCCGCGAATTTCTAAAGATGCCAAATGACATAAGCATA
AATCGCCCACAGCTCGAGAACGCCAAAAGGCCCGTGTCTGGCTTTTCGTG
TACTAGAAGTGAGGTTTCAGGAAAAAGATTGTGGAGGGAATGGGCCCAGA
TTGAGTACGGTGATGCTCCGACCTTCTTCGAAACTTTTTTTGTTCACAAC
TACTGTCCGCTGATGTTTATGGAGAGTGGGGGTCGCAATCGCACACCCGT
TCAGTTGAAGGCAGTAGAGCGGAAAACGATTATGGAAGCATGTGATATTG
CCTTAAGAAAAGTTGCGGAGGTTCTTGAAGTACAGGCCGTGTGTGGGATT
GGAGGATTTGCGGAAAAACGATGCAAAATTGCGCTGGAAGGAACAGGATT
AACCGTGCATTGTGTATTGCATCCCAGTCCAGCATCCCCGGCAGCAAATC
GAGGATGGGCACCCCAAGCCAAGAAGCAGATTAGCGAAATGCTACAAGTT
CTTGAGTCCGGTACATCGCAACGGGAGAACTAG
back to top

Coding sequence (CDS) from alignment at tig00000176_pilon:227520..228402-

>Ggra9110.t1 ID=Ggra9110.t1|Name=Ggra9110.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00000176_pilon:227520..228402- (Gracilaria gracilis GNS1m male)
ATGGCAATGCCCGAGAAGCCTCGCTCTGCGAAGCGAAAGAGAGGTGCAGA
TATTGCATCGCGAATTTTGGAAGCAGAGAAAGATATGAGCGATGAGCTAT
CGAAGCTATCTTTTGCAAAACCCGTAACACATGTCTATAATCCTCTTGAA
TACGCGTGGGACGCTCATGAATGGTATGTACGGAAATTTGGGAACTCAAA
GAAGAAAGTGCTACTGGTTGGGATGAATCCCGGTCCATGGGGCATGGCTC
AAACAGGAGTTCCGTTTGGTGAAGTAACTGCTGTCCGCGAATTTCTAAAG
ATGCCAAATGACATAAGCATAAATCGCCCACAGCTCGAGAACGCCAAAAG
GCCCGTGTCTGGCTTTTCGTGTACTAGAAGTGAGGTTTCAGGAAAAAGAT
TGTGGAGGGAATGGGCCCAGATTGAGTACGGTGATGCTCCGACCTTCTTC
GAAACTTTTTTTGTTCACAACTACTGTCCGCTGATGTTTATGGAGAGTGG
GGGTCGCAATCGCACACCCGTTCAGTTGAAGGCAGTAGAGCGGAAAACGA
TTATGGAAGCATGTGATATTGCCTTAAGAAAAGTTGCGGAGGTTCTTGAA
GTACAGGCCGTGTGTGGGATTGGAGGATTTGCGGAAAAACGATGCAAAAT
TGCGCTGGAAGGAACAGGATTAACCGTGCATTGTGTATTGCATCCCAGTC
CAGCATCCCCGGCAGCAAATCGAGGATGGGCACCCCAAGCCAAGAAGCAG
ATTAGCGAAATGCTACAAGTTCTTGAGTCCGGTACATCGCAACGGGAGAA
CTAG
back to top