Ggra9109.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9109.t1
Unique Name	Ggra9109.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	513

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000176_pilon	contig	tig00000176_pilon:224126..225664 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5786.XP_003287868.1
PFAMs	Cellulase
Max annot lvl	554915\|Amoebozoa
KEGG ko	ko:K01179
KEGG Reaction	R06200,R11307,R11308
KEGG Pathway	ko00500,ko01100,map00500,map01100
Evalue	3.85e-68
EggNOG OGs	COG2730@1\|root,2RSQT@2759\|Eukaryota,3XD21@554915\|Amoebozoa
EC	3.2.1.4
Description	Cellulase (glycosyl hydrolase family 5)
COG category	G
CAZy	GH5,GH9
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9109	Ggra9109	Gracilaria gracilis GNS1m male	gene	tig00000176_pilon 224126..225664 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9109.t1.stop1	Ggra9109.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000176_pilon 224126..224128 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9109.t1.CDS1	Ggra9109.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000176_pilon 224126..225664 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9109.t1.exon1	Ggra9109.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000176_pilon 224126..225664 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9109.t1.start1	Ggra9109.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000176_pilon 225662..225664 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9109.t1	Ggra9109.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000176_pilon 224126..225664 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000176_pilon:224126..225664-
coding sequence from alignment at tig00000176_pilon:224126..225664-

mRNA sequence

>Ggra9109.t1 ID=Ggra9109.t1|Name=Ggra9109.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=513bp
MSHQYTRIRQDEDDEAISPLQTRHHRRRARGVMDTTQRADSDFIPPSVAP
AAPDYIPPDYSNGDVRVPLPREQELATKRLRFSTDTWGTKSSAAGSQALY
AKKTSRVACITRWAIGILLALVVLIGIGLVFKRDSFYTATLRKRGIPPGL
YSKNGYLYVGKDTPFRIKGFSWYGLEEPTHVPGGITFVSASDVFDFADRH
EFNAIRIPLAVDNIMSNMHPAGGITPFKNPEISGLPYLDMVLQIVRMAAD
HDILILLDMHRLDSHEVQSKGIWYSDAVPEERLMHVWEKICEIFKDEWNV
MGADLFNEPWDALWNSTKEKKDWKGASEKLGNLVHEKCPSWLLLVEGVGN
RAGGTETWPFWAENLAAMENSPPAPVLRNKVALSPHVYGPGVWMQDYFKA
SDFADHMPKVWDDHFGQASEKTGLATVIGEWGGVYVDKDKTWQQKFMDYV
LEKEMGFFYWCLNPESADTGGLLKSDWVSEETEKLKLISRAPSTSVKDNA
IHFKYWRTWRTS*

spliced messenger RNA

>Ggra9109.t1 ID=Ggra9109.t1|Name=Ggra9109.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1539bp|location=Sequence derived from alignment at tig00000176_pilon:224126..225664- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCACCAGTATACAAGAATCCGGCAGGATGAAGATGATGAGGCGAT
TTCGCCTTTACAAACTCGACACCATCGAAGGCGGGCGAGAGGGGTGATGG
ACACTACCCAAAGAGCGGACTCTGATTTCATCCCCCCTTCTGTTGCACCG
GCTGCTCCAGACTACATCCCTCCCGACTATAGCAATGGTGATGTTCGGGT
TCCTCTTCCGCGCGAACAGGAATTGGCCACAAAGCGCCTTCGATTTTCTA
CAGACACATGGGGGACAAAGAGCTCAGCAGCCGGCTCGCAAGCTTTGTAT
GCGAAGAAGACTAGTCGCGTTGCATGTATCACCAGGTGGGCGATAGGTAT
CTTGCTGGCCTTAGTTGTCCTCATTGGGATCGGCCTTGTATTCAAAAGAG
ACAGCTTCTACACGGCGACACTTAGAAAACGGGGAATTCCTCCTGGTCTG
TATTCCAAAAATGGTTACCTTTATGTTGGTAAGGATACGCCATTTAGGAT
CAAAGGTTTCTCATGGTATGGACTCGAAGAACCTACCCACGTTCCTGGAG
GTATTACCTTTGTGTCCGCATCAGATGTATTCGACTTTGCAGATAGACAT
GAATTCAACGCCATCCGCATACCCTTGGCTGTGGATAATATCATGTCCAA
TATGCATCCTGCCGGGGGAATTACTCCATTTAAGAATCCTGAGATCTCCG
GTCTTCCATACTTGGACATGGTCTTACAAATTGTGCGGATGGCAGCGGAT
CATGACATTCTCATCTTGCTTGATATGCATCGACTTGATTCGCATGAGGT
GCAATCAAAAGGCATATGGTACTCGGATGCCGTGCCAGAAGAGCGACTGA
TGCACGTATGGGAAAAGATATGTGAGATTTTCAAAGACGAATGGAATGTC
ATGGGAGCAGATCTGTTCAATGAACCATGGGATGCTCTTTGGAATTCTAC
AAAAGAAAAGAAAGATTGGAAGGGGGCATCGGAAAAACTAGGGAATCTTG
TTCACGAAAAGTGTCCGAGTTGGCTTCTTCTTGTTGAGGGTGTGGGAAAT
CGTGCGGGAGGTACGGAAACCTGGCCATTTTGGGCGGAAAACTTGGCAGC
AATGGAGAACTCCCCACCTGCCCCAGTGTTGCGAAACAAAGTTGCCCTCA
GCCCTCATGTCTACGGCCCCGGAGTATGGATGCAGGACTACTTTAAAGCA
TCGGACTTTGCCGACCATATGCCAAAAGTATGGGACGATCATTTTGGCCA
AGCTTCCGAAAAGACAGGCCTAGCCACCGTAATCGGGGAGTGGGGTGGGG
TATATGTAGACAAAGACAAAACATGGCAGCAGAAATTCATGGATTACGTC
CTTGAGAAAGAGATGGGTTTCTTCTATTGGTGCCTCAATCCTGAAAGTGC
GGATACGGGGGGCTTGCTTAAGAGCGATTGGGTATCCGAAGAGACCGAAA
AACTGAAGCTAATAAGCCGAGCTCCTTCAACAAGTGTGAAGGATAATGCA
ATCCATTTCAAGTATTGGCGAACATGGCGGACGAGCTGA

protein sequence of Ggra9109.t1

>Ggra9109.t1 ID=Ggra9109.t1|Name=Ggra9109.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=513bp
MSHQYTRIRQDEDDEAISPLQTRHHRRRARGVMDTTQRADSDFIPPSVAP
AAPDYIPPDYSNGDVRVPLPREQELATKRLRFSTDTWGTKSSAAGSQALY
AKKTSRVACITRWAIGILLALVVLIGIGLVFKRDSFYTATLRKRGIPPGL
YSKNGYLYVGKDTPFRIKGFSWYGLEEPTHVPGGITFVSASDVFDFADRH
EFNAIRIPLAVDNIMSNMHPAGGITPFKNPEISGLPYLDMVLQIVRMAAD
HDILILLDMHRLDSHEVQSKGIWYSDAVPEERLMHVWEKICEIFKDEWNV
MGADLFNEPWDALWNSTKEKKDWKGASEKLGNLVHEKCPSWLLLVEGVGN
RAGGTETWPFWAENLAAMENSPPAPVLRNKVALSPHVYGPGVWMQDYFKA
SDFADHMPKVWDDHFGQASEKTGLATVIGEWGGVYVDKDKTWQQKFMDYV
LEKEMGFFYWCLNPESADTGGLLKSDWVSEETEKLKLISRAPSTSVKDNA
IHFKYWRTWRTS*

mRNA from alignment at tig00000176_pilon:224126..225664-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9109.t1 ID=Ggra9109.t1|Name=Ggra9109.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1539bp|location=Sequence derived from alignment at tig00000176_pilon:224126..225664- (Gracilaria gracilis GNS1m male)
ATGTCGCACCAGTATACAAGAATCCGGCAGGATGAAGATGATGAGGCGAT
TTCGCCTTTACAAACTCGACACCATCGAAGGCGGGCGAGAGGGGTGATGG
ACACTACCCAAAGAGCGGACTCTGATTTCATCCCCCCTTCTGTTGCACCG
GCTGCTCCAGACTACATCCCTCCCGACTATAGCAATGGTGATGTTCGGGT
TCCTCTTCCGCGCGAACAGGAATTGGCCACAAAGCGCCTTCGATTTTCTA
CAGACACATGGGGGACAAAGAGCTCAGCAGCCGGCTCGCAAGCTTTGTAT
GCGAAGAAGACTAGTCGCGTTGCATGTATCACCAGGTGGGCGATAGGTAT
CTTGCTGGCCTTAGTTGTCCTCATTGGGATCGGCCTTGTATTCAAAAGAG
ACAGCTTCTACACGGCGACACTTAGAAAACGGGGAATTCCTCCTGGTCTG
TATTCCAAAAATGGTTACCTTTATGTTGGTAAGGATACGCCATTTAGGAT
CAAAGGTTTCTCATGGTATGGACTCGAAGAACCTACCCACGTTCCTGGAG
GTATTACCTTTGTGTCCGCATCAGATGTATTCGACTTTGCAGATAGACAT
GAATTCAACGCCATCCGCATACCCTTGGCTGTGGATAATATCATGTCCAA
TATGCATCCTGCCGGGGGAATTACTCCATTTAAGAATCCTGAGATCTCCG
GTCTTCCATACTTGGACATGGTCTTACAAATTGTGCGGATGGCAGCGGAT
CATGACATTCTCATCTTGCTTGATATGCATCGACTTGATTCGCATGAGGT
GCAATCAAAAGGCATATGGTACTCGGATGCCGTGCCAGAAGAGCGACTGA
TGCACGTATGGGAAAAGATATGTGAGATTTTCAAAGACGAATGGAATGTC
ATGGGAGCAGATCTGTTCAATGAACCATGGGATGCTCTTTGGAATTCTAC
AAAAGAAAAGAAAGATTGGAAGGGGGCATCGGAAAAACTAGGGAATCTTG
TTCACGAAAAGTGTCCGAGTTGGCTTCTTCTTGTTGAGGGTGTGGGAAAT
CGTGCGGGAGGTACGGAAACCTGGCCATTTTGGGCGGAAAACTTGGCAGC
AATGGAGAACTCCCCACCTGCCCCAGTGTTGCGAAACAAAGTTGCCCTCA
GCCCTCATGTCTACGGCCCCGGAGTATGGATGCAGGACTACTTTAAAGCA
TCGGACTTTGCCGACCATATGCCAAAAGTATGGGACGATCATTTTGGCCA
AGCTTCCGAAAAGACAGGCCTAGCCACCGTAATCGGGGAGTGGGGTGGGG
TATATGTAGACAAAGACAAAACATGGCAGCAGAAATTCATGGATTACGTC
CTTGAGAAAGAGATGGGTTTCTTCTATTGGTGCCTCAATCCTGAAAGTGC
GGATACGGGGGGCTTGCTTAAGAGCGATTGGGTATCCGAAGAGACCGAAA
AACTGAAGCTAATAAGCCGAGCTCCTTCAACAAGTGTGAAGGATAATGCA
ATCCATTTCAAGTATTGGCGAACATGGCGGACGAGCTGA

Coding sequence (CDS) from alignment at tig00000176_pilon:224126..225664-

>Ggra9109.t1 ID=Ggra9109.t1|Name=Ggra9109.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1539bp|location=Sequence derived from alignment at tig00000176_pilon:224126..225664- (Gracilaria gracilis GNS1m male)
ATGTCGCACCAGTATACAAGAATCCGGCAGGATGAAGATGATGAGGCGAT
TTCGCCTTTACAAACTCGACACCATCGAAGGCGGGCGAGAGGGGTGATGG
ACACTACCCAAAGAGCGGACTCTGATTTCATCCCCCCTTCTGTTGCACCG
GCTGCTCCAGACTACATCCCTCCCGACTATAGCAATGGTGATGTTCGGGT
TCCTCTTCCGCGCGAACAGGAATTGGCCACAAAGCGCCTTCGATTTTCTA
CAGACACATGGGGGACAAAGAGCTCAGCAGCCGGCTCGCAAGCTTTGTAT
GCGAAGAAGACTAGTCGCGTTGCATGTATCACCAGGTGGGCGATAGGTAT
CTTGCTGGCCTTAGTTGTCCTCATTGGGATCGGCCTTGTATTCAAAAGAG
ACAGCTTCTACACGGCGACACTTAGAAAACGGGGAATTCCTCCTGGTCTG
TATTCCAAAAATGGTTACCTTTATGTTGGTAAGGATACGCCATTTAGGAT
CAAAGGTTTCTCATGGTATGGACTCGAAGAACCTACCCACGTTCCTGGAG
GTATTACCTTTGTGTCCGCATCAGATGTATTCGACTTTGCAGATAGACAT
GAATTCAACGCCATCCGCATACCCTTGGCTGTGGATAATATCATGTCCAA
TATGCATCCTGCCGGGGGAATTACTCCATTTAAGAATCCTGAGATCTCCG
GTCTTCCATACTTGGACATGGTCTTACAAATTGTGCGGATGGCAGCGGAT
CATGACATTCTCATCTTGCTTGATATGCATCGACTTGATTCGCATGAGGT
GCAATCAAAAGGCATATGGTACTCGGATGCCGTGCCAGAAGAGCGACTGA
TGCACGTATGGGAAAAGATATGTGAGATTTTCAAAGACGAATGGAATGTC
ATGGGAGCAGATCTGTTCAATGAACCATGGGATGCTCTTTGGAATTCTAC
AAAAGAAAAGAAAGATTGGAAGGGGGCATCGGAAAAACTAGGGAATCTTG
TTCACGAAAAGTGTCCGAGTTGGCTTCTTCTTGTTGAGGGTGTGGGAAAT
CGTGCGGGAGGTACGGAAACCTGGCCATTTTGGGCGGAAAACTTGGCAGC
AATGGAGAACTCCCCACCTGCCCCAGTGTTGCGAAACAAAGTTGCCCTCA
GCCCTCATGTCTACGGCCCCGGAGTATGGATGCAGGACTACTTTAAAGCA
TCGGACTTTGCCGACCATATGCCAAAAGTATGGGACGATCATTTTGGCCA
AGCTTCCGAAAAGACAGGCCTAGCCACCGTAATCGGGGAGTGGGGTGGGG
TATATGTAGACAAAGACAAAACATGGCAGCAGAAATTCATGGATTACGTC
CTTGAGAAAGAGATGGGTTTCTTCTATTGGTGCCTCAATCCTGAAAGTGC
GGATACGGGGGGCTTGCTTAAGAGCGATTGGGTATCCGAAGAGACCGAAA
AACTGAAGCTAATAAGCCGAGCTCCTTCAACAAGTGTGAAGGATAATGCA
ATCCATTTCAAGTATTGGCGAACATGGCGGACGAGCTGA