Ggra9109.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9109.t1
Unique NameGgra9109.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length513
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:224126..225664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003287868.1
PFAMsCellulase
Max annot lvl554915|Amoebozoa
KEGG koko:K01179
KEGG ReactionR06200,R11307,R11308
KEGG Pathwayko00500,ko01100,map00500,map01100
Evalue3.85e-68
EggNOG OGsCOG2730@1|root,2RSQT@2759|Eukaryota,3XD21@554915|Amoebozoa
EC3.2.1.4
DescriptionCellulase (glycosyl hydrolase family 5)
COG categoryG
CAZyGH5,GH9
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9109Ggra9109Gracilaria gracilis GNS1m malegenetig00000176_pilon 224126..225664 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9109.t1.stop1Ggra9109.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 224126..224128 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9109.t1.CDS1Ggra9109.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 224126..225664 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9109.t1.exon1Ggra9109.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 224126..225664 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9109.t1.start1Ggra9109.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 225662..225664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9109.t1Ggra9109.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 224126..225664 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9109.t1 ID=Ggra9109.t1|Name=Ggra9109.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=513bp
MSHQYTRIRQDEDDEAISPLQTRHHRRRARGVMDTTQRADSDFIPPSVAP
AAPDYIPPDYSNGDVRVPLPREQELATKRLRFSTDTWGTKSSAAGSQALY
AKKTSRVACITRWAIGILLALVVLIGIGLVFKRDSFYTATLRKRGIPPGL
YSKNGYLYVGKDTPFRIKGFSWYGLEEPTHVPGGITFVSASDVFDFADRH
EFNAIRIPLAVDNIMSNMHPAGGITPFKNPEISGLPYLDMVLQIVRMAAD
HDILILLDMHRLDSHEVQSKGIWYSDAVPEERLMHVWEKICEIFKDEWNV
MGADLFNEPWDALWNSTKEKKDWKGASEKLGNLVHEKCPSWLLLVEGVGN
RAGGTETWPFWAENLAAMENSPPAPVLRNKVALSPHVYGPGVWMQDYFKA
SDFADHMPKVWDDHFGQASEKTGLATVIGEWGGVYVDKDKTWQQKFMDYV
LEKEMGFFYWCLNPESADTGGLLKSDWVSEETEKLKLISRAPSTSVKDNA
IHFKYWRTWRTS*
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spliced messenger RNA

>Ggra9109.t1 ID=Ggra9109.t1|Name=Ggra9109.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1539bp|location=Sequence derived from alignment at tig00000176_pilon:224126..225664- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCACCAGTATACAAGAATCCGGCAGGATGAAGATGATGAGGCGAT
TTCGCCTTTACAAACTCGACACCATCGAAGGCGGGCGAGAGGGGTGATGG
ACACTACCCAAAGAGCGGACTCTGATTTCATCCCCCCTTCTGTTGCACCG
GCTGCTCCAGACTACATCCCTCCCGACTATAGCAATGGTGATGTTCGGGT
TCCTCTTCCGCGCGAACAGGAATTGGCCACAAAGCGCCTTCGATTTTCTA
CAGACACATGGGGGACAAAGAGCTCAGCAGCCGGCTCGCAAGCTTTGTAT
GCGAAGAAGACTAGTCGCGTTGCATGTATCACCAGGTGGGCGATAGGTAT
CTTGCTGGCCTTAGTTGTCCTCATTGGGATCGGCCTTGTATTCAAAAGAG
ACAGCTTCTACACGGCGACACTTAGAAAACGGGGAATTCCTCCTGGTCTG
TATTCCAAAAATGGTTACCTTTATGTTGGTAAGGATACGCCATTTAGGAT
CAAAGGTTTCTCATGGTATGGACTCGAAGAACCTACCCACGTTCCTGGAG
GTATTACCTTTGTGTCCGCATCAGATGTATTCGACTTTGCAGATAGACAT
GAATTCAACGCCATCCGCATACCCTTGGCTGTGGATAATATCATGTCCAA
TATGCATCCTGCCGGGGGAATTACTCCATTTAAGAATCCTGAGATCTCCG
GTCTTCCATACTTGGACATGGTCTTACAAATTGTGCGGATGGCAGCGGAT
CATGACATTCTCATCTTGCTTGATATGCATCGACTTGATTCGCATGAGGT
GCAATCAAAAGGCATATGGTACTCGGATGCCGTGCCAGAAGAGCGACTGA
TGCACGTATGGGAAAAGATATGTGAGATTTTCAAAGACGAATGGAATGTC
ATGGGAGCAGATCTGTTCAATGAACCATGGGATGCTCTTTGGAATTCTAC
AAAAGAAAAGAAAGATTGGAAGGGGGCATCGGAAAAACTAGGGAATCTTG
TTCACGAAAAGTGTCCGAGTTGGCTTCTTCTTGTTGAGGGTGTGGGAAAT
CGTGCGGGAGGTACGGAAACCTGGCCATTTTGGGCGGAAAACTTGGCAGC
AATGGAGAACTCCCCACCTGCCCCAGTGTTGCGAAACAAAGTTGCCCTCA
GCCCTCATGTCTACGGCCCCGGAGTATGGATGCAGGACTACTTTAAAGCA
TCGGACTTTGCCGACCATATGCCAAAAGTATGGGACGATCATTTTGGCCA
AGCTTCCGAAAAGACAGGCCTAGCCACCGTAATCGGGGAGTGGGGTGGGG
TATATGTAGACAAAGACAAAACATGGCAGCAGAAATTCATGGATTACGTC
CTTGAGAAAGAGATGGGTTTCTTCTATTGGTGCCTCAATCCTGAAAGTGC
GGATACGGGGGGCTTGCTTAAGAGCGATTGGGTATCCGAAGAGACCGAAA
AACTGAAGCTAATAAGCCGAGCTCCTTCAACAAGTGTGAAGGATAATGCA
ATCCATTTCAAGTATTGGCGAACATGGCGGACGAGCTGA
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protein sequence of Ggra9109.t1

>Ggra9109.t1 ID=Ggra9109.t1|Name=Ggra9109.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=513bp
MSHQYTRIRQDEDDEAISPLQTRHHRRRARGVMDTTQRADSDFIPPSVAP
AAPDYIPPDYSNGDVRVPLPREQELATKRLRFSTDTWGTKSSAAGSQALY
AKKTSRVACITRWAIGILLALVVLIGIGLVFKRDSFYTATLRKRGIPPGL
YSKNGYLYVGKDTPFRIKGFSWYGLEEPTHVPGGITFVSASDVFDFADRH
EFNAIRIPLAVDNIMSNMHPAGGITPFKNPEISGLPYLDMVLQIVRMAAD
HDILILLDMHRLDSHEVQSKGIWYSDAVPEERLMHVWEKICEIFKDEWNV
MGADLFNEPWDALWNSTKEKKDWKGASEKLGNLVHEKCPSWLLLVEGVGN
RAGGTETWPFWAENLAAMENSPPAPVLRNKVALSPHVYGPGVWMQDYFKA
SDFADHMPKVWDDHFGQASEKTGLATVIGEWGGVYVDKDKTWQQKFMDYV
LEKEMGFFYWCLNPESADTGGLLKSDWVSEETEKLKLISRAPSTSVKDNA
IHFKYWRTWRTS*
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mRNA from alignment at tig00000176_pilon:224126..225664-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9109.t1 ID=Ggra9109.t1|Name=Ggra9109.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1539bp|location=Sequence derived from alignment at tig00000176_pilon:224126..225664- (Gracilaria gracilis GNS1m male)
ATGTCGCACCAGTATACAAGAATCCGGCAGGATGAAGATGATGAGGCGAT
TTCGCCTTTACAAACTCGACACCATCGAAGGCGGGCGAGAGGGGTGATGG
ACACTACCCAAAGAGCGGACTCTGATTTCATCCCCCCTTCTGTTGCACCG
GCTGCTCCAGACTACATCCCTCCCGACTATAGCAATGGTGATGTTCGGGT
TCCTCTTCCGCGCGAACAGGAATTGGCCACAAAGCGCCTTCGATTTTCTA
CAGACACATGGGGGACAAAGAGCTCAGCAGCCGGCTCGCAAGCTTTGTAT
GCGAAGAAGACTAGTCGCGTTGCATGTATCACCAGGTGGGCGATAGGTAT
CTTGCTGGCCTTAGTTGTCCTCATTGGGATCGGCCTTGTATTCAAAAGAG
ACAGCTTCTACACGGCGACACTTAGAAAACGGGGAATTCCTCCTGGTCTG
TATTCCAAAAATGGTTACCTTTATGTTGGTAAGGATACGCCATTTAGGAT
CAAAGGTTTCTCATGGTATGGACTCGAAGAACCTACCCACGTTCCTGGAG
GTATTACCTTTGTGTCCGCATCAGATGTATTCGACTTTGCAGATAGACAT
GAATTCAACGCCATCCGCATACCCTTGGCTGTGGATAATATCATGTCCAA
TATGCATCCTGCCGGGGGAATTACTCCATTTAAGAATCCTGAGATCTCCG
GTCTTCCATACTTGGACATGGTCTTACAAATTGTGCGGATGGCAGCGGAT
CATGACATTCTCATCTTGCTTGATATGCATCGACTTGATTCGCATGAGGT
GCAATCAAAAGGCATATGGTACTCGGATGCCGTGCCAGAAGAGCGACTGA
TGCACGTATGGGAAAAGATATGTGAGATTTTCAAAGACGAATGGAATGTC
ATGGGAGCAGATCTGTTCAATGAACCATGGGATGCTCTTTGGAATTCTAC
AAAAGAAAAGAAAGATTGGAAGGGGGCATCGGAAAAACTAGGGAATCTTG
TTCACGAAAAGTGTCCGAGTTGGCTTCTTCTTGTTGAGGGTGTGGGAAAT
CGTGCGGGAGGTACGGAAACCTGGCCATTTTGGGCGGAAAACTTGGCAGC
AATGGAGAACTCCCCACCTGCCCCAGTGTTGCGAAACAAAGTTGCCCTCA
GCCCTCATGTCTACGGCCCCGGAGTATGGATGCAGGACTACTTTAAAGCA
TCGGACTTTGCCGACCATATGCCAAAAGTATGGGACGATCATTTTGGCCA
AGCTTCCGAAAAGACAGGCCTAGCCACCGTAATCGGGGAGTGGGGTGGGG
TATATGTAGACAAAGACAAAACATGGCAGCAGAAATTCATGGATTACGTC
CTTGAGAAAGAGATGGGTTTCTTCTATTGGTGCCTCAATCCTGAAAGTGC
GGATACGGGGGGCTTGCTTAAGAGCGATTGGGTATCCGAAGAGACCGAAA
AACTGAAGCTAATAAGCCGAGCTCCTTCAACAAGTGTGAAGGATAATGCA
ATCCATTTCAAGTATTGGCGAACATGGCGGACGAGCTGA
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Coding sequence (CDS) from alignment at tig00000176_pilon:224126..225664-

>Ggra9109.t1 ID=Ggra9109.t1|Name=Ggra9109.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1539bp|location=Sequence derived from alignment at tig00000176_pilon:224126..225664- (Gracilaria gracilis GNS1m male)
ATGTCGCACCAGTATACAAGAATCCGGCAGGATGAAGATGATGAGGCGAT
TTCGCCTTTACAAACTCGACACCATCGAAGGCGGGCGAGAGGGGTGATGG
ACACTACCCAAAGAGCGGACTCTGATTTCATCCCCCCTTCTGTTGCACCG
GCTGCTCCAGACTACATCCCTCCCGACTATAGCAATGGTGATGTTCGGGT
TCCTCTTCCGCGCGAACAGGAATTGGCCACAAAGCGCCTTCGATTTTCTA
CAGACACATGGGGGACAAAGAGCTCAGCAGCCGGCTCGCAAGCTTTGTAT
GCGAAGAAGACTAGTCGCGTTGCATGTATCACCAGGTGGGCGATAGGTAT
CTTGCTGGCCTTAGTTGTCCTCATTGGGATCGGCCTTGTATTCAAAAGAG
ACAGCTTCTACACGGCGACACTTAGAAAACGGGGAATTCCTCCTGGTCTG
TATTCCAAAAATGGTTACCTTTATGTTGGTAAGGATACGCCATTTAGGAT
CAAAGGTTTCTCATGGTATGGACTCGAAGAACCTACCCACGTTCCTGGAG
GTATTACCTTTGTGTCCGCATCAGATGTATTCGACTTTGCAGATAGACAT
GAATTCAACGCCATCCGCATACCCTTGGCTGTGGATAATATCATGTCCAA
TATGCATCCTGCCGGGGGAATTACTCCATTTAAGAATCCTGAGATCTCCG
GTCTTCCATACTTGGACATGGTCTTACAAATTGTGCGGATGGCAGCGGAT
CATGACATTCTCATCTTGCTTGATATGCATCGACTTGATTCGCATGAGGT
GCAATCAAAAGGCATATGGTACTCGGATGCCGTGCCAGAAGAGCGACTGA
TGCACGTATGGGAAAAGATATGTGAGATTTTCAAAGACGAATGGAATGTC
ATGGGAGCAGATCTGTTCAATGAACCATGGGATGCTCTTTGGAATTCTAC
AAAAGAAAAGAAAGATTGGAAGGGGGCATCGGAAAAACTAGGGAATCTTG
TTCACGAAAAGTGTCCGAGTTGGCTTCTTCTTGTTGAGGGTGTGGGAAAT
CGTGCGGGAGGTACGGAAACCTGGCCATTTTGGGCGGAAAACTTGGCAGC
AATGGAGAACTCCCCACCTGCCCCAGTGTTGCGAAACAAAGTTGCCCTCA
GCCCTCATGTCTACGGCCCCGGAGTATGGATGCAGGACTACTTTAAAGCA
TCGGACTTTGCCGACCATATGCCAAAAGTATGGGACGATCATTTTGGCCA
AGCTTCCGAAAAGACAGGCCTAGCCACCGTAATCGGGGAGTGGGGTGGGG
TATATGTAGACAAAGACAAAACATGGCAGCAGAAATTCATGGATTACGTC
CTTGAGAAAGAGATGGGTTTCTTCTATTGGTGCCTCAATCCTGAAAGTGC
GGATACGGGGGGCTTGCTTAAGAGCGATTGGGTATCCGAAGAGACCGAAA
AACTGAAGCTAATAAGCCGAGCTCCTTCAACAAGTGTGAAGGATAATGCA
ATCCATTTCAAGTATTGGCGAACATGGCGGACGAGCTGA
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