Ggra9108.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9108.t1
Unique NameGgra9108.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length494
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:222485..223966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7070.TC013868-PA
Preferred nameAAAS
PFAMsANAPC4_WD40,PD40,WD40
Max annot lvl33208|Metazoa
KEGG koko:K14320
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0000003,GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007610,GO:0007611,GO:0007612,GO:0008104,GO:0008150,GO:0008152,GO:0009566,GO:0010467,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0015931,GO:0016020,GO:0016032,GO:0019953,GO:0022414,GO:0031090,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032501,GO:0032879,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0046822,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050877,GO:0050890,GO:0051028,GO:0051049,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0060341,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705
Evalue3.93e-24
EggNOG OGsKOG2139@1|root,KOG2139@2759|Eukaryota,38G4A@33154|Opisthokonta,3BJFY@33208|Metazoa,3CU8Z@33213|Bilateria,41USK@6656|Arthropoda,3SFVF@50557|Insecta
Descriptionnuclear transport
COG categoryS
BRITEko00000,ko00001,ko00002,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9108Ggra9108Gracilaria gracilis GNS1m malegenetig00000176_pilon 222485..223966 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9108.t1.start1Ggra9108.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 222485..222487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9108.t1.CDS1Ggra9108.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 222485..223966 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9108.t1.exon1Ggra9108.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 222485..223966 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9108.t1.stop1Ggra9108.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 223964..223966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9108.t1Ggra9108.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 222485..223966 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9108.t1 ID=Ggra9108.t1|Name=Ggra9108.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=494bp
MVAEPHLANAFAIVGLIPEDHGFRTVAEYRGRLLTVPPRIQRRPQQEEDG
DAIAPADEATTSAPDTFDSSRNGFLEVGDTVSEVDDVLRDLGRQIDVAGM
SCYQPRLFIVIRLVPPMYLADTPRAVVVQATPSEEDTPLKRLQNLFNYYW
TGPTSNTEVQMSLLTWHWATDLLAVATGPHLDRICALNFATSTWEATGER
ASQLNGTRCIAFRPYAGRSLAIGCDAGVILMEGHSMVRLCEGSHRQVLSL
DWSPDGTKLAASSRENSSVRVWDVATRISTYVGRGSIAKFSPGGPETYLF
VASPNTPDFRLWSCDTWKNERWGSLSGPVVAATWSKDGSTLLFSTQGESA
IHVMKVRQSNGSETRVVHSEVTTLPSEGPGGTPILMEIDPTGERLAVAYD
VPFQRRTEADTSLDFMAEDPHKRFAVALYATQLSPTFLMRPIGYITGPCG
SGPPVALKFKAHMGGGQGAVLSCLWKNGSLCFTQLAFNASRRK*
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spliced messenger RNA

>Ggra9108.t1 ID=Ggra9108.t1|Name=Ggra9108.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000176_pilon:222485..223966+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCCGAACCCCATCTTGCAAACGCATTCGCAATCGTTGGTCTCAT
TCCTGAAGATCACGGTTTCAGAACAGTAGCTGAGTATCGCGGCCGTCTTT
TAACAGTGCCACCACGGATTCAGCGGCGGCCGCAGCAAGAAGAAGATGGT
GACGCAATCGCTCCCGCAGATGAAGCAACCACATCAGCACCGGACACTTT
CGATTCATCTCGTAATGGCTTTTTAGAGGTTGGCGACACTGTCAGTGAAG
TTGATGACGTGCTTAGAGATCTTGGAAGGCAGATTGATGTCGCTGGTATG
TCATGCTATCAACCCCGCCTCTTCATCGTTATTCGACTAGTACCACCAAT
GTATTTGGCCGACACTCCGAGGGCTGTTGTCGTGCAAGCCACCCCTTCGG
AAGAAGACACACCTCTCAAGCGATTACAAAACCTGTTCAACTATTACTGG
ACTGGACCAACATCGAATACTGAGGTTCAAATGTCGTTGCTGACATGGCA
CTGGGCCACTGATCTCTTAGCTGTTGCTACTGGACCTCATCTCGATCGCA
TATGTGCTCTCAACTTTGCTACTTCTACTTGGGAGGCCACAGGAGAAAGG
GCTTCGCAGCTCAATGGAACCCGATGCATAGCGTTCCGGCCATACGCGGG
ACGTTCTCTTGCAATCGGTTGTGATGCCGGTGTCATTCTTATGGAAGGTC
ATAGTATGGTTCGACTTTGTGAAGGATCGCACCGCCAGGTGCTTTCGCTT
GACTGGTCCCCAGACGGGACTAAACTCGCAGCTTCTTCAAGAGAGAATAG
CTCCGTGCGTGTATGGGACGTTGCCACGCGAATATCTACGTATGTTGGCC
GTGGTTCTATCGCAAAGTTTAGCCCAGGTGGACCTGAAACCTATCTATTT
GTTGCTAGCCCAAACACTCCCGACTTCCGTCTATGGTCATGTGACACATG
GAAGAACGAAAGGTGGGGGAGTCTTTCAGGACCTGTAGTTGCTGCTACAT
GGTCCAAAGATGGAAGTACTCTACTGTTCTCTACCCAAGGGGAGAGTGCG
ATTCATGTGATGAAGGTTAGGCAAAGTAATGGATCCGAAACAAGGGTAGT
TCATTCCGAAGTAACCACACTGCCAAGCGAAGGCCCTGGAGGTACTCCGA
TTCTCATGGAAATTGACCCCACTGGTGAACGTCTTGCTGTTGCTTACGAC
GTACCCTTCCAACGACGTACTGAGGCAGATACGTCGCTCGACTTCATGGC
GGAAGATCCACACAAGAGGTTTGCGGTGGCATTGTACGCTACTCAGCTGT
CCCCGACTTTCTTGATGCGGCCAATTGGATACATTACCGGACCTTGCGGT
AGCGGGCCACCTGTTGCCCTGAAGTTCAAAGCGCACATGGGGGGAGGTCA
AGGTGCCGTTTTGTCGTGCCTTTGGAAGAACGGGAGCTTGTGTTTCACGC
AATTAGCATTTAACGCTTCTCGACGGAAGTAA
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protein sequence of Ggra9108.t1

>Ggra9108.t1 ID=Ggra9108.t1|Name=Ggra9108.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=494bp
MVAEPHLANAFAIVGLIPEDHGFRTVAEYRGRLLTVPPRIQRRPQQEEDG
DAIAPADEATTSAPDTFDSSRNGFLEVGDTVSEVDDVLRDLGRQIDVAGM
SCYQPRLFIVIRLVPPMYLADTPRAVVVQATPSEEDTPLKRLQNLFNYYW
TGPTSNTEVQMSLLTWHWATDLLAVATGPHLDRICALNFATSTWEATGER
ASQLNGTRCIAFRPYAGRSLAIGCDAGVILMEGHSMVRLCEGSHRQVLSL
DWSPDGTKLAASSRENSSVRVWDVATRISTYVGRGSIAKFSPGGPETYLF
VASPNTPDFRLWSCDTWKNERWGSLSGPVVAATWSKDGSTLLFSTQGESA
IHVMKVRQSNGSETRVVHSEVTTLPSEGPGGTPILMEIDPTGERLAVAYD
VPFQRRTEADTSLDFMAEDPHKRFAVALYATQLSPTFLMRPIGYITGPCG
SGPPVALKFKAHMGGGQGAVLSCLWKNGSLCFTQLAFNASRRK*
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mRNA from alignment at tig00000176_pilon:222485..223966+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9108.t1 ID=Ggra9108.t1|Name=Ggra9108.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000176_pilon:222485..223966+ (Gracilaria gracilis GNS1m male)
ATGGTTGCCGAACCCCATCTTGCAAACGCATTCGCAATCGTTGGTCTCAT
TCCTGAAGATCACGGTTTCAGAACAGTAGCTGAGTATCGCGGCCGTCTTT
TAACAGTGCCACCACGGATTCAGCGGCGGCCGCAGCAAGAAGAAGATGGT
GACGCAATCGCTCCCGCAGATGAAGCAACCACATCAGCACCGGACACTTT
CGATTCATCTCGTAATGGCTTTTTAGAGGTTGGCGACACTGTCAGTGAAG
TTGATGACGTGCTTAGAGATCTTGGAAGGCAGATTGATGTCGCTGGTATG
TCATGCTATCAACCCCGCCTCTTCATCGTTATTCGACTAGTACCACCAAT
GTATTTGGCCGACACTCCGAGGGCTGTTGTCGTGCAAGCCACCCCTTCGG
AAGAAGACACACCTCTCAAGCGATTACAAAACCTGTTCAACTATTACTGG
ACTGGACCAACATCGAATACTGAGGTTCAAATGTCGTTGCTGACATGGCA
CTGGGCCACTGATCTCTTAGCTGTTGCTACTGGACCTCATCTCGATCGCA
TATGTGCTCTCAACTTTGCTACTTCTACTTGGGAGGCCACAGGAGAAAGG
GCTTCGCAGCTCAATGGAACCCGATGCATAGCGTTCCGGCCATACGCGGG
ACGTTCTCTTGCAATCGGTTGTGATGCCGGTGTCATTCTTATGGAAGGTC
ATAGTATGGTTCGACTTTGTGAAGGATCGCACCGCCAGGTGCTTTCGCTT
GACTGGTCCCCAGACGGGACTAAACTCGCAGCTTCTTCAAGAGAGAATAG
CTCCGTGCGTGTATGGGACGTTGCCACGCGAATATCTACGTATGTTGGCC
GTGGTTCTATCGCAAAGTTTAGCCCAGGTGGACCTGAAACCTATCTATTT
GTTGCTAGCCCAAACACTCCCGACTTCCGTCTATGGTCATGTGACACATG
GAAGAACGAAAGGTGGGGGAGTCTTTCAGGACCTGTAGTTGCTGCTACAT
GGTCCAAAGATGGAAGTACTCTACTGTTCTCTACCCAAGGGGAGAGTGCG
ATTCATGTGATGAAGGTTAGGCAAAGTAATGGATCCGAAACAAGGGTAGT
TCATTCCGAAGTAACCACACTGCCAAGCGAAGGCCCTGGAGGTACTCCGA
TTCTCATGGAAATTGACCCCACTGGTGAACGTCTTGCTGTTGCTTACGAC
GTACCCTTCCAACGACGTACTGAGGCAGATACGTCGCTCGACTTCATGGC
GGAAGATCCACACAAGAGGTTTGCGGTGGCATTGTACGCTACTCAGCTGT
CCCCGACTTTCTTGATGCGGCCAATTGGATACATTACCGGACCTTGCGGT
AGCGGGCCACCTGTTGCCCTGAAGTTCAAAGCGCACATGGGGGGAGGTCA
AGGTGCCGTTTTGTCGTGCCTTTGGAAGAACGGGAGCTTGTGTTTCACGC
AATTAGCATTTAACGCTTCTCGACGGAAGTAA
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Coding sequence (CDS) from alignment at tig00000176_pilon:222485..223966+

>Ggra9108.t1 ID=Ggra9108.t1|Name=Ggra9108.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1482bp|location=Sequence derived from alignment at tig00000176_pilon:222485..223966+ (Gracilaria gracilis GNS1m male)
ATGGTTGCCGAACCCCATCTTGCAAACGCATTCGCAATCGTTGGTCTCAT
TCCTGAAGATCACGGTTTCAGAACAGTAGCTGAGTATCGCGGCCGTCTTT
TAACAGTGCCACCACGGATTCAGCGGCGGCCGCAGCAAGAAGAAGATGGT
GACGCAATCGCTCCCGCAGATGAAGCAACCACATCAGCACCGGACACTTT
CGATTCATCTCGTAATGGCTTTTTAGAGGTTGGCGACACTGTCAGTGAAG
TTGATGACGTGCTTAGAGATCTTGGAAGGCAGATTGATGTCGCTGGTATG
TCATGCTATCAACCCCGCCTCTTCATCGTTATTCGACTAGTACCACCAAT
GTATTTGGCCGACACTCCGAGGGCTGTTGTCGTGCAAGCCACCCCTTCGG
AAGAAGACACACCTCTCAAGCGATTACAAAACCTGTTCAACTATTACTGG
ACTGGACCAACATCGAATACTGAGGTTCAAATGTCGTTGCTGACATGGCA
CTGGGCCACTGATCTCTTAGCTGTTGCTACTGGACCTCATCTCGATCGCA
TATGTGCTCTCAACTTTGCTACTTCTACTTGGGAGGCCACAGGAGAAAGG
GCTTCGCAGCTCAATGGAACCCGATGCATAGCGTTCCGGCCATACGCGGG
ACGTTCTCTTGCAATCGGTTGTGATGCCGGTGTCATTCTTATGGAAGGTC
ATAGTATGGTTCGACTTTGTGAAGGATCGCACCGCCAGGTGCTTTCGCTT
GACTGGTCCCCAGACGGGACTAAACTCGCAGCTTCTTCAAGAGAGAATAG
CTCCGTGCGTGTATGGGACGTTGCCACGCGAATATCTACGTATGTTGGCC
GTGGTTCTATCGCAAAGTTTAGCCCAGGTGGACCTGAAACCTATCTATTT
GTTGCTAGCCCAAACACTCCCGACTTCCGTCTATGGTCATGTGACACATG
GAAGAACGAAAGGTGGGGGAGTCTTTCAGGACCTGTAGTTGCTGCTACAT
GGTCCAAAGATGGAAGTACTCTACTGTTCTCTACCCAAGGGGAGAGTGCG
ATTCATGTGATGAAGGTTAGGCAAAGTAATGGATCCGAAACAAGGGTAGT
TCATTCCGAAGTAACCACACTGCCAAGCGAAGGCCCTGGAGGTACTCCGA
TTCTCATGGAAATTGACCCCACTGGTGAACGTCTTGCTGTTGCTTACGAC
GTACCCTTCCAACGACGTACTGAGGCAGATACGTCGCTCGACTTCATGGC
GGAAGATCCACACAAGAGGTTTGCGGTGGCATTGTACGCTACTCAGCTGT
CCCCGACTTTCTTGATGCGGCCAATTGGATACATTACCGGACCTTGCGGT
AGCGGGCCACCTGTTGCCCTGAAGTTCAAAGCGCACATGGGGGGAGGTCA
AGGTGCCGTTTTGTCGTGCCTTTGGAAGAACGGGAGCTTGTGTTTCACGC
AATTAGCATTTAACGCTTCTCGACGGAAGTAA
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