Ggra9107.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9107.t1
Unique Name	Ggra9107.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	264

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000176_pilon	contig	tig00000176_pilon:219682..220473 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708242.1
Max annot lvl	2759\|Eukaryota
Evalue	2.88e-56
EggNOG OGs	28RT2@1\|root,2QYGC@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9107	Ggra9107	Gracilaria gracilis GNS1m male	gene	tig00000176_pilon 219682..220473 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9107.t1.start1	Ggra9107.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000176_pilon 219682..219684 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9107.t1.CDS1	Ggra9107.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000176_pilon 219682..220473 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9107.t1.exon1	Ggra9107.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000176_pilon 219682..220473 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9107.t1.stop1	Ggra9107.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000176_pilon 220471..220473 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9107.t1	Ggra9107.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000176_pilon 219682..220473 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000176_pilon:219682..220473+
coding sequence from alignment at tig00000176_pilon:219682..220473+

mRNA sequence

>Ggra9107.t1 ID=Ggra9107.t1|Name=Ggra9107.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=264bp
MCQQSVLHDTPLPPTPFDPASLHHDDLPLHPPSTCRRQEAQRDHSTAHHS
LTDHSSTHSSRHSLLQKTLTIYDWDDTFFPSTFLAARGVRLDDTYSLPEP
LQQQMAELEAIVIKIVQEAMQYGIVKVITNAEQGWVELSGKCFMPRLTKF
LQHNSIKVVSARSIYEADYPDSPASWKTAAFVSEVSDSFPNTDCLNVLVL
GDSLSEREAAHNLATRMPASCVKSVKLVERPNVTQLQRQIALLHGSFRDL
RDHYGSFDVNLTC*

spliced messenger RNA

>Ggra9107.t1 ID=Ggra9107.t1|Name=Ggra9107.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000176_pilon:219682..220473+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTCAGCAATCCGTGCTTCACGACACTCCATTACCCCCTACACCCTT
CGACCCGGCCTCGTTACATCACGACGACCTTCCGCTTCATCCCCCCTCCA
CATGTCGACGCCAAGAGGCACAACGCGACCATTCCACCGCACACCACTCA
CTCACAGACCACTCGTCGACACACTCCAGTCGTCATTCGCTTCTTCAAAA
AACGCTCACTATTTACGACTGGGACGACACCTTTTTCCCCTCCACCTTTC
TGGCAGCCCGCGGAGTGCGCTTAGATGACACCTATTCCCTTCCCGAACCT
CTACAACAACAAATGGCCGAGCTTGAGGCCATCGTTATTAAAATCGTCCA
GGAAGCCATGCAGTACGGTATAGTGAAAGTCATTACCAATGCCGAGCAAG
GGTGGGTAGAACTTTCCGGCAAATGCTTTATGCCGCGTCTTACAAAATTC
CTTCAACACAACTCCATAAAGGTTGTCTCCGCCCGCTCCATATACGAGGC
TGATTACCCCGACTCGCCCGCAAGTTGGAAGACTGCCGCCTTCGTGTCGG
AGGTCAGCGATTCCTTTCCCAACACCGACTGTCTTAACGTGTTGGTCTTA
GGAGATTCGCTCAGCGAACGGGAGGCTGCGCATAATCTTGCCACTCGTAT
GCCCGCGTCGTGTGTCAAGAGTGTTAAGCTTGTTGAAAGGCCAAACGTCA
CACAGTTGCAACGACAGATTGCATTGCTTCATGGATCCTTCCGTGATCTG
CGTGATCATTATGGTTCCTTCGACGTTAACCTAACATGTTGA

protein sequence of Ggra9107.t1

>Ggra9107.t1 ID=Ggra9107.t1|Name=Ggra9107.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=264bp
MCQQSVLHDTPLPPTPFDPASLHHDDLPLHPPSTCRRQEAQRDHSTAHHS
LTDHSSTHSSRHSLLQKTLTIYDWDDTFFPSTFLAARGVRLDDTYSLPEP
LQQQMAELEAIVIKIVQEAMQYGIVKVITNAEQGWVELSGKCFMPRLTKF
LQHNSIKVVSARSIYEADYPDSPASWKTAAFVSEVSDSFPNTDCLNVLVL
GDSLSEREAAHNLATRMPASCVKSVKLVERPNVTQLQRQIALLHGSFRDL
RDHYGSFDVNLTC*

mRNA from alignment at tig00000176_pilon:219682..220473+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9107.t1 ID=Ggra9107.t1|Name=Ggra9107.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000176_pilon:219682..220473+ (Gracilaria gracilis GNS1m male)
ATGTGTCAGCAATCCGTGCTTCACGACACTCCATTACCCCCTACACCCTT
CGACCCGGCCTCGTTACATCACGACGACCTTCCGCTTCATCCCCCCTCCA
CATGTCGACGCCAAGAGGCACAACGCGACCATTCCACCGCACACCACTCA
CTCACAGACCACTCGTCGACACACTCCAGTCGTCATTCGCTTCTTCAAAA
AACGCTCACTATTTACGACTGGGACGACACCTTTTTCCCCTCCACCTTTC
TGGCAGCCCGCGGAGTGCGCTTAGATGACACCTATTCCCTTCCCGAACCT
CTACAACAACAAATGGCCGAGCTTGAGGCCATCGTTATTAAAATCGTCCA
GGAAGCCATGCAGTACGGTATAGTGAAAGTCATTACCAATGCCGAGCAAG
GGTGGGTAGAACTTTCCGGCAAATGCTTTATGCCGCGTCTTACAAAATTC
CTTCAACACAACTCCATAAAGGTTGTCTCCGCCCGCTCCATATACGAGGC
TGATTACCCCGACTCGCCCGCAAGTTGGAAGACTGCCGCCTTCGTGTCGG
AGGTCAGCGATTCCTTTCCCAACACCGACTGTCTTAACGTGTTGGTCTTA
GGAGATTCGCTCAGCGAACGGGAGGCTGCGCATAATCTTGCCACTCGTAT
GCCCGCGTCGTGTGTCAAGAGTGTTAAGCTTGTTGAAAGGCCAAACGTCA
CACAGTTGCAACGACAGATTGCATTGCTTCATGGATCCTTCCGTGATCTG
CGTGATCATTATGGTTCCTTCGACGTTAACCTAACATGTTGA

Coding sequence (CDS) from alignment at tig00000176_pilon:219682..220473+

>Ggra9107.t1 ID=Ggra9107.t1|Name=Ggra9107.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=792bp|location=Sequence derived from alignment at tig00000176_pilon:219682..220473+ (Gracilaria gracilis GNS1m male)
ATGTGTCAGCAATCCGTGCTTCACGACACTCCATTACCCCCTACACCCTT
CGACCCGGCCTCGTTACATCACGACGACCTTCCGCTTCATCCCCCCTCCA
CATGTCGACGCCAAGAGGCACAACGCGACCATTCCACCGCACACCACTCA
CTCACAGACCACTCGTCGACACACTCCAGTCGTCATTCGCTTCTTCAAAA
AACGCTCACTATTTACGACTGGGACGACACCTTTTTCCCCTCCACCTTTC
TGGCAGCCCGCGGAGTGCGCTTAGATGACACCTATTCCCTTCCCGAACCT
CTACAACAACAAATGGCCGAGCTTGAGGCCATCGTTATTAAAATCGTCCA
GGAAGCCATGCAGTACGGTATAGTGAAAGTCATTACCAATGCCGAGCAAG
GGTGGGTAGAACTTTCCGGCAAATGCTTTATGCCGCGTCTTACAAAATTC
CTTCAACACAACTCCATAAAGGTTGTCTCCGCCCGCTCCATATACGAGGC
TGATTACCCCGACTCGCCCGCAAGTTGGAAGACTGCCGCCTTCGTGTCGG
AGGTCAGCGATTCCTTTCCCAACACCGACTGTCTTAACGTGTTGGTCTTA
GGAGATTCGCTCAGCGAACGGGAGGCTGCGCATAATCTTGCCACTCGTAT
GCCCGCGTCGTGTGTCAAGAGTGTTAAGCTTGTTGAAAGGCCAAACGTCA
CACAGTTGCAACGACAGATTGCATTGCTTCATGGATCCTTCCGTGATCTG
CGTGATCATTATGGTTCCTTCGACGTTAACCTAACATGTTGA