Ggra9101.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9101.t1
Unique Name	Ggra9101.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	422

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000176_pilon	contig	tig00000176_pilon:194157..195422 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LM92
PFAMs	CBM_1,LPMO_10
Max annot lvl	2759\|Eukaryota
Evalue	2.05e-23
EggNOG OGs	2CZUJ@1\|root,2SBQR@2759\|Eukaryota
Description	Fungal-type cellulose-binding domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9101	Ggra9101	Gracilaria gracilis GNS1m male	gene	tig00000176_pilon 194157..195422 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9101.t1.start1	Ggra9101.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000176_pilon 194157..194159 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9101.t1.CDS1	Ggra9101.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000176_pilon 194157..195422 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9101.t1.exon1	Ggra9101.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000176_pilon 194157..195422 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9101.t1.stop1	Ggra9101.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000176_pilon 195420..195422 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9101.t1	Ggra9101.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000176_pilon 194157..195422 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000176_pilon:194157..195422+
coding sequence from alignment at tig00000176_pilon:194157..195422+

mRNA sequence

>Ggra9101.t1 ID=Ggra9101.t1|Name=Ggra9101.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=422bp
MLLSYFVLAIVVIALLISVVHSHGMMCNPRQRGAYHSIKCGNDLDIDNVV
TDHCAHCLNGGTVATVKAHLPPAGWSVFEPTKDFFGTANRAGLCGDPMGR
VDHMIGGDFMPYPNVPIVAHWQKGGQVDFSAEIDTNHNGYFEFFICNLDA
CGKPDIDASCFVNNNCVKLNRVAHPSCENPSGATIHECGPIDDAYPGRWY
LPCRKTGHVGVHIVGGDSGTMRYQLPADFECKHCVVQWYWATANSCAPRG
FKEYIENYNFPFGTTCDSDGGGRGTYRADMSECGGSSLPEEFWSCADVQI
TADGTSAGAVQALSNPVPDPAAVANDEVEVKENPQGVLEMASQGLENDIT
MAANEDSGKRKEEEMMAASGDCMLEDQPCDGGKECCDIQQFCVKTDKAGG
FTCRFWWSLWEDSELRSKAAE*

spliced messenger RNA

>Ggra9101.t1 ID=Ggra9101.t1|Name=Ggra9101.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1266bp|location=Sequence derived from alignment at tig00000176_pilon:194157..195422+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTCTCTTATTTTGTGCTCGCAATCGTCGTCATTGCCTTGTTGAT
TTCCGTCGTCCATTCTCATGGTATGATGTGCAACCCGCGCCAACGCGGCG
CATACCATTCCATCAAATGCGGCAATGATCTCGATATTGACAACGTCGTC
ACCGACCACTGCGCCCATTGCCTCAATGGAGGAACTGTTGCCACCGTCAA
GGCCCATCTCCCCCCCGCCGGCTGGAGTGTCTTCGAGCCCACCAAGGACT
TCTTCGGCACCGCCAATCGAGCCGGTCTCTGTGGAGATCCCATGGGGCGC
GTGGATCATATGATTGGTGGTGACTTCATGCCCTACCCCAACGTACCCAT
CGTCGCGCACTGGCAAAAGGGTGGTCAGGTCGACTTTTCAGCCGAGATTG
ACACCAATCACAATGGCTACTTTGAATTCTTTATCTGCAACCTAGACGCT
TGCGGTAAGCCTGACATCGACGCTAGCTGCTTTGTGAACAACAACTGCGT
CAAGCTCAACCGAGTGGCACACCCGTCTTGCGAGAATCCGTCGGGCGCTA
CCATCCACGAATGTGGACCAATCGATGACGCGTACCCCGGCCGTTGGTAC
CTACCATGCCGCAAAACTGGTCATGTGGGCGTTCATATTGTCGGTGGAGA
CTCTGGCACCATGCGCTATCAGCTTCCAGCTGACTTTGAATGTAAGCATT
GCGTCGTGCAGTGGTATTGGGCCACAGCCAACTCGTGTGCGCCTCGAGGC
TTCAAGGAGTACATCGAGAATTACAACTTCCCGTTCGGAACCACTTGTGA
TTCCGACGGCGGCGGCAGAGGAACTTACCGCGCCGATATGTCTGAGTGCG
GTGGTTCATCCTTGCCAGAGGAGTTTTGGTCATGTGCTGACGTCCAGATT
ACCGCAGATGGCACCAGTGCTGGTGCAGTGCAGGCGCTCAGCAACCCGGT
GCCAGACCCAGCTGCTGTGGCGAATGATGAGGTTGAGGTGAAAGAAAACC
CACAAGGAGTGCTCGAAATGGCCTCGCAGGGCTTGGAGAACGATATCACT
ATGGCTGCCAACGAGGACTCCGGTAAGCGCAAGGAGGAGGAGATGATGGC
TGCCTCAGGTGATTGTATGCTTGAAGATCAACCGTGCGATGGCGGCAAGG
AGTGTTGCGACATACAGCAATTCTGCGTGAAGACCGACAAAGCCGGAGGC
TTCACATGTCGCTTCTGGTGGAGTCTTTGGGAGGACTCCGAATTACGATC
AAAGGCTGCCGAGTGA

protein sequence of Ggra9101.t1

>Ggra9101.t1 ID=Ggra9101.t1|Name=Ggra9101.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=422bp
MLLSYFVLAIVVIALLISVVHSHGMMCNPRQRGAYHSIKCGNDLDIDNVV
TDHCAHCLNGGTVATVKAHLPPAGWSVFEPTKDFFGTANRAGLCGDPMGR
VDHMIGGDFMPYPNVPIVAHWQKGGQVDFSAEIDTNHNGYFEFFICNLDA
CGKPDIDASCFVNNNCVKLNRVAHPSCENPSGATIHECGPIDDAYPGRWY
LPCRKTGHVGVHIVGGDSGTMRYQLPADFECKHCVVQWYWATANSCAPRG
FKEYIENYNFPFGTTCDSDGGGRGTYRADMSECGGSSLPEEFWSCADVQI
TADGTSAGAVQALSNPVPDPAAVANDEVEVKENPQGVLEMASQGLENDIT
MAANEDSGKRKEEEMMAASGDCMLEDQPCDGGKECCDIQQFCVKTDKAGG
FTCRFWWSLWEDSELRSKAAE*

mRNA from alignment at tig00000176_pilon:194157..195422+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9101.t1 ID=Ggra9101.t1|Name=Ggra9101.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1266bp|location=Sequence derived from alignment at tig00000176_pilon:194157..195422+ (Gracilaria gracilis GNS1m male)
ATGCTGCTCTCTTATTTTGTGCTCGCAATCGTCGTCATTGCCTTGTTGAT
TTCCGTCGTCCATTCTCATGGTATGATGTGCAACCCGCGCCAACGCGGCG
CATACCATTCCATCAAATGCGGCAATGATCTCGATATTGACAACGTCGTC
ACCGACCACTGCGCCCATTGCCTCAATGGAGGAACTGTTGCCACCGTCAA
GGCCCATCTCCCCCCCGCCGGCTGGAGTGTCTTCGAGCCCACCAAGGACT
TCTTCGGCACCGCCAATCGAGCCGGTCTCTGTGGAGATCCCATGGGGCGC
GTGGATCATATGATTGGTGGTGACTTCATGCCCTACCCCAACGTACCCAT
CGTCGCGCACTGGCAAAAGGGTGGTCAGGTCGACTTTTCAGCCGAGATTG
ACACCAATCACAATGGCTACTTTGAATTCTTTATCTGCAACCTAGACGCT
TGCGGTAAGCCTGACATCGACGCTAGCTGCTTTGTGAACAACAACTGCGT
CAAGCTCAACCGAGTGGCACACCCGTCTTGCGAGAATCCGTCGGGCGCTA
CCATCCACGAATGTGGACCAATCGATGACGCGTACCCCGGCCGTTGGTAC
CTACCATGCCGCAAAACTGGTCATGTGGGCGTTCATATTGTCGGTGGAGA
CTCTGGCACCATGCGCTATCAGCTTCCAGCTGACTTTGAATGTAAGCATT
GCGTCGTGCAGTGGTATTGGGCCACAGCCAACTCGTGTGCGCCTCGAGGC
TTCAAGGAGTACATCGAGAATTACAACTTCCCGTTCGGAACCACTTGTGA
TTCCGACGGCGGCGGCAGAGGAACTTACCGCGCCGATATGTCTGAGTGCG
GTGGTTCATCCTTGCCAGAGGAGTTTTGGTCATGTGCTGACGTCCAGATT
ACCGCAGATGGCACCAGTGCTGGTGCAGTGCAGGCGCTCAGCAACCCGGT
GCCAGACCCAGCTGCTGTGGCGAATGATGAGGTTGAGGTGAAAGAAAACC
CACAAGGAGTGCTCGAAATGGCCTCGCAGGGCTTGGAGAACGATATCACT
ATGGCTGCCAACGAGGACTCCGGTAAGCGCAAGGAGGAGGAGATGATGGC
TGCCTCAGGTGATTGTATGCTTGAAGATCAACCGTGCGATGGCGGCAAGG
AGTGTTGCGACATACAGCAATTCTGCGTGAAGACCGACAAAGCCGGAGGC
TTCACATGTCGCTTCTGGTGGAGTCTTTGGGAGGACTCCGAATTACGATC
AAAGGCTGCCGAGTGA

Coding sequence (CDS) from alignment at tig00000176_pilon:194157..195422+

>Ggra9101.t1 ID=Ggra9101.t1|Name=Ggra9101.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1266bp|location=Sequence derived from alignment at tig00000176_pilon:194157..195422+ (Gracilaria gracilis GNS1m male)
ATGCTGCTCTCTTATTTTGTGCTCGCAATCGTCGTCATTGCCTTGTTGAT
TTCCGTCGTCCATTCTCATGGTATGATGTGCAACCCGCGCCAACGCGGCG
CATACCATTCCATCAAATGCGGCAATGATCTCGATATTGACAACGTCGTC
ACCGACCACTGCGCCCATTGCCTCAATGGAGGAACTGTTGCCACCGTCAA
GGCCCATCTCCCCCCCGCCGGCTGGAGTGTCTTCGAGCCCACCAAGGACT
TCTTCGGCACCGCCAATCGAGCCGGTCTCTGTGGAGATCCCATGGGGCGC
GTGGATCATATGATTGGTGGTGACTTCATGCCCTACCCCAACGTACCCAT
CGTCGCGCACTGGCAAAAGGGTGGTCAGGTCGACTTTTCAGCCGAGATTG
ACACCAATCACAATGGCTACTTTGAATTCTTTATCTGCAACCTAGACGCT
TGCGGTAAGCCTGACATCGACGCTAGCTGCTTTGTGAACAACAACTGCGT
CAAGCTCAACCGAGTGGCACACCCGTCTTGCGAGAATCCGTCGGGCGCTA
CCATCCACGAATGTGGACCAATCGATGACGCGTACCCCGGCCGTTGGTAC
CTACCATGCCGCAAAACTGGTCATGTGGGCGTTCATATTGTCGGTGGAGA
CTCTGGCACCATGCGCTATCAGCTTCCAGCTGACTTTGAATGTAAGCATT
GCGTCGTGCAGTGGTATTGGGCCACAGCCAACTCGTGTGCGCCTCGAGGC
TTCAAGGAGTACATCGAGAATTACAACTTCCCGTTCGGAACCACTTGTGA
TTCCGACGGCGGCGGCAGAGGAACTTACCGCGCCGATATGTCTGAGTGCG
GTGGTTCATCCTTGCCAGAGGAGTTTTGGTCATGTGCTGACGTCCAGATT
ACCGCAGATGGCACCAGTGCTGGTGCAGTGCAGGCGCTCAGCAACCCGGT
GCCAGACCCAGCTGCTGTGGCGAATGATGAGGTTGAGGTGAAAGAAAACC
CACAAGGAGTGCTCGAAATGGCCTCGCAGGGCTTGGAGAACGATATCACT
ATGGCTGCCAACGAGGACTCCGGTAAGCGCAAGGAGGAGGAGATGATGGC
TGCCTCAGGTGATTGTATGCTTGAAGATCAACCGTGCGATGGCGGCAAGG
AGTGTTGCGACATACAGCAATTCTGCGTGAAGACCGACAAAGCCGGAGGC
TTCACATGTCGCTTCTGGTGGAGTCTTTGGGAGGACTCCGAATTACGATC
AAAGGCTGCCGAGTGA