Ggra9101.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9101.t1
Unique NameGgra9101.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length422
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:194157..195422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LM92
PFAMsCBM_1,LPMO_10
Max annot lvl2759|Eukaryota
Evalue2.05e-23
EggNOG OGs2CZUJ@1|root,2SBQR@2759|Eukaryota
DescriptionFungal-type cellulose-binding domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9101Ggra9101Gracilaria gracilis GNS1m malegenetig00000176_pilon 194157..195422 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9101.t1.start1Ggra9101.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 194157..194159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9101.t1.CDS1Ggra9101.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 194157..195422 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9101.t1.exon1Ggra9101.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 194157..195422 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9101.t1.stop1Ggra9101.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 195420..195422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9101.t1Ggra9101.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 194157..195422 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9101.t1 ID=Ggra9101.t1|Name=Ggra9101.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=422bp
MLLSYFVLAIVVIALLISVVHSHGMMCNPRQRGAYHSIKCGNDLDIDNVV
TDHCAHCLNGGTVATVKAHLPPAGWSVFEPTKDFFGTANRAGLCGDPMGR
VDHMIGGDFMPYPNVPIVAHWQKGGQVDFSAEIDTNHNGYFEFFICNLDA
CGKPDIDASCFVNNNCVKLNRVAHPSCENPSGATIHECGPIDDAYPGRWY
LPCRKTGHVGVHIVGGDSGTMRYQLPADFECKHCVVQWYWATANSCAPRG
FKEYIENYNFPFGTTCDSDGGGRGTYRADMSECGGSSLPEEFWSCADVQI
TADGTSAGAVQALSNPVPDPAAVANDEVEVKENPQGVLEMASQGLENDIT
MAANEDSGKRKEEEMMAASGDCMLEDQPCDGGKECCDIQQFCVKTDKAGG
FTCRFWWSLWEDSELRSKAAE*
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spliced messenger RNA

>Ggra9101.t1 ID=Ggra9101.t1|Name=Ggra9101.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1266bp|location=Sequence derived from alignment at tig00000176_pilon:194157..195422+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTCTCTTATTTTGTGCTCGCAATCGTCGTCATTGCCTTGTTGAT
TTCCGTCGTCCATTCTCATGGTATGATGTGCAACCCGCGCCAACGCGGCG
CATACCATTCCATCAAATGCGGCAATGATCTCGATATTGACAACGTCGTC
ACCGACCACTGCGCCCATTGCCTCAATGGAGGAACTGTTGCCACCGTCAA
GGCCCATCTCCCCCCCGCCGGCTGGAGTGTCTTCGAGCCCACCAAGGACT
TCTTCGGCACCGCCAATCGAGCCGGTCTCTGTGGAGATCCCATGGGGCGC
GTGGATCATATGATTGGTGGTGACTTCATGCCCTACCCCAACGTACCCAT
CGTCGCGCACTGGCAAAAGGGTGGTCAGGTCGACTTTTCAGCCGAGATTG
ACACCAATCACAATGGCTACTTTGAATTCTTTATCTGCAACCTAGACGCT
TGCGGTAAGCCTGACATCGACGCTAGCTGCTTTGTGAACAACAACTGCGT
CAAGCTCAACCGAGTGGCACACCCGTCTTGCGAGAATCCGTCGGGCGCTA
CCATCCACGAATGTGGACCAATCGATGACGCGTACCCCGGCCGTTGGTAC
CTACCATGCCGCAAAACTGGTCATGTGGGCGTTCATATTGTCGGTGGAGA
CTCTGGCACCATGCGCTATCAGCTTCCAGCTGACTTTGAATGTAAGCATT
GCGTCGTGCAGTGGTATTGGGCCACAGCCAACTCGTGTGCGCCTCGAGGC
TTCAAGGAGTACATCGAGAATTACAACTTCCCGTTCGGAACCACTTGTGA
TTCCGACGGCGGCGGCAGAGGAACTTACCGCGCCGATATGTCTGAGTGCG
GTGGTTCATCCTTGCCAGAGGAGTTTTGGTCATGTGCTGACGTCCAGATT
ACCGCAGATGGCACCAGTGCTGGTGCAGTGCAGGCGCTCAGCAACCCGGT
GCCAGACCCAGCTGCTGTGGCGAATGATGAGGTTGAGGTGAAAGAAAACC
CACAAGGAGTGCTCGAAATGGCCTCGCAGGGCTTGGAGAACGATATCACT
ATGGCTGCCAACGAGGACTCCGGTAAGCGCAAGGAGGAGGAGATGATGGC
TGCCTCAGGTGATTGTATGCTTGAAGATCAACCGTGCGATGGCGGCAAGG
AGTGTTGCGACATACAGCAATTCTGCGTGAAGACCGACAAAGCCGGAGGC
TTCACATGTCGCTTCTGGTGGAGTCTTTGGGAGGACTCCGAATTACGATC
AAAGGCTGCCGAGTGA
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protein sequence of Ggra9101.t1

>Ggra9101.t1 ID=Ggra9101.t1|Name=Ggra9101.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=422bp
MLLSYFVLAIVVIALLISVVHSHGMMCNPRQRGAYHSIKCGNDLDIDNVV
TDHCAHCLNGGTVATVKAHLPPAGWSVFEPTKDFFGTANRAGLCGDPMGR
VDHMIGGDFMPYPNVPIVAHWQKGGQVDFSAEIDTNHNGYFEFFICNLDA
CGKPDIDASCFVNNNCVKLNRVAHPSCENPSGATIHECGPIDDAYPGRWY
LPCRKTGHVGVHIVGGDSGTMRYQLPADFECKHCVVQWYWATANSCAPRG
FKEYIENYNFPFGTTCDSDGGGRGTYRADMSECGGSSLPEEFWSCADVQI
TADGTSAGAVQALSNPVPDPAAVANDEVEVKENPQGVLEMASQGLENDIT
MAANEDSGKRKEEEMMAASGDCMLEDQPCDGGKECCDIQQFCVKTDKAGG
FTCRFWWSLWEDSELRSKAAE*
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mRNA from alignment at tig00000176_pilon:194157..195422+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9101.t1 ID=Ggra9101.t1|Name=Ggra9101.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1266bp|location=Sequence derived from alignment at tig00000176_pilon:194157..195422+ (Gracilaria gracilis GNS1m male)
ATGCTGCTCTCTTATTTTGTGCTCGCAATCGTCGTCATTGCCTTGTTGAT
TTCCGTCGTCCATTCTCATGGTATGATGTGCAACCCGCGCCAACGCGGCG
CATACCATTCCATCAAATGCGGCAATGATCTCGATATTGACAACGTCGTC
ACCGACCACTGCGCCCATTGCCTCAATGGAGGAACTGTTGCCACCGTCAA
GGCCCATCTCCCCCCCGCCGGCTGGAGTGTCTTCGAGCCCACCAAGGACT
TCTTCGGCACCGCCAATCGAGCCGGTCTCTGTGGAGATCCCATGGGGCGC
GTGGATCATATGATTGGTGGTGACTTCATGCCCTACCCCAACGTACCCAT
CGTCGCGCACTGGCAAAAGGGTGGTCAGGTCGACTTTTCAGCCGAGATTG
ACACCAATCACAATGGCTACTTTGAATTCTTTATCTGCAACCTAGACGCT
TGCGGTAAGCCTGACATCGACGCTAGCTGCTTTGTGAACAACAACTGCGT
CAAGCTCAACCGAGTGGCACACCCGTCTTGCGAGAATCCGTCGGGCGCTA
CCATCCACGAATGTGGACCAATCGATGACGCGTACCCCGGCCGTTGGTAC
CTACCATGCCGCAAAACTGGTCATGTGGGCGTTCATATTGTCGGTGGAGA
CTCTGGCACCATGCGCTATCAGCTTCCAGCTGACTTTGAATGTAAGCATT
GCGTCGTGCAGTGGTATTGGGCCACAGCCAACTCGTGTGCGCCTCGAGGC
TTCAAGGAGTACATCGAGAATTACAACTTCCCGTTCGGAACCACTTGTGA
TTCCGACGGCGGCGGCAGAGGAACTTACCGCGCCGATATGTCTGAGTGCG
GTGGTTCATCCTTGCCAGAGGAGTTTTGGTCATGTGCTGACGTCCAGATT
ACCGCAGATGGCACCAGTGCTGGTGCAGTGCAGGCGCTCAGCAACCCGGT
GCCAGACCCAGCTGCTGTGGCGAATGATGAGGTTGAGGTGAAAGAAAACC
CACAAGGAGTGCTCGAAATGGCCTCGCAGGGCTTGGAGAACGATATCACT
ATGGCTGCCAACGAGGACTCCGGTAAGCGCAAGGAGGAGGAGATGATGGC
TGCCTCAGGTGATTGTATGCTTGAAGATCAACCGTGCGATGGCGGCAAGG
AGTGTTGCGACATACAGCAATTCTGCGTGAAGACCGACAAAGCCGGAGGC
TTCACATGTCGCTTCTGGTGGAGTCTTTGGGAGGACTCCGAATTACGATC
AAAGGCTGCCGAGTGA
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Coding sequence (CDS) from alignment at tig00000176_pilon:194157..195422+

>Ggra9101.t1 ID=Ggra9101.t1|Name=Ggra9101.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1266bp|location=Sequence derived from alignment at tig00000176_pilon:194157..195422+ (Gracilaria gracilis GNS1m male)
ATGCTGCTCTCTTATTTTGTGCTCGCAATCGTCGTCATTGCCTTGTTGAT
TTCCGTCGTCCATTCTCATGGTATGATGTGCAACCCGCGCCAACGCGGCG
CATACCATTCCATCAAATGCGGCAATGATCTCGATATTGACAACGTCGTC
ACCGACCACTGCGCCCATTGCCTCAATGGAGGAACTGTTGCCACCGTCAA
GGCCCATCTCCCCCCCGCCGGCTGGAGTGTCTTCGAGCCCACCAAGGACT
TCTTCGGCACCGCCAATCGAGCCGGTCTCTGTGGAGATCCCATGGGGCGC
GTGGATCATATGATTGGTGGTGACTTCATGCCCTACCCCAACGTACCCAT
CGTCGCGCACTGGCAAAAGGGTGGTCAGGTCGACTTTTCAGCCGAGATTG
ACACCAATCACAATGGCTACTTTGAATTCTTTATCTGCAACCTAGACGCT
TGCGGTAAGCCTGACATCGACGCTAGCTGCTTTGTGAACAACAACTGCGT
CAAGCTCAACCGAGTGGCACACCCGTCTTGCGAGAATCCGTCGGGCGCTA
CCATCCACGAATGTGGACCAATCGATGACGCGTACCCCGGCCGTTGGTAC
CTACCATGCCGCAAAACTGGTCATGTGGGCGTTCATATTGTCGGTGGAGA
CTCTGGCACCATGCGCTATCAGCTTCCAGCTGACTTTGAATGTAAGCATT
GCGTCGTGCAGTGGTATTGGGCCACAGCCAACTCGTGTGCGCCTCGAGGC
TTCAAGGAGTACATCGAGAATTACAACTTCCCGTTCGGAACCACTTGTGA
TTCCGACGGCGGCGGCAGAGGAACTTACCGCGCCGATATGTCTGAGTGCG
GTGGTTCATCCTTGCCAGAGGAGTTTTGGTCATGTGCTGACGTCCAGATT
ACCGCAGATGGCACCAGTGCTGGTGCAGTGCAGGCGCTCAGCAACCCGGT
GCCAGACCCAGCTGCTGTGGCGAATGATGAGGTTGAGGTGAAAGAAAACC
CACAAGGAGTGCTCGAAATGGCCTCGCAGGGCTTGGAGAACGATATCACT
ATGGCTGCCAACGAGGACTCCGGTAAGCGCAAGGAGGAGGAGATGATGGC
TGCCTCAGGTGATTGTATGCTTGAAGATCAACCGTGCGATGGCGGCAAGG
AGTGTTGCGACATACAGCAATTCTGCGTGAAGACCGACAAAGCCGGAGGC
TTCACATGTCGCTTCTGGTGGAGTCTTTGGGAGGACTCCGAATTACGATC
AAAGGCTGCCGAGTGA
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